Wall clock time and date at job start Tue Mar 31 2020 11:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47158 * 2 1 4 4 C 1.53001 * 109.46919 * 240.00091 * 2 1 3 5 5 C 1.50705 * 109.47195 * 60.00264 * 4 2 1 6 6 H 1.08001 * 119.99858 * 359.97438 * 5 4 2 7 7 C 1.37869 * 119.99893 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00527 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 119.99752 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46902 * 60.00196 * 9 7 5 11 11 H 1.48499 * 109.46980 * 179.97438 * 9 7 5 12 12 H 1.48488 * 109.47401 * 299.99794 * 9 7 5 13 13 C 1.50695 * 109.47309 * 120.00035 * 2 1 3 14 14 C 1.38367 * 119.85137 * 119.72854 * 13 2 1 15 15 C 1.37964 * 120.14270 * 179.72809 * 14 13 2 16 16 C 1.39582 * 119.85074 * 0.54086 * 15 14 13 17 17 C 1.47845 * 120.14085 * 179.70810 * 16 15 14 18 18 O 1.21554 * 119.99740 * 172.42825 * 17 16 15 19 19 N 1.34778 * 120.00145 * 352.42542 * 17 16 15 20 20 C 1.47061 * 120.81037 * 184.85998 * 19 17 16 21 21 C 1.52888 * 108.65191 * 230.30730 * 20 19 17 22 22 C 1.53144 * 109.08532 * 307.52380 * 21 20 19 23 23 C 1.53068 * 109.43165 * 59.60842 * 22 21 20 24 24 O 1.42128 * 120.81057 * 5.14201 * 19 17 16 25 25 C 1.39575 * 119.71290 * 359.73266 * 16 15 14 26 26 C 1.37956 * 119.85025 * 359.97438 * 25 16 15 27 27 H 1.09004 * 109.46660 * 300.00124 * 1 2 3 28 28 H 1.09001 * 109.47325 * 59.99802 * 1 2 3 29 29 H 1.09001 * 109.46992 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47097 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47164 * 300.00296 * 3 2 1 32 32 H 1.08995 * 109.46877 * 60.00226 * 3 2 1 33 33 H 1.09003 * 109.47421 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47314 * 300.00133 * 4 2 1 35 35 H 0.97001 * 120.00322 * 180.02562 * 8 7 5 36 36 H 1.07992 * 119.92937 * 359.97438 * 14 13 2 37 37 H 1.08000 * 120.07299 * 180.24748 * 15 14 13 38 38 H 1.09004 * 109.67753 * 350.10596 * 20 19 17 39 39 H 1.08998 * 109.67471 * 110.64048 * 20 19 17 40 40 H 1.08993 * 109.62371 * 187.57017 * 21 20 19 41 41 H 1.08995 * 109.38732 * 67.33586 * 21 20 19 42 42 H 1.09000 * 109.47924 * 299.61971 * 22 21 20 43 43 H 1.09002 * 109.47475 * 179.59967 * 22 21 20 44 44 H 1.09005 * 109.48994 * 180.02562 * 23 22 21 45 45 H 1.08997 * 109.51707 * 59.98669 * 23 22 21 46 46 H 1.07996 * 120.07578 * 179.97438 * 25 16 15 47 47 H 1.08004 * 119.92374 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9164 0.8671 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6263 -1.5514 -3.8527 9 14 1.2470 0.3982 -5.2572 10 1 1.7421 1.7983 -5.2577 11 1 1.7421 -0.3018 -6.4697 12 1 -0.2379 0.3982 -5.2567 13 6 2.0324 -0.7104 1.2304 14 6 2.8230 -1.8384 1.0999 15 6 3.2909 -2.4902 2.2222 16 6 2.9556 -2.0159 3.4914 17 6 3.4480 -2.7132 4.6985 18 8 3.2721 -2.2240 5.7973 19 7 4.0921 -3.8912 4.5807 20 6 4.4956 -4.6517 5.7730 21 6 5.9715 -5.0269 5.6373 22 6 6.1902 -5.7193 4.2890 23 6 5.7849 -4.7711 3.1578 24 8 4.4031 -4.4261 3.3011 25 6 2.1529 -0.8808 3.6161 26 6 1.6967 -0.2349 2.4856 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7209 -1.2496 34 1 1.6766 -1.7489 -1.2493 35 1 2.8606 -1.8828 -4.7338 36 1 3.0778 -2.2070 0.1173 37 1 3.9112 -3.3682 2.1190 38 1 4.3540 -4.0398 6.6639 39 1 3.8953 -5.5582 5.8506 40 1 6.2530 -5.7030 6.4445 41 1 6.5803 -4.1241 5.6867 42 1 5.5822 -6.6227 4.2414 43 1 7.2424 -5.9833 4.1825 44 1 5.9398 -5.2632 2.1976 45 1 6.3923 -3.8673 3.2050 46 1 1.8895 -0.5090 4.5952 47 1 1.0752 0.6432 2.5807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148900681.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:57 Heat of formation + Delta-G solvation = -23.587868 kcal Electronic energy + Delta-G solvation = -26896.505620 eV Core-core repulsion = 23238.563053 eV Total energy + Delta-G solvation = -3657.942567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.55010 -40.36001 -39.18140 -37.34027 -35.09629 -34.46478 -34.03481 -31.99672 -31.31599 -29.09450 -28.39181 -27.91668 -26.01411 -25.55298 -24.29697 -23.10853 -22.34664 -20.89116 -20.10703 -19.15493 -18.32827 -18.13657 -16.83782 -16.78536 -16.53935 -16.42010 -15.78992 -15.65965 -15.44259 -15.37826 -15.03750 -14.94355 -14.58180 -14.41618 -14.18429 -13.87336 -13.77408 -13.60148 -13.51010 -12.92823 -12.70491 -12.69273 -12.37574 -12.31724 -12.30821 -12.18746 -11.98486 -11.90311 -11.74391 -11.65452 -11.53134 -10.95330 -10.83617 -10.70041 -10.48919 -10.06197 -9.85528 -9.56974 -8.12212 -6.19066 -0.13601 0.50973 0.74355 1.42953 1.44497 1.51544 1.67492 2.45220 2.77056 2.93434 3.22138 3.68886 3.76407 3.81231 3.84919 3.96290 3.98407 4.17088 4.24906 4.32827 4.38160 4.41636 4.54847 4.57694 4.59890 4.66408 4.74751 4.76276 4.95958 4.96608 5.01134 5.02467 5.08667 5.12741 5.19494 5.22818 5.31568 5.36296 5.41052 5.43788 5.49899 5.54903 5.56025 5.81779 5.86169 5.92718 6.03265 6.17864 6.35683 6.85603 6.95086 7.48084 8.99741 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018907 B = 0.003129 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.554897 B = 8947.169168 C =10166.018442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.031 4.031 3 C -0.118 4.118 4 C 0.047 3.953 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.953 3.047 10 H -0.268 1.268 11 H -0.289 1.289 12 H -0.269 1.269 13 C -0.033 4.033 14 C -0.150 4.150 15 C -0.081 4.081 16 C -0.171 4.171 17 C 0.584 3.416 18 O -0.555 6.555 19 N -0.475 5.475 20 C 0.096 3.904 21 C -0.135 4.135 22 C -0.145 4.145 23 C 0.009 3.991 24 O -0.149 6.149 25 C -0.060 4.060 26 C -0.131 4.131 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.056 0.944 32 H 0.069 0.931 33 H -0.010 1.010 34 H -0.011 1.011 35 H 0.260 0.740 36 H 0.115 0.885 37 H 0.167 0.833 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.134 0.866 45 H 0.061 0.939 46 H 0.142 0.858 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.982 -6.599 18.633 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.031 4.031 3 C -0.175 4.175 4 C 0.010 3.990 5 C -0.558 4.558 6 H 0.086 0.914 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.779 3.221 10 H -0.193 1.193 11 H -0.215 1.215 12 H -0.194 1.194 13 C -0.034 4.034 14 C -0.168 4.168 15 C -0.099 4.099 16 C -0.174 4.174 17 C 0.377 3.623 18 O -0.436 6.436 19 N -0.254 5.254 20 C -0.023 4.023 21 C -0.172 4.172 22 C -0.183 4.183 23 C -0.068 4.068 24 O -0.151 6.151 25 C -0.079 4.079 26 C -0.148 4.148 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.008 0.992 34 H 0.008 0.992 35 H 0.068 0.932 36 H 0.132 0.868 37 H 0.184 0.816 38 H 0.119 0.881 39 H 0.108 0.892 40 H 0.129 0.871 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.121 0.879 44 H 0.152 0.848 45 H 0.079 0.921 46 H 0.159 0.841 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.839 -6.507 18.938 20.859 hybrid contribution 0.181 0.006 -1.474 1.485 sum 6.020 -6.502 17.465 19.584 Atomic orbital electron populations 1.21704 0.93290 1.00845 1.01736 1.19647 0.96202 0.95635 0.91578 1.21699 0.99815 0.94295 1.01733 1.19015 0.94184 0.94040 0.91797 1.21635 1.30540 1.12142 0.91467 0.91395 1.25859 0.95653 0.95840 1.02382 1.70085 1.38630 1.24763 1.24064 0.85676 0.78933 0.78825 0.78675 1.19343 1.21487 1.19366 1.20507 0.93642 0.93812 0.95391 1.21399 0.99542 0.96758 0.99061 1.22554 0.97127 0.99580 0.90623 1.19800 1.05236 0.99630 0.92708 1.18285 0.76876 0.78338 0.88796 1.90756 1.59992 1.64256 1.28598 1.50113 1.57126 1.20037 0.98147 1.22212 0.97403 0.96942 0.85791 1.21910 0.93985 1.01918 0.99438 1.22050 1.04295 0.98564 0.93407 1.23568 0.81619 0.99521 1.02064 1.90628 1.28773 1.81697 1.14026 1.21327 0.94213 0.92864 0.99498 1.21106 1.01744 1.01405 0.90569 0.91240 0.92447 0.94524 0.94492 0.92456 0.91244 0.99209 0.99246 0.93171 0.86750 0.81647 0.88146 0.89207 0.87088 0.91737 0.89943 0.87945 0.84812 0.92069 0.84066 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.31 8.03 71.98 0.58 -3.74 16 2 C -0.03 -1.22 0.61 -52.93 -0.03 -1.25 16 3 C -0.12 -4.29 8.03 71.98 0.58 -3.71 16 4 C 0.05 2.36 2.70 29.85 0.08 2.44 16 5 C -0.52 -28.12 7.65 25.60 0.20 -27.92 16 6 H 0.07 3.48 5.68 -2.91 -0.02 3.47 16 7 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 8 N -0.93 -56.01 13.29 21.44 0.28 -55.72 16 9 Si 0.95 43.68 29.54 68.60 2.03 45.71 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 C -0.03 -1.21 4.77 -19.81 -0.09 -1.31 16 14 C -0.15 -5.69 8.96 22.24 0.20 -5.49 16 15 C -0.08 -2.68 9.21 22.53 0.21 -2.48 16 16 C -0.17 -5.46 5.87 -20.09 -0.12 -5.58 16 17 C 0.58 17.74 7.75 86.79 0.67 18.41 16 18 O -0.56 -18.64 15.82 -3.89 -0.06 -18.70 16 19 N -0.48 -11.65 3.60 -464.92 -1.68 -13.33 16 20 C 0.10 1.65 6.60 86.24 0.57 2.22 16 21 C -0.13 -1.54 6.12 30.61 0.19 -1.35 16 22 C -0.15 -1.53 6.06 30.67 0.19 -1.35 16 23 C 0.01 0.14 7.04 72.00 0.51 0.64 16 24 O -0.15 -3.45 7.41 -39.98 -0.30 -3.75 16 25 C -0.06 -1.83 9.59 22.53 0.22 -1.61 16 26 C -0.13 -4.01 8.69 22.23 0.19 -3.81 16 27 H 0.07 2.03 7.38 -2.38 -0.02 2.01 16 28 H 0.06 2.19 6.62 -2.39 -0.02 2.18 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 2.18 6.62 -2.39 -0.02 2.17 16 32 H 0.07 2.02 7.37 -2.39 -0.02 2.01 16 33 H -0.01 -0.58 7.52 -2.39 -0.02 -0.60 16 34 H -0.01 -0.60 7.49 -2.39 -0.02 -0.62 16 35 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 36 H 0.11 4.90 5.87 -2.91 -0.02 4.88 16 37 H 0.17 4.98 4.30 -52.81 -0.23 4.75 16 38 H 0.10 1.88 7.05 -2.38 -0.02 1.87 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 43 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.13 1.64 8.14 -2.38 -0.02 1.62 16 45 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.14 3.86 7.67 -2.91 -0.02 3.83 16 47 H 0.15 3.77 7.08 -2.91 -0.02 3.75 16 Total: -1.00 -68.22 366.36 5.62 -62.60 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.75 Total: 18.62 kcal Atomic # 6 Polarization: -40.02 SS G_CDS: 4.59 Total: -35.43 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -1.39 Total: -69.05 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.36 Total: -22.45 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -68.22 5.62 -62.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148900681.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.013 kcal (2) G-P(sol) polarization free energy of solvation -68.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds