Wall clock time and date at job start Tue Mar 31 2020 11:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47158 * 2 1 4 4 C 1.53001 * 109.46919 * 240.00091 * 2 1 3 5 5 C 1.50705 * 109.47195 * 60.00264 * 4 2 1 6 6 H 1.08001 * 119.99858 * 359.97438 * 5 4 2 7 7 C 1.37869 * 119.99893 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00527 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 119.99752 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46902 * 60.00196 * 9 7 5 11 11 H 1.48499 * 109.46980 * 179.97438 * 9 7 5 12 12 H 1.48488 * 109.47401 * 299.99794 * 9 7 5 13 13 C 1.50695 * 109.47309 * 120.00035 * 2 1 3 14 14 C 1.38367 * 119.85137 * 119.72854 * 13 2 1 15 15 C 1.37964 * 120.14270 * 179.72809 * 14 13 2 16 16 C 1.39582 * 119.85074 * 0.54086 * 15 14 13 17 17 C 1.47845 * 120.14085 * 179.70810 * 16 15 14 18 18 O 1.21554 * 119.99740 * 172.42825 * 17 16 15 19 19 N 1.34778 * 120.00145 * 352.42542 * 17 16 15 20 20 C 1.47061 * 120.81037 * 184.85998 * 19 17 16 21 21 C 1.52888 * 108.65191 * 230.30730 * 20 19 17 22 22 C 1.53144 * 109.08532 * 307.52380 * 21 20 19 23 23 C 1.53068 * 109.43165 * 59.60842 * 22 21 20 24 24 O 1.42128 * 120.81057 * 5.14201 * 19 17 16 25 25 C 1.39575 * 119.71290 * 359.73266 * 16 15 14 26 26 C 1.37956 * 119.85025 * 359.97438 * 25 16 15 27 27 H 1.09004 * 109.46660 * 300.00124 * 1 2 3 28 28 H 1.09001 * 109.47325 * 59.99802 * 1 2 3 29 29 H 1.09001 * 109.46992 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47097 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47164 * 300.00296 * 3 2 1 32 32 H 1.08995 * 109.46877 * 60.00226 * 3 2 1 33 33 H 1.09003 * 109.47421 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47314 * 300.00133 * 4 2 1 35 35 H 0.97001 * 120.00322 * 180.02562 * 8 7 5 36 36 H 1.07992 * 119.92937 * 359.97438 * 14 13 2 37 37 H 1.08000 * 120.07299 * 180.24748 * 15 14 13 38 38 H 1.09004 * 109.67753 * 350.10596 * 20 19 17 39 39 H 1.08998 * 109.67471 * 110.64048 * 20 19 17 40 40 H 1.08993 * 109.62371 * 187.57017 * 21 20 19 41 41 H 1.08995 * 109.38732 * 67.33586 * 21 20 19 42 42 H 1.09000 * 109.47924 * 299.61971 * 22 21 20 43 43 H 1.09002 * 109.47475 * 179.59967 * 22 21 20 44 44 H 1.09005 * 109.48994 * 180.02562 * 23 22 21 45 45 H 1.08997 * 109.51707 * 59.98669 * 23 22 21 46 46 H 1.07996 * 120.07578 * 179.97438 * 25 16 15 47 47 H 1.08004 * 119.92374 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9164 0.8671 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6263 -1.5514 -3.8527 9 14 1.2470 0.3982 -5.2572 10 1 1.7421 1.7983 -5.2577 11 1 1.7421 -0.3018 -6.4697 12 1 -0.2379 0.3982 -5.2567 13 6 2.0324 -0.7104 1.2304 14 6 2.8230 -1.8384 1.0999 15 6 3.2909 -2.4902 2.2222 16 6 2.9556 -2.0159 3.4914 17 6 3.4480 -2.7132 4.6985 18 8 3.2721 -2.2240 5.7973 19 7 4.0921 -3.8912 4.5807 20 6 4.4956 -4.6517 5.7730 21 6 5.9715 -5.0269 5.6373 22 6 6.1902 -5.7193 4.2890 23 6 5.7849 -4.7711 3.1578 24 8 4.4031 -4.4261 3.3011 25 6 2.1529 -0.8808 3.6161 26 6 1.6967 -0.2349 2.4856 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7209 -1.2496 34 1 1.6766 -1.7489 -1.2493 35 1 2.8606 -1.8828 -4.7338 36 1 3.0778 -2.2070 0.1173 37 1 3.9112 -3.3682 2.1190 38 1 4.3540 -4.0398 6.6639 39 1 3.8953 -5.5582 5.8506 40 1 6.2530 -5.7030 6.4445 41 1 6.5803 -4.1241 5.6867 42 1 5.5822 -6.6227 4.2414 43 1 7.2424 -5.9833 4.1825 44 1 5.9398 -5.2632 2.1976 45 1 6.3923 -3.8673 3.2050 46 1 1.8895 -0.5090 4.5952 47 1 1.0752 0.6432 2.5807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148900681.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:58 Heat of formation + Delta-G solvation = -7.861286 kcal Electronic energy + Delta-G solvation = -26895.823664 eV Core-core repulsion = 23238.563053 eV Total energy + Delta-G solvation = -3657.260611 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.43104 -39.09522 -38.12492 -35.82536 -34.30954 -33.14285 -32.43719 -30.65447 -29.96374 -27.65420 -27.07900 -26.40821 -25.03286 -24.06337 -22.99011 -21.69004 -21.28241 -20.05358 -18.55318 -18.00279 -17.19468 -16.36338 -15.78848 -15.59558 -15.41573 -14.93433 -14.72396 -14.55332 -14.37267 -14.07483 -13.82066 -13.52137 -13.40794 -13.22603 -12.88310 -12.56906 -12.22459 -12.08722 -11.97515 -11.67932 -11.57645 -11.34119 -11.14471 -11.05631 -10.98900 -10.80825 -10.62265 -10.52993 -10.37356 -10.17387 -9.95665 -9.71478 -9.10162 -9.05542 -8.89452 -8.54490 -8.35254 -8.23876 -6.00294 -4.00756 1.15678 1.68646 1.83563 2.90672 3.32571 3.37481 3.39541 3.74723 4.24165 4.33404 4.39372 4.42642 4.45327 4.76542 4.95518 4.99527 5.19205 5.26854 5.32761 5.36031 5.38466 5.42102 5.43665 5.52665 5.56916 5.77097 5.81288 5.90457 5.99198 6.01192 6.09420 6.28132 6.39112 6.42371 6.48171 6.60629 6.67242 6.67846 6.79203 6.90643 7.09432 7.11541 7.22580 7.31158 7.39752 7.63304 7.76365 7.98354 7.98900 8.42323 9.03451 9.62341 11.11204 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018907 B = 0.003129 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.554897 B = 8947.169168 C =10166.018442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.034 4.034 3 C -0.123 4.123 4 C 0.034 3.966 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C -0.018 4.018 14 C -0.131 4.131 15 C -0.085 4.085 16 C -0.166 4.166 17 C 0.589 3.411 18 O -0.533 6.533 19 N -0.478 5.478 20 C 0.103 3.897 21 C -0.140 4.140 22 C -0.151 4.151 23 C 0.019 3.981 24 O -0.132 6.132 25 C -0.061 4.061 26 C -0.139 4.139 27 H 0.034 0.966 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.034 0.966 33 H 0.019 0.981 34 H 0.020 0.980 35 H 0.260 0.740 36 H 0.141 0.859 37 H 0.155 0.845 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.118 0.882 45 H 0.065 0.935 46 H 0.126 0.874 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.117 -6.918 17.158 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.035 4.035 3 C -0.180 4.180 4 C -0.003 4.003 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.018 4.018 14 C -0.149 4.149 15 C -0.103 4.103 16 C -0.169 4.169 17 C 0.383 3.617 18 O -0.411 6.411 19 N -0.259 5.259 20 C -0.018 4.018 21 C -0.178 4.178 22 C -0.189 4.189 23 C -0.059 4.059 24 O -0.134 6.134 25 C -0.080 4.080 26 C -0.157 4.157 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.159 0.841 37 H 0.172 0.828 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.135 0.865 45 H 0.084 0.916 46 H 0.144 0.856 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.962 -6.809 17.460 19.666 hybrid contribution 0.062 0.211 -1.066 1.088 sum 6.024 -6.598 16.395 18.671 Atomic orbital electron populations 1.21754 0.94411 1.01199 1.00656 1.19794 0.95335 0.95262 0.93061 1.21751 1.00456 0.95134 1.00662 1.19225 0.96194 0.95210 0.89634 1.21209 1.31125 1.12079 0.90646 0.92314 1.24984 0.95303 0.95063 0.99004 1.69936 1.37048 1.23060 1.23495 0.86728 0.79205 0.79811 0.82679 1.20326 1.21416 1.20311 1.20613 0.92635 0.93485 0.95096 1.21534 0.98098 0.95722 0.99542 1.22454 0.97345 0.99408 0.91118 1.19540 1.05484 0.99382 0.92453 1.18447 0.76303 0.77489 0.89487 1.90775 1.58803 1.63270 1.28282 1.50123 1.58239 1.20712 0.96834 1.21923 0.95321 0.97028 0.87480 1.21903 0.96154 1.01564 0.98196 1.22056 1.02905 0.99200 0.94737 1.23267 0.83504 0.98920 1.00168 1.90703 1.26524 1.81938 1.14205 1.21101 0.94832 0.93219 0.98892 1.20969 1.02030 1.00933 0.91760 0.94674 0.91299 0.93427 0.93464 0.91300 0.94667 0.96252 0.96202 0.93036 0.84088 0.82827 0.87528 0.90612 0.89785 0.91043 0.90478 0.90114 0.86477 0.91639 0.85649 0.85858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 8.03 37.16 0.30 -1.99 16 2 C -0.03 -0.68 0.61 -155.66 -0.09 -0.78 16 3 C -0.12 -2.28 8.03 37.16 0.30 -1.98 16 4 C 0.03 0.83 2.70 -27.88 -0.08 0.75 16 5 C -0.51 -13.57 7.65 -34.44 -0.26 -13.83 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -25.95 13.29 55.43 0.74 -25.21 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C -0.02 -0.33 4.77 -104.53 -0.50 -0.83 16 14 C -0.13 -2.39 8.96 -39.63 -0.36 -2.75 16 15 C -0.09 -1.39 9.21 -39.18 -0.36 -1.75 16 16 C -0.17 -2.69 5.87 -104.97 -0.62 -3.31 16 17 C 0.59 9.12 7.75 -12.33 -0.10 9.03 16 18 O -0.53 -9.14 15.82 5.32 0.08 -9.05 16 19 N -0.48 -6.07 3.60 -60.92 -0.22 -6.29 16 20 C 0.10 0.97 6.60 -3.79 -0.03 0.94 16 21 C -0.14 -0.97 6.12 -26.71 -0.16 -1.13 16 22 C -0.15 -0.99 6.06 -26.62 -0.16 -1.15 16 23 C 0.02 0.16 7.04 37.19 0.26 0.42 16 24 O -0.13 -1.57 7.41 -11.73 -0.09 -1.66 16 25 C -0.06 -0.98 9.59 -39.19 -0.38 -1.36 16 26 C -0.14 -2.26 8.69 -39.64 -0.34 -2.60 16 27 H 0.03 0.56 7.38 -51.93 -0.38 0.18 16 28 H 0.07 1.35 6.62 -51.93 -0.34 1.00 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 32 H 0.03 0.56 7.37 -51.93 -0.38 0.18 16 33 H 0.02 0.50 7.52 -51.93 -0.39 0.11 16 34 H 0.02 0.52 7.49 -51.93 -0.39 0.13 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.14 2.76 5.87 -52.49 -0.31 2.45 16 37 H 0.16 2.26 4.30 -55.64 -0.24 2.02 16 38 H 0.11 1.06 7.05 -51.93 -0.37 0.69 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.13 1.85 7.67 -52.49 -0.40 1.45 16 47 H 0.12 1.79 7.08 -52.48 -0.37 1.42 16 LS Contribution 366.36 15.07 5.52 5.52 Total: -1.00 -30.79 366.36 -8.81 -39.60 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -7.16 Total: 1.82 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -2.67 Total: -20.83 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.52 Total: -31.50 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.00 Total: -10.71 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.79 -8.81 -39.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148900681.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.743 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds