Wall clock time and date at job start Tue Mar 31 2020 11:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46853 * 2 1 4 4 C 1.52994 * 109.46784 * 240.00312 * 2 1 3 5 5 C 1.52994 * 109.47284 * 120.00002 * 2 1 3 6 6 N 1.46496 * 109.47155 * 64.41526 * 5 2 1 7 7 C 1.46504 * 120.00244 * 267.52959 * 6 5 2 8 8 C 1.50700 * 109.46664 * 283.06169 * 7 6 5 9 9 H 1.07996 * 120.00752 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99539 * 179.97438 * 8 7 6 11 11 N 1.31519 * 120.00233 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 120.00147 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.46992 * 89.99618 * 12 10 8 14 14 H 1.48498 * 109.46896 * 210.00113 * 12 10 8 15 15 H 1.48501 * 109.46577 * 330.00099 * 12 10 8 16 16 C 1.34778 * 119.99832 * 87.52982 * 6 5 2 17 17 O 1.21592 * 120.00041 * 6.94362 * 16 6 5 18 18 C 1.47536 * 119.99857 * 186.94830 * 16 6 5 19 19 C 1.39535 * 120.05426 * 326.18312 * 18 16 6 20 20 C 1.37779 * 120.18267 * 179.97438 * 19 18 16 21 21 C 1.38643 * 119.97893 * 0.19489 * 20 19 18 22 22 C 1.37654 * 120.32321 * 0.02562 * 21 20 19 23 23 C 1.38880 * 120.86734 * 359.61483 * 22 21 20 24 24 O 1.35860 * 111.30219 * 181.04208 * 23 22 21 25 25 C 1.43784 * 109.23174 * 340.64700 * 24 23 22 26 26 C 1.51677 * 132.13959 * 179.08596 * 22 21 20 27 27 H 1.09005 * 109.46750 * 300.00066 * 1 2 3 28 28 H 1.09003 * 109.47176 * 59.99939 * 1 2 3 29 29 H 1.09001 * 109.47005 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46985 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47280 * 299.99998 * 3 2 1 32 32 H 1.09000 * 109.47539 * 59.99898 * 3 2 1 33 33 H 1.08996 * 109.47708 * 305.01712 * 4 2 1 34 34 H 1.09001 * 109.47539 * 65.02586 * 4 2 1 35 35 H 1.09007 * 109.46663 * 185.01825 * 4 2 1 36 36 H 1.09007 * 109.47052 * 304.41933 * 5 2 1 37 37 H 1.09006 * 109.47137 * 184.41817 * 5 2 1 38 38 H 1.08998 * 109.46894 * 43.06240 * 7 6 5 39 39 H 1.09002 * 109.46937 * 163.06599 * 7 6 5 40 40 H 0.97000 * 120.00397 * 179.97438 * 11 10 8 41 41 H 1.07996 * 119.90246 * 0.02562 * 19 18 16 42 42 H 1.08002 * 120.00612 * 180.21287 * 20 19 18 43 43 H 1.08005 * 119.83679 * 179.97438 * 21 20 19 44 44 H 1.08998 * 110.75846 * 269.56018 * 25 24 23 45 45 H 1.08998 * 110.90984 * 146.26800 * 25 24 23 46 46 H 1.08999 * 110.94381 * 313.74724 * 26 22 21 47 47 H 1.09004 * 110.93463 * 77.39936 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 7 1.6406 -2.1297 1.1972 7 6 0.3875 -2.5593 1.8230 8 6 0.5735 -2.6391 3.3164 9 1 1.5295 -2.3948 3.7554 10 6 -0.4769 -3.0241 4.1222 11 7 -1.6410 -3.3222 3.5876 12 14 -0.2468 -3.1224 5.9734 13 1 -0.5833 -1.8114 6.5844 14 1 -1.1399 -4.1711 6.5282 15 1 1.1660 -3.4628 6.2791 16 6 2.4258 -3.0303 0.5737 17 8 3.5226 -2.7010 0.1651 18 6 1.9543 -4.4158 0.3867 19 6 1.1424 -5.0138 1.3511 20 6 0.7002 -6.3073 1.1790 21 6 1.0654 -7.0194 0.0468 22 6 1.8698 -6.4407 -0.9087 23 6 2.3232 -5.1361 -0.7635 24 8 3.0802 -4.7556 -1.8255 25 6 3.5423 -5.9259 -2.5214 26 6 2.4378 -6.9647 -2.2139 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6052 -1.7196 -1.2955 34 1 1.7520 -0.1580 -2.1370 35 1 3.1263 -0.7997 -1.2054 36 1 1.6135 -0.2551 2.1375 37 1 3.1273 -0.6531 1.2896 38 1 -0.3988 -1.8404 1.5927 39 1 0.1071 -3.5401 1.4389 40 1 -2.3799 -3.5934 4.1545 41 1 0.8592 -4.4609 2.2345 42 1 0.0691 -6.7662 1.9256 43 1 0.7178 -8.0334 -0.0856 44 1 4.5033 -6.2557 -2.1268 45 1 3.6098 -5.7399 -3.5932 46 1 2.8641 -7.9592 -2.0819 47 1 1.6779 -6.9692 -2.9954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932061089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:31 Heat of formation + Delta-G solvation = -43.688162 kcal Electronic energy + Delta-G solvation = -28379.218751 eV Core-core repulsion = 24720.404570 eV Total energy + Delta-G solvation = -3658.814181 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.25217 -40.94454 -38.44966 -37.92588 -36.17164 -34.29356 -33.55037 -31.21709 -30.39739 -29.36989 -28.19373 -28.10895 -27.32189 -25.20214 -24.24690 -23.47468 -22.78856 -20.69221 -19.56845 -18.60539 -18.41931 -17.95116 -17.58661 -16.91852 -16.72936 -16.43906 -16.32673 -15.98933 -15.29731 -14.88728 -14.74499 -14.54886 -14.39700 -14.32182 -14.04720 -13.87090 -13.47288 -13.44525 -13.09533 -12.96745 -12.82950 -12.72477 -12.67528 -12.55307 -12.45207 -12.35616 -12.14815 -12.03365 -11.82198 -11.77729 -11.57951 -11.48905 -11.36118 -10.72649 -10.47431 -9.72548 -9.34147 -9.06097 -8.19281 -6.34750 0.02256 0.38755 1.41480 1.44677 1.53525 1.92197 2.30787 2.36258 2.45663 2.84026 3.08649 3.49886 3.62613 3.79522 3.88870 3.93806 4.05018 4.12575 4.20591 4.33733 4.44877 4.53796 4.56171 4.59934 4.66115 4.73549 4.79663 4.87091 4.88834 4.90119 4.93718 4.96443 5.02968 5.05800 5.08512 5.19166 5.22877 5.30989 5.34464 5.39984 5.47049 5.52391 5.59812 5.69127 5.75823 5.89390 6.05754 6.22690 6.60690 6.82951 7.30830 7.43294 8.84429 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009739 B = 0.006522 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.439171 B = 4292.239704 C = 6497.968072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 C -0.128 4.128 4 C -0.118 4.118 5 C 0.128 3.872 6 N -0.587 5.587 7 C 0.219 3.781 8 C -0.549 4.549 9 H 0.049 0.951 10 C 0.034 3.966 11 N -0.906 5.906 12 Si 0.951 3.049 13 H -0.276 1.276 14 H -0.276 1.276 15 H -0.275 1.275 16 C 0.555 3.445 17 O -0.584 6.584 18 C -0.187 4.187 19 C -0.076 4.076 20 C -0.166 4.166 21 C -0.040 4.040 22 C -0.200 4.200 23 C 0.135 3.865 24 O -0.320 6.320 25 C 0.037 3.963 26 C -0.093 4.093 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.036 0.964 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.020 0.980 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.025 0.975 39 H 0.061 0.939 40 H 0.270 0.730 41 H 0.167 0.833 42 H 0.144 0.856 43 H 0.166 0.834 44 H 0.082 0.918 45 H 0.132 0.868 46 H 0.121 0.879 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.610 -4.815 -10.323 11.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.082 4.082 3 C -0.186 4.186 4 C -0.175 4.175 5 C 0.005 3.995 6 N -0.315 5.315 7 C 0.099 3.901 8 C -0.587 4.587 9 H 0.067 0.933 10 C -0.168 4.168 11 N -0.544 5.544 12 Si 0.776 3.224 13 H -0.201 1.201 14 H -0.201 1.201 15 H -0.200 1.200 16 C 0.346 3.654 17 O -0.468 6.468 18 C -0.190 4.190 19 C -0.093 4.093 20 C -0.184 4.184 21 C -0.058 4.058 22 C -0.201 4.201 23 C 0.088 3.912 24 O -0.234 6.234 25 C -0.037 4.037 26 C -0.129 4.129 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.043 0.957 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.184 0.816 42 H 0.162 0.838 43 H 0.183 0.817 44 H 0.100 0.900 45 H 0.150 0.850 46 H 0.139 0.861 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.039 -4.454 -10.569 12.160 hybrid contribution -0.112 0.054 1.333 1.338 sum 3.926 -4.401 -9.237 10.959 Atomic orbital electron populations 1.21870 0.94291 1.01079 1.01780 1.20945 0.96119 0.96595 0.94536 1.21725 1.00916 0.93119 1.02805 1.21685 1.00246 0.98462 0.97109 1.21474 0.99243 0.80633 0.98120 1.47973 1.23149 1.07608 1.52790 1.20108 0.80872 0.97428 0.91712 1.21542 0.97526 1.47271 0.92390 0.93313 1.25537 0.94505 0.94241 1.02522 1.70007 1.02382 1.44833 1.37184 0.85665 0.78043 0.78147 0.80517 1.20116 1.20091 1.20008 1.18347 0.84120 0.85555 0.77406 1.90632 1.21711 1.81067 1.53355 1.19367 1.07913 0.95696 0.96068 1.22504 0.91392 0.96009 0.99429 1.21272 1.03246 0.93958 0.99944 1.20817 0.93481 1.00677 0.90783 1.21164 1.04337 0.94495 1.00077 1.19660 0.91075 0.93497 0.87007 1.86856 1.64816 1.34356 1.37327 1.24240 0.97873 0.82469 0.99093 1.21836 0.97722 1.00697 0.92668 0.92724 0.91402 0.94456 0.92605 0.90917 0.91789 0.96082 0.91669 0.93621 0.90679 0.92130 0.95716 0.92194 0.92034 0.81600 0.83847 0.81678 0.89974 0.84970 0.86083 0.87582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 7.58 71.98 0.55 -4.00 16 2 C -0.08 -2.78 0.85 -52.18 -0.04 -2.82 16 3 C -0.13 -3.44 8.47 71.98 0.61 -2.83 16 4 C -0.12 -4.29 7.08 71.98 0.51 -3.78 16 5 C 0.13 5.25 4.54 86.38 0.39 5.64 16 6 N -0.59 -27.08 2.03 -829.91 -1.69 -28.77 16 7 C 0.22 10.77 4.06 85.63 0.35 11.12 16 8 C -0.55 -28.58 7.53 25.60 0.19 -28.38 16 9 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 10 C 0.03 1.75 5.45 84.65 0.46 2.21 16 11 N -0.91 -47.90 13.29 21.45 0.28 -47.62 16 12 Si 0.95 41.05 29.54 68.60 2.03 43.08 16 13 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 14 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 15 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 16 C 0.56 26.70 5.52 86.70 0.48 27.17 16 17 O -0.58 -29.91 14.33 -1.37 -0.02 -29.93 16 18 C -0.19 -8.32 5.54 -19.93 -0.11 -8.43 16 19 C -0.08 -3.24 7.39 22.47 0.17 -3.07 16 20 C -0.17 -5.71 10.05 22.26 0.22 -5.49 16 21 C -0.04 -1.10 10.02 22.23 0.22 -0.88 16 22 C -0.20 -5.93 6.27 -19.54 -0.12 -6.05 16 23 C 0.13 5.22 6.69 23.01 0.15 5.38 16 24 O -0.32 -11.81 10.65 -89.34 -0.95 -12.76 16 25 C 0.04 0.84 8.01 72.56 0.58 1.43 16 26 C -0.09 -1.80 7.12 30.74 0.22 -1.58 16 27 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.04 1.47 5.84 -2.39 -0.01 1.46 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.02 0.86 6.55 -2.39 -0.02 0.85 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.04 1.80 7.18 -2.38 -0.02 1.78 16 36 H 0.07 3.07 7.96 -2.38 -0.02 3.06 16 37 H 0.06 2.56 7.41 -2.38 -0.02 2.54 16 38 H 0.02 1.28 5.79 -2.39 -0.01 1.27 16 39 H 0.06 3.07 3.84 -2.64 -0.01 3.06 16 40 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 41 H 0.17 8.07 3.75 -2.91 -0.01 8.06 16 42 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 43 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 44 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -66.54 365.31 5.45 -61.09 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 0.97 Total: 29.28 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 4.83 Total: -14.37 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -1.40 Total: -76.39 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -0.97 Total: -42.69 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -66.54 5.45 -61.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932061089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.406 kcal (2) G-P(sol) polarization free energy of solvation -66.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds