Wall clock time and date at job start Tue Mar 31 2020 12:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46804 * 2 1 4 4 C 1.53004 * 109.46804 * 180.02562 * 3 2 1 5 5 H 1.09000 * 110.05664 * 56.39969 * 4 3 2 6 6 C 1.54262 * 110.03368 * 294.97817 * 4 3 2 7 7 C 1.54889 * 104.19275 * 217.10452 * 6 4 3 8 8 C 1.54894 * 102.75200 * 37.94479 * 7 6 4 9 9 C 1.53882 * 110.03041 * 177.80816 * 4 3 2 10 10 H 1.08995 * 110.03412 * 238.57576 * 9 4 3 11 11 C 1.50705 * 110.07224 * 359.97438 * 9 4 3 12 12 O 1.21288 * 119.99534 * 82.70954 * 11 9 4 13 13 N 1.34777 * 120.00113 * 262.71156 * 11 9 4 14 14 C 1.39990 * 119.99970 * 185.11054 * 13 11 9 15 15 C 1.38917 * 119.99940 * 213.99494 * 14 13 11 16 16 C 1.38006 * 119.99641 * 179.79005 * 15 14 13 17 17 C 1.38909 * 120.00094 * 0.49564 * 16 15 14 18 18 O 1.35778 * 120.00292 * 179.76690 * 17 16 15 19 19 C 1.34808 * 117.00264 * 174.30443 * 18 17 16 20 20 H 1.07996 * 120.00283 * 5.06838 * 19 18 17 21 21 C 1.38636 * 119.99849 * 185.06493 * 19 18 17 22 22 N 1.31578 * 120.00038 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99828 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47222 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46765 * 120.00790 * 23 21 19 26 26 H 1.48497 * 109.47255 * 240.00273 * 23 21 19 27 27 C 1.38912 * 120.00039 * 359.73545 * 17 16 15 28 28 C 1.37994 * 120.00378 * 0.03076 * 27 17 16 29 29 H 1.08993 * 109.47165 * 59.99878 * 1 2 3 30 30 H 1.09002 * 109.46707 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46908 * 299.99752 * 1 2 3 32 32 H 1.08996 * 109.46908 * 240.00248 * 2 1 3 33 33 H 1.08998 * 109.47542 * 119.99908 * 2 1 3 34 34 H 1.08996 * 109.47185 * 60.00418 * 3 2 1 35 35 H 1.09004 * 109.46990 * 299.99791 * 3 2 1 36 36 H 1.08995 * 110.48711 * 98.43136 * 6 4 3 37 37 H 1.09001 * 110.48355 * 335.78437 * 6 4 3 38 38 H 1.09002 * 110.75455 * 156.25612 * 7 6 4 39 39 H 1.08997 * 110.75735 * 279.62549 * 7 6 4 40 40 H 1.09003 * 110.48723 * 80.72678 * 8 7 6 41 41 H 1.08990 * 110.49066 * 203.37680 * 8 7 6 42 42 H 0.97003 * 119.99551 * 5.11060 * 13 11 9 43 43 H 1.07997 * 120.00294 * 0.02562 * 15 14 13 44 44 H 1.07997 * 120.00033 * 180.24942 * 16 15 14 45 45 H 0.96994 * 119.99673 * 179.97438 * 22 21 19 46 46 H 1.08004 * 119.99552 * 180.02562 * 27 17 16 47 47 H 1.08001 * 120.00143 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9435 0.8761 -0.8537 6 6 4.0990 0.8304 1.3128 7 6 5.3544 1.6741 1.6464 8 6 4.9280 3.1025 1.2259 9 6 4.0971 2.8873 -0.0559 10 1 4.7262 3.0218 -0.9358 11 6 2.9443 3.8573 -0.0931 12 8 2.3947 4.1856 0.9371 13 7 2.5242 4.3600 -1.2709 14 6 1.5258 5.3409 -1.2971 15 6 0.6120 5.3741 -2.3428 16 6 -0.3749 6.3385 -2.3664 17 6 -0.4481 7.2823 -1.3498 18 8 -1.4162 8.2340 -1.3753 19 6 -1.5056 9.0451 -0.3023 20 1 -0.7747 8.9754 0.4897 21 6 -2.5359 9.9686 -0.2154 22 7 -3.4267 10.0532 -1.1801 23 14 -2.6602 11.0920 1.2719 24 1 -1.5453 10.7992 2.2080 25 1 -2.5773 12.5077 0.8311 26 1 -3.9568 10.8625 1.9585 27 6 0.4687 7.2520 -0.3066 28 6 1.4526 6.2848 -0.2805 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 4.3703 -0.2148 1.1644 37 1 3.3551 0.9239 2.1040 38 1 5.5737 1.6349 2.7134 39 1 6.2114 1.3390 1.0622 40 1 4.3179 3.5629 2.0031 41 1 5.8040 3.7154 1.0141 42 1 2.9137 4.0420 -2.1005 43 1 0.6714 4.6429 -3.1354 44 1 -1.0879 6.3618 -3.1772 45 1 -4.1477 10.6992 -1.1191 46 1 0.4114 7.9857 0.4840 47 1 2.1651 6.2611 0.5308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117820084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:17 Heat of formation + Delta-G solvation = -63.107556 kcal Electronic energy + Delta-G solvation = -26549.488379 eV Core-core repulsion = 22889.832110 eV Total energy + Delta-G solvation = -3659.656269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.73175 -39.01262 -37.79644 -36.29237 -34.57616 -33.90197 -32.17236 -30.25802 -30.10061 -29.53732 -27.61419 -25.37691 -25.14928 -22.75524 -22.00605 -21.88132 -20.65056 -20.59448 -19.21184 -17.99213 -17.39915 -16.87762 -16.37169 -15.94276 -15.18668 -15.03657 -14.83665 -14.48529 -14.08838 -13.78638 -13.76626 -13.61591 -13.44134 -13.09535 -12.85723 -12.62773 -12.55666 -12.10713 -11.84785 -11.77882 -11.59964 -11.53078 -11.36692 -11.26404 -11.05899 -11.02791 -10.91333 -10.80631 -10.70296 -10.58630 -10.52237 -10.41021 -9.63859 -9.52913 -9.16635 -8.68288 -8.19639 -6.90312 -6.43001 -4.00493 2.10059 2.21799 2.90992 3.15238 3.16841 3.22181 3.35202 3.99423 4.24789 4.35684 4.45891 4.59715 4.82769 4.91122 5.04230 5.06768 5.11121 5.19703 5.25131 5.28585 5.30205 5.37122 5.42654 5.51709 5.65991 5.68289 5.72526 5.72914 5.74073 5.78137 5.90092 5.95142 5.98075 6.08992 6.14964 6.17734 6.20501 6.23101 6.32383 6.36536 6.74861 6.86987 7.02487 7.12528 7.31725 7.45345 7.73162 7.81475 8.02359 8.44443 9.03061 9.72683 10.75114 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017884 B = 0.002837 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.289221 B = 9867.677484 C =10300.161565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.128 4.128 4 C -0.075 4.075 5 H 0.077 0.923 6 C -0.117 4.117 7 C -0.123 4.123 8 C -0.113 4.113 9 C -0.109 4.109 10 H 0.087 0.913 11 C 0.518 3.482 12 O -0.524 6.524 13 N -0.664 5.664 14 C 0.039 3.961 15 C -0.095 4.095 16 C -0.177 4.177 17 C 0.146 3.854 18 O -0.178 6.178 19 C -0.390 4.390 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.219 4.219 28 C -0.064 4.064 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.400 0.600 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.269 0.731 46 H 0.130 0.870 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.907 -18.422 1.018 24.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.094 4.094 5 H 0.096 0.904 6 C -0.155 4.155 7 C -0.161 4.161 8 C -0.151 4.151 9 C -0.131 4.131 10 H 0.106 0.894 11 C 0.305 3.695 12 O -0.400 6.400 13 N -0.308 5.308 14 C -0.053 4.053 15 C -0.115 4.115 16 C -0.197 4.197 17 C 0.092 3.908 18 O -0.081 6.081 19 C -0.466 4.466 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.499 5.499 23 Si 0.765 3.235 24 H -0.190 1.190 25 H -0.202 1.202 26 H -0.201 1.201 27 C -0.238 4.238 28 C -0.084 4.084 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.234 0.766 43 H 0.132 0.868 44 H 0.139 0.861 45 H 0.079 0.921 46 H 0.147 0.853 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 15.152 -17.981 1.555 23.566 hybrid contribution 0.113 0.437 0.199 0.493 sum 15.265 -17.544 1.754 23.322 Atomic orbital electron populations 1.21775 0.95841 1.01253 1.02284 1.21498 0.95953 0.96643 1.01570 1.21969 0.93927 0.97207 1.03461 1.21702 0.95891 0.93003 0.98802 0.90424 1.22446 0.97358 0.98700 0.96967 1.22479 0.97575 0.94895 1.01118 1.22371 0.98937 0.97451 0.96352 1.22036 0.95379 0.94790 1.00914 0.89418 1.20455 0.84646 0.80809 0.83586 1.90704 1.56584 1.59756 1.32949 1.43383 1.38884 1.39765 1.08774 1.17242 0.94597 0.93561 0.99945 1.20354 0.94117 0.98879 0.98129 1.19997 1.01830 0.97140 1.00754 1.19391 0.89237 0.88943 0.93240 1.83972 1.45532 1.37956 1.40660 1.21382 1.12753 1.14366 0.98094 0.89001 1.25282 0.94727 0.97780 0.98748 1.70056 1.13539 1.34587 1.31678 0.85653 0.78739 0.79251 0.79855 1.19044 1.20164 1.20129 1.21086 0.98506 1.02573 1.01676 1.20682 0.98085 0.92286 0.97348 0.92664 0.93001 0.92611 0.92411 0.92069 0.90397 0.91733 0.91623 0.91066 0.91344 0.91575 0.89544 0.91464 0.76590 0.86849 0.86124 0.92106 0.85255 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.16 0.37 -1.16 16 2 C -0.12 -1.09 5.76 -26.73 -0.15 -1.24 16 3 C -0.13 -1.39 3.39 -26.73 -0.09 -1.48 16 4 C -0.08 -0.66 2.96 -89.50 -0.26 -0.93 16 5 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 6 C -0.12 -0.96 5.39 -25.07 -0.14 -1.09 16 7 C -0.12 -0.95 6.91 -24.74 -0.17 -1.12 16 8 C -0.11 -1.10 6.32 -25.07 -0.16 -1.25 16 9 C -0.11 -1.07 3.29 -90.65 -0.30 -1.37 16 10 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 11 C 0.52 7.15 4.42 -10.98 -0.05 7.10 16 12 O -0.52 -9.38 12.54 5.55 0.07 -9.31 16 13 N -0.66 -8.98 5.06 -9.82 -0.05 -9.03 16 14 C 0.04 0.69 6.27 -83.63 -0.52 0.17 16 15 C -0.09 -1.66 9.96 -39.42 -0.39 -2.05 16 16 C -0.18 -3.72 9.99 -39.42 -0.39 -4.12 16 17 C 0.15 3.57 6.65 -39.08 -0.26 3.31 16 18 O -0.18 -5.12 9.75 0.03 0.00 -5.12 16 19 C -0.39 -11.07 9.48 30.88 0.29 -10.77 16 20 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 22 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16 23 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 27 C -0.22 -4.99 9.16 -39.42 -0.36 -5.35 16 28 C -0.06 -1.30 8.65 -39.42 -0.34 -1.64 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.52 7.41 -51.93 -0.38 0.14 16 34 H 0.08 1.08 6.83 -51.93 -0.35 0.72 16 35 H 0.06 0.76 7.17 -51.93 -0.37 0.39 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.67 7.80 -51.93 -0.41 0.26 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 1.05 6.95 -51.93 -0.36 0.69 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.40 3.98 8.82 -40.82 -0.36 3.62 16 43 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 45 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.13 2.98 5.63 -52.48 -0.30 2.69 16 47 H 0.12 2.37 6.47 -52.49 -0.34 2.03 16 LS Contribution 374.01 15.07 5.64 5.64 Total: -1.00 -32.41 374.01 -8.99 -41.40 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -7.35 Total: 7.34 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -3.03 Total: -22.02 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.71 Total: -33.81 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.07 Total: -14.43 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.41 -8.99 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117820084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.710 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds