Wall clock time and date at job start Tue Mar 31 2020 12:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47495 * 64.33072 * 3 2 1 5 5 C 1.36002 * 117.00097 * 179.97438 * 4 3 2 6 6 C 1.38561 * 120.07385 * 0.02562 * 5 4 3 7 7 C 1.38238 * 120.00133 * 179.70450 * 6 5 4 8 8 C 1.38261 * 120.14346 * 0.54723 * 7 6 5 9 9 C 1.50695 * 119.92658 * 179.72679 * 8 7 6 10 10 N 1.46504 * 109.47034 * 274.16998 * 9 8 7 11 11 C 1.36937 * 119.99935 * 95.49738 * 10 9 8 12 12 H 1.07997 * 119.99710 * 207.24291 * 11 10 9 13 13 C 1.38812 * 119.99971 * 27.51064 * 11 10 9 14 14 N 1.31622 * 119.99872 * 209.07445 * 13 11 10 15 15 Si 1.86794 * 119.99939 * 29.07964 * 13 11 10 16 16 H 1.48497 * 109.47542 * 0.05418 * 15 13 11 17 17 H 1.48506 * 109.47013 * 120.05739 * 15 13 11 18 18 H 1.48506 * 109.46938 * 240.05540 * 15 13 11 19 19 C 1.46497 * 119.99912 * 275.49773 * 10 9 8 20 20 C 1.52999 * 109.46957 * 269.99656 * 19 10 9 21 21 C 1.53004 * 109.47253 * 180.02562 * 20 19 10 22 22 C 1.53005 * 109.47336 * 180.02562 * 21 20 19 23 23 C 1.38236 * 120.14484 * 359.44750 * 8 7 6 24 24 C 1.38564 * 120.00140 * 0.27702 * 23 8 7 25 25 O 1.35999 * 120.07566 * 179.97438 * 24 23 8 26 26 C 1.42899 * 116.99760 * 359.97438 * 25 24 23 27 27 H 4.38440 * 5.44500 * 180.02562 * 4 1 2 28 28 H 1.09006 * 109.47449 * 304.32832 * 3 2 1 29 29 H 1.09003 * 109.47165 * 184.33089 * 3 2 1 30 30 H 1.08004 * 119.99729 * 359.97438 * 6 5 4 31 31 H 1.07996 * 119.92933 * 180.29025 * 7 6 5 32 32 H 1.08999 * 109.47304 * 154.16795 * 9 8 7 33 33 H 1.09006 * 109.47243 * 34.16920 * 9 8 7 34 34 H 0.96999 * 120.00126 * 0.02562 * 14 13 11 35 35 H 1.08990 * 109.47288 * 29.99740 * 19 10 9 36 36 H 1.09002 * 109.47321 * 150.00134 * 19 10 9 37 37 H 1.08998 * 109.47486 * 300.00152 * 20 19 10 38 38 H 1.09002 * 109.47164 * 59.99817 * 20 19 10 39 39 H 1.09004 * 109.46919 * 299.99882 * 21 20 19 40 40 H 1.08995 * 109.47002 * 59.99698 * 21 20 19 41 41 H 1.08995 * 109.46669 * 179.97438 * 22 21 20 42 42 H 1.08996 * 109.46378 * 300.00202 * 22 21 20 43 43 H 1.09002 * 109.46928 * 59.99679 * 22 21 20 44 44 H 1.07998 * 120.00162 * 180.25077 * 23 8 7 45 45 H 1.09004 * 109.47341 * 300.00012 * 26 25 24 46 46 H 1.09002 * 109.47217 * 60.00191 * 26 25 24 47 47 H 1.08997 * 109.46978 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1226 -0.5827 -1.2142 5 6 4.4709 -0.6588 -1.3750 6 6 5.3161 -0.1829 -0.3855 7 6 6.6864 -0.2665 -0.5479 8 6 7.2168 -0.8142 -1.7013 9 6 8.7113 -0.8973 -1.8758 10 7 9.2087 0.3630 -2.4331 11 6 9.6980 1.3339 -1.6006 12 1 9.6535 2.3716 -1.8966 13 6 10.2563 0.9839 -0.3789 14 7 10.2034 1.8235 0.6335 15 14 11.0825 -0.6785 -0.1715 16 1 11.0101 -1.4303 -1.4500 17 1 12.5049 -0.4805 0.2065 18 1 10.3893 -1.4462 0.8941 19 6 9.1826 0.5844 -3.8810 20 6 10.4939 0.0914 -4.4960 21 6 10.4670 0.3232 -6.0082 22 6 11.7781 -0.1705 -6.6233 23 6 6.3792 -1.2909 -2.6922 24 6 5.0047 -1.2153 -2.5334 25 8 4.1793 -1.6833 -3.5076 26 6 4.7974 -2.2402 -4.6694 27 1 -1.0499 0.0001 -0.0003 28 1 3.0096 -0.5787 0.8487 29 1 3.0088 1.0256 0.0776 30 1 4.9043 0.2495 0.5144 31 1 7.3441 0.1005 0.2261 32 1 8.9529 -1.7152 -2.5545 33 1 9.1806 -1.0771 -0.9085 34 1 9.7741 2.6866 0.5258 35 1 8.3479 0.0362 -4.3174 36 1 9.0639 1.6488 -4.0837 37 1 11.3288 0.6396 -4.0596 38 1 10.6127 -0.9730 -4.2933 39 1 9.6321 -0.2249 -6.4449 40 1 10.3484 1.3876 -6.2104 41 1 11.7586 -0.0057 -7.7006 42 1 12.6131 0.3772 -6.1865 43 1 11.8962 -1.2350 -6.4209 44 1 6.7960 -1.7219 -3.5905 45 1 5.4172 -1.4829 -5.1495 46 1 5.4185 -3.0877 -4.3796 47 1 4.0280 -2.5743 -5.3654 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138349084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:58 Heat of formation + Delta-G solvation = 8.285110 kcal Electronic energy + Delta-G solvation = -26698.636478 eV Core-core repulsion = 23042.076028 eV Total energy + Delta-G solvation = -3656.560451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.59246 -39.59515 -38.94530 -37.39754 -35.55075 -34.44625 -33.64559 -31.81488 -31.24358 -29.74222 -28.56774 -28.17255 -26.67906 -25.46556 -23.26865 -22.86731 -22.29768 -21.48931 -19.79451 -19.38929 -19.24952 -18.06773 -17.47598 -17.23670 -16.80362 -16.35289 -16.21846 -15.96618 -15.77688 -15.69950 -15.51645 -14.97593 -14.72272 -14.35222 -14.09471 -13.84384 -13.70607 -13.58584 -13.35852 -13.13844 -12.76498 -12.53646 -12.48262 -12.25428 -12.09419 -12.06562 -11.95796 -11.91283 -11.73735 -11.58587 -11.54920 -11.29650 -11.22368 -11.10085 -10.52804 -9.67105 -9.05429 -8.74676 -8.50408 -5.41535 0.31124 0.45465 1.27626 1.45418 1.57043 1.71625 1.74375 2.36533 2.55305 2.61688 2.67795 3.14768 3.40198 3.51948 3.82885 3.94210 3.98918 4.14627 4.17249 4.25319 4.25387 4.29117 4.38838 4.41286 4.43578 4.47475 4.52938 4.56680 4.74831 4.77152 4.81433 4.83374 4.93097 4.99096 5.05188 5.06769 5.16617 5.18460 5.32112 5.40689 5.49579 5.60022 5.69541 5.75677 5.90583 6.06054 6.31618 6.50930 6.59764 6.95594 7.65820 8.13386 8.86546 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011651 B = 0.004110 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.650907 B = 6810.213648 C = 8505.985624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.248 4.248 3 C 0.163 3.837 4 O -0.318 6.318 5 C 0.078 3.922 6 C -0.168 4.168 7 C -0.110 4.110 8 C -0.092 4.092 9 C 0.184 3.816 10 N -0.606 5.606 11 C -0.333 4.333 12 H 0.024 0.976 13 C -0.051 4.051 14 N -0.942 5.942 15 Si 1.083 2.917 16 H -0.251 1.251 17 H -0.308 1.308 18 H -0.286 1.286 19 C 0.151 3.849 20 C -0.131 4.131 21 C -0.116 4.116 22 C -0.148 4.148 23 C -0.159 4.159 24 C 0.091 3.909 25 O -0.328 6.328 26 C 0.018 3.982 27 H 0.263 0.737 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.150 0.850 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.250 0.750 35 H 0.060 0.940 36 H 0.027 0.973 37 H 0.035 0.965 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.043 0.957 43 H 0.056 0.944 44 H 0.155 0.845 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.635 -9.361 -9.715 18.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.248 4.248 3 C 0.089 3.911 4 O -0.234 6.234 5 C 0.033 3.967 6 C -0.186 4.186 7 C -0.130 4.130 8 C -0.095 4.095 9 C 0.059 3.941 10 N -0.327 5.327 11 C -0.462 4.462 12 H 0.042 0.958 13 C -0.248 4.248 14 N -0.583 5.583 15 Si 0.910 3.090 16 H -0.175 1.175 17 H -0.237 1.237 18 H -0.213 1.213 19 C 0.025 3.975 20 C -0.171 4.171 21 C -0.155 4.155 22 C -0.205 4.205 23 C -0.178 4.178 24 C 0.045 3.955 25 O -0.242 6.242 26 C -0.077 4.077 27 H 0.279 0.721 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.168 0.832 31 H 0.121 0.879 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.172 0.828 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.182 -10.357 -8.815 18.258 hybrid contribution -0.298 1.918 -0.383 1.979 sum -12.479 -8.439 -9.198 17.651 Atomic orbital electron populations 1.25922 0.96620 0.97693 0.95188 1.22685 0.94254 1.03341 1.04504 1.19430 0.85513 0.99619 0.86503 1.86114 1.18505 1.78340 1.40413 1.18192 0.82345 1.02103 0.94084 1.21151 0.93262 1.04491 0.99734 1.20795 0.94377 0.99490 0.98303 1.20656 0.97999 0.97319 0.93522 1.20154 0.87836 0.88786 0.97321 1.44196 1.70300 1.16218 1.02030 1.19821 1.37451 0.87509 1.01447 0.95814 1.27013 0.98199 1.07719 0.91855 1.70995 1.46884 1.10032 1.30373 0.83551 0.75161 0.73613 0.76683 1.17508 1.23747 1.21315 1.20961 0.95983 0.98078 0.82435 1.22077 0.98884 1.00579 0.95531 1.21454 0.98834 1.01050 0.94118 1.21747 0.96853 1.01161 1.00762 1.21020 0.90210 1.05360 1.01190 1.18290 0.89151 0.99392 0.88651 1.86114 1.34725 1.75244 1.28153 1.23345 1.00818 0.98282 0.85223 0.72129 0.88391 0.89077 0.83201 0.87949 0.90581 0.94267 0.94121 0.92140 0.95416 0.94595 0.92546 0.90861 0.92744 0.91468 0.93737 0.92500 0.82774 0.92180 0.91551 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 19.25 74.32 1.43 -1.07 16 2 C -0.25 -5.98 13.73 31.13 0.43 -5.56 16 3 C 0.16 4.15 5.21 70.18 0.37 4.52 16 4 O -0.32 -10.37 9.88 -79.71 -0.79 -11.16 16 5 C 0.08 2.67 6.70 22.57 0.15 2.82 16 6 C -0.17 -5.78 9.04 22.35 0.20 -5.57 16 7 C -0.11 -4.46 9.71 22.28 0.22 -4.24 16 8 C -0.09 -3.54 5.46 -19.86 -0.11 -3.65 16 9 C 0.18 7.54 4.06 85.63 0.35 7.89 16 10 N -0.61 -27.67 2.22 -706.36 -1.57 -29.24 16 11 C -0.33 -18.48 9.81 84.03 0.82 -17.66 16 12 H 0.02 1.49 8.06 -2.91 -0.02 1.47 16 13 C -0.05 -2.91 5.23 84.86 0.44 -2.47 16 14 N -0.94 -58.41 13.71 21.65 0.30 -58.11 16 15 Si 1.08 51.55 25.52 68.60 1.75 53.30 16 16 H -0.25 -10.55 6.25 99.48 0.62 -9.93 16 17 H -0.31 -14.91 7.11 99.48 0.71 -14.21 16 18 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 19 C 0.15 5.71 5.69 86.38 0.49 6.21 16 20 C -0.13 -4.35 5.54 30.60 0.17 -4.18 16 21 C -0.12 -2.93 5.93 30.60 0.18 -2.75 16 22 C -0.15 -3.22 9.91 71.98 0.71 -2.51 16 23 C -0.16 -5.14 8.57 22.35 0.19 -4.95 16 24 C 0.09 3.02 6.70 22.57 0.15 3.17 16 25 O -0.33 -9.87 10.28 -79.68 -0.82 -10.69 16 26 C 0.02 0.34 9.81 113.37 1.11 1.45 16 27 H 0.26 2.07 7.80 -4.42 -0.03 2.04 16 28 H 0.10 2.15 7.66 -2.38 -0.02 2.13 16 29 H 0.09 2.14 7.66 -2.39 -0.02 2.12 16 30 H 0.15 4.31 6.30 -2.91 -0.02 4.30 16 31 H 0.10 4.72 8.06 -2.91 -0.02 4.69 16 32 H 0.08 2.65 8.02 -2.39 -0.02 2.63 16 33 H 0.04 1.76 3.06 -2.38 -0.01 1.75 16 34 H 0.25 15.74 8.73 -92.71 -0.81 14.93 16 35 H 0.06 1.98 7.97 -2.39 -0.02 1.96 16 36 H 0.03 1.13 8.04 -2.39 -0.02 1.11 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 40 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.15 4.05 6.30 -2.91 -0.02 4.04 16 45 H 0.06 1.10 7.66 -2.38 -0.02 1.08 16 46 H 0.07 1.12 7.66 -2.39 -0.02 1.10 16 47 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -71.67 390.54 7.00 -64.67 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.81 Total: 19.79 kcal Atomic # 6 Polarization: -35.86 SS G_CDS: 7.31 Total: -28.55 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -1.27 Total: -87.35 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -1.61 Total: -21.85 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 1.75 Total: 53.30 kcal Total: -71.67 7.00 -64.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138349084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.954 kcal (2) G-P(sol) polarization free energy of solvation -71.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds