Wall clock time and date at job start Tue Mar 31 2020 12:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46804 * 2 1 4 4 C 1.53004 * 109.46804 * 180.02562 * 3 2 1 5 5 H 1.09000 * 110.05664 * 56.39969 * 4 3 2 6 6 C 1.54262 * 110.03368 * 294.97817 * 4 3 2 7 7 C 1.54889 * 104.19275 * 217.10452 * 6 4 3 8 8 C 1.54894 * 102.75200 * 37.94479 * 7 6 4 9 9 C 1.53882 * 110.03041 * 177.80816 * 4 3 2 10 10 H 1.08995 * 110.03412 * 238.57576 * 9 4 3 11 11 C 1.50705 * 110.07224 * 359.97438 * 9 4 3 12 12 O 1.21288 * 119.99534 * 82.70954 * 11 9 4 13 13 N 1.34777 * 120.00113 * 262.71156 * 11 9 4 14 14 C 1.39990 * 119.99970 * 185.11054 * 13 11 9 15 15 C 1.38917 * 119.99940 * 213.99494 * 14 13 11 16 16 C 1.38006 * 119.99641 * 179.79005 * 15 14 13 17 17 C 1.38909 * 120.00094 * 0.49564 * 16 15 14 18 18 O 1.35778 * 120.00292 * 179.76690 * 17 16 15 19 19 C 1.34808 * 117.00264 * 174.30443 * 18 17 16 20 20 H 1.07996 * 120.00283 * 5.06838 * 19 18 17 21 21 C 1.38636 * 119.99849 * 185.06493 * 19 18 17 22 22 N 1.31578 * 120.00038 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99828 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47222 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46765 * 120.00790 * 23 21 19 26 26 H 1.48497 * 109.47255 * 240.00273 * 23 21 19 27 27 C 1.38912 * 120.00039 * 359.73545 * 17 16 15 28 28 C 1.37994 * 120.00378 * 0.03076 * 27 17 16 29 29 H 1.08993 * 109.47165 * 59.99878 * 1 2 3 30 30 H 1.09002 * 109.46707 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46908 * 299.99752 * 1 2 3 32 32 H 1.08996 * 109.46908 * 240.00248 * 2 1 3 33 33 H 1.08998 * 109.47542 * 119.99908 * 2 1 3 34 34 H 1.08996 * 109.47185 * 60.00418 * 3 2 1 35 35 H 1.09004 * 109.46990 * 299.99791 * 3 2 1 36 36 H 1.08995 * 110.48711 * 98.43136 * 6 4 3 37 37 H 1.09001 * 110.48355 * 335.78437 * 6 4 3 38 38 H 1.09002 * 110.75455 * 156.25612 * 7 6 4 39 39 H 1.08997 * 110.75735 * 279.62549 * 7 6 4 40 40 H 1.09003 * 110.48723 * 80.72678 * 8 7 6 41 41 H 1.08990 * 110.49066 * 203.37680 * 8 7 6 42 42 H 0.97003 * 119.99551 * 5.11060 * 13 11 9 43 43 H 1.07997 * 120.00294 * 0.02562 * 15 14 13 44 44 H 1.07997 * 120.00033 * 180.24942 * 16 15 14 45 45 H 0.96994 * 119.99673 * 179.97438 * 22 21 19 46 46 H 1.08004 * 119.99552 * 180.02562 * 27 17 16 47 47 H 1.08001 * 120.00143 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9435 0.8761 -0.8537 6 6 4.0990 0.8304 1.3128 7 6 5.3544 1.6741 1.6464 8 6 4.9280 3.1025 1.2259 9 6 4.0971 2.8873 -0.0559 10 1 4.7262 3.0218 -0.9358 11 6 2.9443 3.8573 -0.0931 12 8 2.3947 4.1856 0.9371 13 7 2.5242 4.3600 -1.2709 14 6 1.5258 5.3409 -1.2971 15 6 0.6120 5.3741 -2.3428 16 6 -0.3749 6.3385 -2.3664 17 6 -0.4481 7.2823 -1.3498 18 8 -1.4162 8.2340 -1.3753 19 6 -1.5056 9.0451 -0.3023 20 1 -0.7747 8.9754 0.4897 21 6 -2.5359 9.9686 -0.2154 22 7 -3.4267 10.0532 -1.1801 23 14 -2.6602 11.0920 1.2719 24 1 -1.5453 10.7992 2.2080 25 1 -2.5773 12.5077 0.8311 26 1 -3.9568 10.8625 1.9585 27 6 0.4687 7.2520 -0.3066 28 6 1.4526 6.2848 -0.2805 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 4.3703 -0.2148 1.1644 37 1 3.3551 0.9239 2.1040 38 1 5.5737 1.6349 2.7134 39 1 6.2114 1.3390 1.0622 40 1 4.3179 3.5629 2.0031 41 1 5.8040 3.7154 1.0141 42 1 2.9137 4.0420 -2.1005 43 1 0.6714 4.6429 -3.1354 44 1 -1.0879 6.3618 -3.1772 45 1 -4.1477 10.6992 -1.1191 46 1 0.4114 7.9857 0.4840 47 1 2.1651 6.2611 0.5308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117820084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:16 Heat of formation + Delta-G solvation = -82.241457 kcal Electronic energy + Delta-G solvation = -26550.318087 eV Core-core repulsion = 22889.832110 eV Total energy + Delta-G solvation = -3660.485977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.87516 -40.63834 -39.03739 -37.79988 -35.42811 -35.27010 -34.18124 -31.89811 -31.05010 -30.39048 -29.05797 -27.27972 -26.04527 -24.18298 -23.57082 -22.62371 -22.02248 -21.33470 -20.39552 -19.76387 -19.05401 -18.02570 -17.84446 -16.83726 -16.44438 -16.25291 -15.99473 -15.88970 -15.55478 -15.44156 -15.26009 -14.65980 -14.56767 -14.51131 -14.21163 -13.87613 -13.63691 -13.47292 -13.27203 -13.18047 -12.88573 -12.75388 -12.63240 -12.46790 -12.23009 -12.13291 -11.93312 -11.74886 -11.67984 -11.46991 -11.39907 -11.34273 -11.26113 -11.08032 -10.70681 -10.47986 -9.86153 -8.60392 -8.48764 -6.15563 0.49536 0.53724 1.33176 1.39983 1.51179 1.71224 2.14998 2.19711 2.80614 3.13369 3.46850 3.50603 3.64172 3.70952 3.96322 4.07463 4.10475 4.13440 4.31194 4.35224 4.45647 4.47139 4.54070 4.62082 4.62928 4.66271 4.72372 4.76110 4.78604 4.92695 4.99717 5.03957 5.05577 5.08482 5.11281 5.20000 5.25363 5.26674 5.32348 5.33512 5.41963 5.45506 5.48643 5.56651 5.60880 5.68275 6.00571 6.15983 6.59957 6.95943 7.30872 7.75483 8.74197 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017884 B = 0.002837 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.289221 B = 9867.677484 C =10300.161565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C -0.126 4.126 4 C -0.070 4.070 5 H 0.111 0.889 6 C -0.118 4.118 7 C -0.116 4.116 8 C -0.118 4.118 9 C -0.103 4.103 10 H 0.125 0.875 11 C 0.517 3.483 12 O -0.568 6.568 13 N -0.653 5.653 14 C 0.069 3.931 15 C -0.080 4.080 16 C -0.179 4.179 17 C 0.106 3.894 18 O -0.228 6.228 19 C -0.414 4.414 20 H 0.096 0.904 21 C -0.020 4.020 22 N -0.918 5.918 23 Si 1.016 2.984 24 H -0.257 1.257 25 H -0.264 1.264 26 H -0.267 1.267 27 C -0.228 4.228 28 C -0.077 4.077 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.035 0.965 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.037 0.963 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.424 0.576 43 H 0.165 0.835 44 H 0.128 0.872 45 H 0.273 0.727 46 H 0.115 0.885 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.080 -21.456 0.184 28.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.151 4.151 3 C -0.163 4.163 4 C -0.089 4.089 5 H 0.129 0.871 6 C -0.155 4.155 7 C -0.153 4.153 8 C -0.156 4.156 9 C -0.124 4.124 10 H 0.143 0.857 11 C 0.306 3.694 12 O -0.446 6.446 13 N -0.300 5.300 14 C -0.025 4.025 15 C -0.100 4.100 16 C -0.199 4.199 17 C 0.055 3.945 18 O -0.134 6.134 19 C -0.490 4.490 20 H 0.113 0.887 21 C -0.218 4.218 22 N -0.556 5.556 23 Si 0.835 3.165 24 H -0.180 1.180 25 H -0.189 1.189 26 H -0.192 1.192 27 C -0.247 4.247 28 C -0.097 4.097 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.263 0.737 43 H 0.183 0.817 44 H 0.146 0.854 45 H 0.082 0.918 46 H 0.133 0.867 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 18.396 -21.079 0.694 27.986 hybrid contribution -0.656 1.075 0.429 1.330 sum 17.740 -20.004 1.123 26.761 Atomic orbital electron populations 1.21807 0.96888 1.01836 1.00930 1.21478 0.95016 0.95712 1.02925 1.21899 0.95708 0.97785 1.00946 1.21775 0.94124 0.92571 1.00415 0.87100 1.22452 0.96984 1.00098 0.95970 1.22475 0.98070 0.93157 1.01635 1.22393 0.98843 0.98966 0.95399 1.22165 0.93804 0.93955 1.02489 0.85712 1.21328 0.84897 0.80553 0.82573 1.90707 1.58039 1.61217 1.34666 1.43371 1.37794 1.38554 1.10275 1.17386 0.94411 0.92591 0.98137 1.20781 0.92023 0.98253 0.98944 1.20335 1.02818 0.96836 0.99870 1.19904 0.89487 0.89912 0.95195 1.83933 1.47945 1.40014 1.41540 1.21794 1.13476 1.15106 0.98598 0.88689 1.26521 0.93964 0.99197 1.02092 1.70181 1.14818 1.36333 1.34282 0.84571 0.79120 0.77058 0.75723 1.18034 1.18909 1.19200 1.21069 0.99273 1.03207 1.01193 1.20751 0.97721 0.92649 0.98561 0.93407 0.91472 0.94587 0.90210 0.91372 0.94402 0.92707 0.89374 0.93325 0.91357 0.89112 0.93030 0.90117 0.73722 0.81742 0.85410 0.91753 0.86746 0.86293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.91 71.98 0.71 -2.22 16 2 C -0.11 -1.79 5.76 30.60 0.18 -1.61 16 3 C -0.13 -2.46 3.39 30.60 0.10 -2.36 16 4 C -0.07 -0.96 2.96 -10.07 -0.03 -0.99 16 5 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 6 C -0.12 -1.55 5.39 31.67 0.17 -1.37 16 7 C -0.12 -1.40 6.91 31.89 0.22 -1.18 16 8 C -0.12 -2.00 6.32 31.67 0.20 -1.80 16 9 C -0.10 -1.64 3.29 -10.81 -0.04 -1.68 16 10 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 11 C 0.52 13.23 4.42 87.66 0.39 13.62 16 12 O -0.57 -20.41 12.54 -3.06 -0.04 -20.45 16 13 N -0.65 -15.58 5.06 -303.37 -1.53 -17.12 16 14 C 0.07 2.30 6.27 38.16 0.24 2.54 16 15 C -0.08 -2.61 9.96 22.38 0.22 -2.39 16 16 C -0.18 -7.52 9.99 22.38 0.22 -7.29 16 17 C 0.11 5.42 6.65 22.59 0.15 5.58 16 18 O -0.23 -14.00 9.75 -22.82 -0.22 -14.22 16 19 C -0.41 -24.96 9.48 67.92 0.64 -24.32 16 20 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 21 C -0.02 -1.17 5.49 84.83 0.47 -0.71 16 22 N -0.92 -57.11 13.67 21.61 0.30 -56.81 16 23 Si 1.02 44.44 29.55 68.60 2.03 46.47 16 24 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 25 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 27 C -0.23 -10.91 9.16 22.37 0.20 -10.70 16 28 C -0.08 -3.14 8.65 22.38 0.19 -2.95 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 0.99 7.41 -2.39 -0.02 0.97 16 34 H 0.04 1.05 6.83 -2.39 -0.02 1.03 16 35 H 0.05 1.15 7.17 -2.38 -0.02 1.14 16 36 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 37 H 0.05 0.86 7.80 -2.39 -0.02 0.84 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.05 1.25 6.95 -2.39 -0.02 1.23 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.42 6.30 8.82 -92.71 -0.82 5.48 16 43 H 0.17 3.73 8.06 -2.91 -0.02 3.71 16 44 H 0.13 5.12 8.06 -2.91 -0.02 5.10 16 45 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 46 H 0.11 5.69 5.63 -2.91 -0.02 5.67 16 47 H 0.12 4.86 6.47 -2.91 -0.02 4.84 16 Total: -1.00 -78.37 374.01 4.93 -73.44 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.15 Total: 28.53 kcal Atomic # 6 Polarization: -44.09 SS G_CDS: 4.25 Total: -39.84 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -1.24 Total: -73.93 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -0.26 Total: -34.67 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -78.37 4.93 -73.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117820084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.804 kcal (2) G-P(sol) polarization free energy of solvation -78.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds