Wall clock time and date at job start Tue Mar 31 2020 12:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47495 * 64.33072 * 3 2 1 5 5 C 1.36002 * 117.00097 * 179.97438 * 4 3 2 6 6 C 1.38561 * 120.07385 * 0.02562 * 5 4 3 7 7 C 1.38238 * 120.00133 * 179.70450 * 6 5 4 8 8 C 1.38261 * 120.14346 * 0.54723 * 7 6 5 9 9 C 1.50695 * 119.92658 * 179.72679 * 8 7 6 10 10 N 1.46504 * 109.47034 * 274.16998 * 9 8 7 11 11 C 1.36937 * 119.99935 * 95.49738 * 10 9 8 12 12 H 1.07997 * 119.99710 * 207.24291 * 11 10 9 13 13 C 1.38812 * 119.99971 * 27.51064 * 11 10 9 14 14 N 1.31622 * 119.99872 * 209.07445 * 13 11 10 15 15 Si 1.86794 * 119.99939 * 29.07964 * 13 11 10 16 16 H 1.48497 * 109.47542 * 0.05418 * 15 13 11 17 17 H 1.48506 * 109.47013 * 120.05739 * 15 13 11 18 18 H 1.48506 * 109.46938 * 240.05540 * 15 13 11 19 19 C 1.46497 * 119.99912 * 275.49773 * 10 9 8 20 20 C 1.52999 * 109.46957 * 269.99656 * 19 10 9 21 21 C 1.53004 * 109.47253 * 180.02562 * 20 19 10 22 22 C 1.53005 * 109.47336 * 180.02562 * 21 20 19 23 23 C 1.38236 * 120.14484 * 359.44750 * 8 7 6 24 24 C 1.38564 * 120.00140 * 0.27702 * 23 8 7 25 25 O 1.35999 * 120.07566 * 179.97438 * 24 23 8 26 26 C 1.42899 * 116.99760 * 359.97438 * 25 24 23 27 27 H 4.38440 * 5.44500 * 180.02562 * 4 1 2 28 28 H 1.09006 * 109.47449 * 304.32832 * 3 2 1 29 29 H 1.09003 * 109.47165 * 184.33089 * 3 2 1 30 30 H 1.08004 * 119.99729 * 359.97438 * 6 5 4 31 31 H 1.07996 * 119.92933 * 180.29025 * 7 6 5 32 32 H 1.08999 * 109.47304 * 154.16795 * 9 8 7 33 33 H 1.09006 * 109.47243 * 34.16920 * 9 8 7 34 34 H 0.96999 * 120.00126 * 0.02562 * 14 13 11 35 35 H 1.08990 * 109.47288 * 29.99740 * 19 10 9 36 36 H 1.09002 * 109.47321 * 150.00134 * 19 10 9 37 37 H 1.08998 * 109.47486 * 300.00152 * 20 19 10 38 38 H 1.09002 * 109.47164 * 59.99817 * 20 19 10 39 39 H 1.09004 * 109.46919 * 299.99882 * 21 20 19 40 40 H 1.08995 * 109.47002 * 59.99698 * 21 20 19 41 41 H 1.08995 * 109.46669 * 179.97438 * 22 21 20 42 42 H 1.08996 * 109.46378 * 300.00202 * 22 21 20 43 43 H 1.09002 * 109.46928 * 59.99679 * 22 21 20 44 44 H 1.07998 * 120.00162 * 180.25077 * 23 8 7 45 45 H 1.09004 * 109.47341 * 300.00012 * 26 25 24 46 46 H 1.09002 * 109.47217 * 60.00191 * 26 25 24 47 47 H 1.08997 * 109.46978 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1226 -0.5827 -1.2142 5 6 4.4709 -0.6588 -1.3750 6 6 5.3161 -0.1829 -0.3855 7 6 6.6864 -0.2665 -0.5479 8 6 7.2168 -0.8142 -1.7013 9 6 8.7113 -0.8973 -1.8758 10 7 9.2087 0.3630 -2.4331 11 6 9.6980 1.3339 -1.6006 12 1 9.6535 2.3716 -1.8966 13 6 10.2563 0.9839 -0.3789 14 7 10.2034 1.8235 0.6335 15 14 11.0825 -0.6785 -0.1715 16 1 11.0101 -1.4303 -1.4500 17 1 12.5049 -0.4805 0.2065 18 1 10.3893 -1.4462 0.8941 19 6 9.1826 0.5844 -3.8810 20 6 10.4939 0.0914 -4.4960 21 6 10.4670 0.3232 -6.0082 22 6 11.7781 -0.1705 -6.6233 23 6 6.3792 -1.2909 -2.6922 24 6 5.0047 -1.2153 -2.5334 25 8 4.1793 -1.6833 -3.5076 26 6 4.7974 -2.2402 -4.6694 27 1 -1.0499 0.0001 -0.0003 28 1 3.0096 -0.5787 0.8487 29 1 3.0088 1.0256 0.0776 30 1 4.9043 0.2495 0.5144 31 1 7.3441 0.1005 0.2261 32 1 8.9529 -1.7152 -2.5545 33 1 9.1806 -1.0771 -0.9085 34 1 9.7741 2.6866 0.5258 35 1 8.3479 0.0362 -4.3174 36 1 9.0639 1.6488 -4.0837 37 1 11.3288 0.6396 -4.0596 38 1 10.6127 -0.9730 -4.2933 39 1 9.6321 -0.2249 -6.4449 40 1 10.3484 1.3876 -6.2104 41 1 11.7586 -0.0057 -7.7006 42 1 12.6131 0.3772 -6.1865 43 1 11.8962 -1.2350 -6.4209 44 1 6.7960 -1.7219 -3.5905 45 1 5.4172 -1.4829 -5.1495 46 1 5.4185 -3.0877 -4.3796 47 1 4.0280 -2.5743 -5.3654 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138349084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:59 Heat of formation + Delta-G solvation = 25.015387 kcal Electronic energy + Delta-G solvation = -26697.910999 eV Core-core repulsion = 23042.076028 eV Total energy + Delta-G solvation = -3655.834971 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.29133 -38.39091 -37.44428 -35.95786 -34.14531 -33.47004 -31.72894 -30.41846 -29.92567 -28.40665 -27.39798 -27.09167 -25.07526 -23.87627 -21.97181 -21.41950 -20.95516 -19.90871 -18.58101 -18.26931 -17.48011 -16.71483 -16.23083 -16.07613 -15.31427 -15.21374 -14.72376 -14.53898 -14.36038 -14.34179 -14.20554 -13.51269 -13.19052 -13.13436 -12.77072 -12.51524 -12.34106 -12.23012 -12.07774 -11.71016 -11.42535 -11.22343 -11.08965 -10.96588 -10.79164 -10.74499 -10.65370 -10.56068 -10.49299 -10.23683 -10.19925 -9.94750 -9.62339 -9.27672 -8.46742 -8.30718 -7.39390 -7.07553 -6.35709 -3.30053 1.68781 1.88334 2.24138 2.61237 3.39794 3.49100 3.51754 3.61610 3.64377 4.12169 4.29407 4.54163 5.02169 5.03276 5.10101 5.20431 5.21240 5.24059 5.27063 5.30568 5.45540 5.46336 5.52159 5.55129 5.57456 5.67380 5.70228 5.84042 5.87743 5.98335 6.07376 6.15934 6.23088 6.25961 6.28260 6.42592 6.46856 6.53191 6.63365 6.78552 6.86034 7.03723 7.11673 7.22991 7.26128 7.35753 7.84841 8.04731 8.41577 9.01321 9.60109 10.16924 11.04305 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011651 B = 0.004110 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.650907 B = 6810.213648 C = 8505.985624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.188 4.188 3 C 0.169 3.831 4 O -0.305 6.305 5 C 0.080 3.920 6 C -0.172 4.172 7 C -0.087 4.087 8 C -0.076 4.076 9 C 0.187 3.813 10 N -0.594 5.594 11 C -0.351 4.351 12 H 0.065 0.935 13 C -0.005 4.005 14 N -0.906 5.906 15 Si 1.042 2.958 16 H -0.281 1.281 17 H -0.301 1.301 18 H -0.291 1.291 19 C 0.152 3.848 20 C -0.140 4.140 21 C -0.122 4.122 22 C -0.150 4.150 23 C -0.168 4.168 24 C 0.092 3.908 25 O -0.313 6.313 26 C 0.029 3.971 27 H 0.223 0.777 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.266 0.734 35 H 0.035 0.965 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.046 0.954 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.128 0.872 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.831 -6.938 -7.357 14.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.188 4.188 3 C 0.095 3.905 4 O -0.220 6.220 5 C 0.035 3.965 6 C -0.191 4.191 7 C -0.106 4.106 8 C -0.080 4.080 9 C 0.061 3.939 10 N -0.314 5.314 11 C -0.479 4.479 12 H 0.082 0.918 13 C -0.208 4.208 14 N -0.543 5.543 15 Si 0.874 3.126 16 H -0.207 1.207 17 H -0.229 1.229 18 H -0.219 1.219 19 C 0.026 3.974 20 C -0.180 4.180 21 C -0.160 4.160 22 C -0.207 4.207 23 C -0.187 4.187 24 C 0.047 3.953 25 O -0.227 6.227 26 C -0.066 4.066 27 H 0.240 0.760 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.146 0.854 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.350 -7.914 -6.408 14.520 hybrid contribution -0.602 1.126 -1.021 1.635 sum -10.953 -6.788 -7.429 14.873 Atomic orbital electron populations 1.24926 0.95786 1.00355 0.97998 1.22405 0.93650 1.00816 1.01912 1.19242 0.84645 0.99245 0.87401 1.86135 1.19225 1.78113 1.38515 1.18019 0.81775 1.02658 0.94003 1.21046 0.94316 1.04939 0.98793 1.20926 0.93573 0.97817 0.98313 1.20802 0.98592 0.95912 0.92696 1.20099 0.86978 0.89156 0.97677 1.44129 1.69833 1.16480 1.00956 1.20064 1.38558 0.88207 1.01077 0.91768 1.26027 0.97602 1.05222 0.91916 1.70879 1.44391 1.09941 1.29107 0.84063 0.76788 0.76541 0.75218 1.20701 1.22945 1.21874 1.20847 0.93825 0.98581 0.84126 1.22223 1.01552 1.01032 0.93194 1.21503 0.97033 1.00703 0.96793 1.21767 0.98268 1.01029 0.99650 1.20913 0.90522 1.06130 1.01147 1.18123 0.88892 0.99966 0.88274 1.86117 1.34016 1.75282 1.27264 1.22978 0.99430 0.97813 0.86422 0.76030 0.89696 0.89647 0.85295 0.84914 0.93452 0.92485 0.92388 0.94671 0.93613 0.91750 0.93067 0.92832 0.92487 0.93518 0.92859 0.93102 0.85438 0.92870 0.92934 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 19.25 29.55 0.57 -1.24 16 2 C -0.19 -2.39 13.73 -37.12 -0.51 -2.90 16 3 C 0.17 2.20 5.21 34.37 0.18 2.38 16 4 O -0.30 -5.08 9.88 -34.25 -0.34 -5.42 16 5 C 0.08 1.40 6.70 -39.12 -0.26 1.14 16 6 C -0.17 -2.95 9.04 -39.46 -0.36 -3.30 16 7 C -0.09 -1.72 9.71 -39.57 -0.38 -2.10 16 8 C -0.08 -1.50 5.46 -104.62 -0.57 -2.07 16 9 C 0.19 3.93 4.06 -5.19 -0.02 3.91 16 10 N -0.59 -13.54 2.22 -174.62 -0.39 -13.93 16 11 C -0.35 -9.36 9.81 -15.06 -0.15 -9.51 16 12 H 0.06 1.87 8.06 -52.49 -0.42 1.45 16 13 C 0.00 -0.13 5.23 -17.43 -0.09 -0.22 16 14 N -0.91 -26.65 13.71 55.49 0.76 -25.89 16 15 Si 1.04 25.05 25.52 -169.99 -4.34 20.71 16 16 H -0.28 -6.26 6.25 56.52 0.35 -5.91 16 17 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 19 C 0.15 2.97 5.69 -4.04 -0.02 2.94 16 20 C -0.14 -2.44 5.54 -26.73 -0.15 -2.58 16 21 C -0.12 -1.70 5.93 -26.73 -0.16 -1.86 16 22 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 23 C -0.17 -2.90 8.57 -39.46 -0.34 -3.24 16 24 C 0.09 1.62 6.70 -39.12 -0.26 1.36 16 25 O -0.31 -5.10 10.28 -34.24 -0.35 -5.45 16 26 C 0.03 0.33 9.81 101.05 0.99 1.33 16 27 H 0.22 1.35 7.80 -54.09 -0.42 0.93 16 28 H 0.09 0.95 7.66 -51.93 -0.40 0.56 16 29 H 0.09 1.01 7.66 -51.93 -0.40 0.61 16 30 H 0.13 1.84 6.30 -52.48 -0.33 1.51 16 31 H 0.13 2.87 8.06 -52.49 -0.42 2.44 16 32 H 0.05 0.90 8.02 -51.93 -0.42 0.48 16 33 H 0.06 1.29 3.06 -51.93 -0.16 1.13 16 34 H 0.27 7.83 8.73 -40.82 -0.36 7.47 16 35 H 0.03 0.62 7.97 -51.93 -0.41 0.21 16 36 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.13 1.92 6.30 -52.49 -0.33 1.59 16 45 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 46 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 47 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 390.54 15.07 5.89 5.89 Total: -1.00 -31.32 390.54 -7.45 -38.77 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.51 Total: 2.76 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -1.16 Total: -17.43 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.37 Total: -39.82 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -0.69 Total: -10.87 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -4.34 Total: 20.71 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.32 -7.45 -38.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138349084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.782 kcal (2) G-P(sol) polarization free energy of solvation -31.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds