Wall clock time and date at job start Tue Mar 31 2020 11:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47198 * 2 1 4 4 C 1.53003 * 109.47621 * 239.99686 * 2 1 3 5 5 C 1.50704 * 109.46687 * 60.00044 * 4 2 1 6 6 H 1.08003 * 120.00468 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00051 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99689 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00255 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46794 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46624 * 120.00036 * 9 7 5 12 12 H 1.48501 * 109.47211 * 239.99912 * 9 7 5 13 13 C 1.50703 * 109.47367 * 119.99730 * 2 1 3 14 14 C 1.38357 * 119.85098 * 300.00458 * 13 2 1 15 15 C 1.37962 * 120.14792 * 180.02562 * 14 13 2 16 16 C 1.39577 * 119.84724 * 359.97438 * 15 14 13 17 17 C 1.47841 * 120.14246 * 179.97438 * 16 15 14 18 18 O 1.21554 * 120.00198 * 7.99896 * 17 16 15 19 19 N 1.34777 * 119.99977 * 188.00695 * 17 16 15 20 20 C 1.47585 * 134.49318 * 177.18842 * 19 17 16 21 21 C 1.53941 * 86.11692 * 204.65675 * 20 19 17 22 22 C 1.53005 * 113.74398 * 221.94124 * 21 20 19 23 23 O 1.42898 * 109.47472 * 183.07562 * 22 21 20 24 24 C 1.47931 * 134.50368 * 357.21194 * 19 17 16 25 25 C 1.39573 * 119.71289 * 0.24790 * 16 15 14 26 26 C 1.37958 * 119.85313 * 359.52181 * 25 16 15 27 27 H 1.09000 * 109.47520 * 300.00030 * 1 2 3 28 28 H 1.09002 * 109.47065 * 60.00718 * 1 2 3 29 29 H 1.09000 * 109.46805 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47167 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46703 * 300.00060 * 3 2 1 32 32 H 1.09000 * 109.46909 * 59.99596 * 3 2 1 33 33 H 1.08991 * 109.47528 * 179.97438 * 4 2 1 34 34 H 1.08995 * 109.46907 * 300.00278 * 4 2 1 35 35 H 0.96997 * 120.00222 * 179.97438 * 8 7 5 36 36 H 1.08003 * 119.92765 * 0.02562 * 14 13 2 37 37 H 1.07992 * 120.07695 * 179.97438 * 15 14 13 38 38 H 1.09004 * 113.76870 * 90.35418 * 20 19 17 39 39 H 1.09000 * 113.87317 * 318.96868 * 20 19 17 40 40 H 1.08999 * 113.74551 * 90.74061 * 21 20 19 41 41 H 1.09008 * 109.47000 * 303.08086 * 22 21 20 42 42 H 1.09001 * 109.46785 * 63.07120 * 22 21 20 43 43 H 0.96701 * 113.99791 * 179.97438 * 23 22 21 44 44 H 1.09000 * 113.86578 * 41.07951 * 24 19 17 45 45 H 1.08993 * 113.76926 * 269.58829 * 24 19 17 46 46 H 1.08007 * 120.07339 * 179.72634 * 25 16 15 47 47 H 1.08000 * 119.92779 * 180.23074 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3807 7 6 1.8705 -0.4822 -3.7320 8 7 2.6258 -1.5521 -3.8526 9 14 1.2473 0.3979 -5.2572 10 1 0.4228 1.5650 -4.8531 11 1 2.4021 0.8644 -6.0660 12 1 0.4221 -0.5358 -6.0651 13 6 2.0324 -0.7104 1.2305 14 6 1.6962 -0.2350 2.4856 15 6 2.1532 -0.8802 3.6162 16 6 2.9559 -2.0152 3.4916 17 6 3.4497 -2.7114 4.6988 18 8 3.0420 -2.3870 5.7970 19 7 4.3520 -3.7057 4.5816 20 6 5.0819 -4.5583 5.5400 21 6 6.1376 -4.7202 4.4313 22 6 6.6705 -6.1477 4.2919 23 8 7.6905 -6.1798 3.2916 24 6 5.0090 -4.3806 3.4409 25 6 3.2951 -2.4868 2.2225 26 6 2.8276 -1.8350 1.1001 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9563 0.8900 33 1 3.1300 -0.7209 -1.2494 34 1 1.6768 -1.7489 -1.2491 35 1 2.8596 -1.8840 -4.7335 36 1 1.0746 0.6431 2.5805 37 1 1.8904 -0.5079 4.5953 38 1 4.5618 -5.4831 5.7899 39 1 5.4452 -4.0240 6.4179 40 1 6.9299 -3.9726 4.4671 41 1 7.0858 -6.4752 5.2451 42 1 5.8567 -6.8127 4.0026 43 1 8.0749 -7.0558 3.1498 44 1 5.3135 -3.7028 2.6434 45 1 4.4676 -5.2532 3.0757 46 1 3.9196 -3.3620 2.1194 47 1 3.0863 -2.2010 0.1175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148906020.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:54 Heat of formation + Delta-G solvation = -29.052408 kcal Electronic energy + Delta-G solvation = -26298.421219 eV Core-core repulsion = 22640.241692 eV Total energy + Delta-G solvation = -3658.179527 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.76978 -39.31773 -38.02349 -36.61367 -35.79561 -32.53343 -31.39894 -30.64228 -29.61077 -27.24138 -26.61515 -26.44225 -26.17308 -24.09835 -22.72305 -21.66762 -20.86697 -19.59788 -18.54995 -17.75181 -17.32454 -16.69392 -16.37933 -16.09156 -15.19539 -15.01490 -14.54191 -14.33005 -14.27703 -14.07527 -13.38841 -13.33810 -13.30039 -13.06167 -12.92566 -12.75557 -12.47899 -12.22592 -12.12575 -12.01400 -11.48154 -11.38164 -11.30108 -11.03770 -10.84466 -10.73264 -10.66775 -10.42831 -10.34547 -10.20086 -9.99984 -9.72052 -9.13836 -8.94164 -8.91707 -8.65993 -8.38527 -8.30390 -6.02917 -4.03278 1.14036 1.71715 2.59081 2.99286 3.28927 3.37298 3.40122 3.59632 4.07776 4.17516 4.34193 4.43550 4.63575 4.81999 4.86233 5.00578 5.04460 5.09717 5.17764 5.21622 5.26281 5.33031 5.33720 5.38896 5.54979 5.70562 5.79582 5.86002 5.93589 5.95385 6.02276 6.31923 6.35836 6.38195 6.56033 6.61455 6.64693 6.69803 6.84786 7.06165 7.07330 7.21628 7.23260 7.31420 7.50651 7.59750 7.72349 7.95845 8.13312 8.39484 9.01252 9.60119 11.08671 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014537 B = 0.003050 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.696124 B = 9178.246234 C =10845.168508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.034 4.034 3 C -0.123 4.123 4 C 0.033 3.967 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C -0.021 4.021 14 C -0.132 4.132 15 C -0.063 4.063 16 C -0.156 4.156 17 C 0.588 3.412 18 O -0.546 6.546 19 N -0.645 5.645 20 C 0.117 3.883 21 C -0.124 4.124 22 C 0.085 3.915 23 O -0.570 6.570 24 C 0.100 3.900 25 C -0.101 4.101 26 C -0.124 4.124 27 H 0.034 0.966 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.020 0.980 34 H 0.019 0.981 35 H 0.259 0.741 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.382 0.618 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.133 0.867 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.546 -8.464 16.077 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.034 4.034 3 C -0.181 4.181 4 C -0.004 4.004 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.021 4.021 14 C -0.150 4.150 15 C -0.082 4.082 16 C -0.159 4.159 17 C 0.381 3.619 18 O -0.424 6.424 19 N -0.381 5.381 20 C -0.005 4.005 21 C -0.143 4.143 22 C 0.007 3.993 23 O -0.376 6.376 24 C -0.022 4.022 25 C -0.119 4.119 26 C -0.141 4.141 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.129 0.871 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.229 0.771 44 H 0.117 0.883 45 H 0.110 0.890 46 H 0.151 0.849 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.097 -7.585 16.534 19.186 hybrid contribution -0.196 -0.313 -0.937 1.007 sum 5.901 -7.898 15.597 18.452 Atomic orbital electron populations 1.21758 0.94375 1.01208 1.00728 1.19795 0.95360 0.95294 0.92962 1.21759 1.00489 0.95082 1.00725 1.19239 0.96227 0.95203 0.89694 1.21275 1.31021 1.12077 0.90588 0.92187 1.24996 0.95291 0.95071 0.99058 1.69957 1.37156 1.23054 1.23332 0.86605 0.78639 0.79737 0.83443 1.19771 1.21124 1.21132 1.20594 0.92802 0.93501 0.95188 1.21024 1.01515 1.00750 0.91732 1.21111 0.94704 0.93398 0.98987 1.19612 1.04566 0.99442 0.92260 1.18121 0.76401 0.78329 0.89011 1.90737 1.57428 1.66074 1.28203 1.49833 1.43318 1.34532 1.10374 1.23060 0.89231 0.94056 0.94166 1.23204 0.96990 0.97731 0.96376 1.22098 0.90407 0.95649 0.91181 1.86512 1.55429 1.35908 1.59732 1.23626 0.90251 0.96648 0.91707 1.21892 0.98479 0.99898 0.91673 1.21476 0.97634 0.95635 0.99378 0.94651 0.91229 0.93430 0.93417 0.91228 0.94657 0.96207 0.96227 0.93120 0.85719 0.85512 0.89650 0.89631 0.87068 0.92988 0.92969 0.77117 0.88343 0.89020 0.84946 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 8.03 37.15 0.30 -1.97 16 2 C -0.03 -0.66 0.61 -155.66 -0.09 -0.76 16 3 C -0.12 -2.26 8.03 37.16 0.30 -1.96 16 4 C 0.03 0.79 2.70 -27.88 -0.08 0.72 16 5 C -0.51 -13.42 7.65 -34.44 -0.26 -13.68 16 6 H 0.06 1.53 5.68 -52.48 -0.30 1.23 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -25.74 13.29 55.43 0.74 -25.01 16 9 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 C -0.02 -0.37 4.77 -104.53 -0.50 -0.87 16 14 C -0.13 -2.11 8.69 -39.64 -0.34 -2.46 16 15 C -0.06 -1.00 9.59 -39.18 -0.38 -1.38 16 16 C -0.16 -2.48 5.87 -104.97 -0.62 -3.10 16 17 C 0.59 9.29 7.99 -12.33 -0.10 9.19 16 18 O -0.55 -10.13 17.11 5.32 0.09 -10.04 16 19 N -0.64 -7.83 3.61 -179.17 -0.65 -8.47 16 20 C 0.12 1.01 8.40 -2.97 -0.02 0.98 16 21 C -0.12 -0.95 4.19 -89.69 -0.38 -1.32 16 22 C 0.09 0.49 6.89 37.16 0.26 0.74 16 23 O -0.57 -4.08 13.66 -35.23 -0.48 -4.57 16 24 C 0.10 0.93 6.12 -2.77 -0.02 0.92 16 25 C -0.10 -1.55 9.13 -39.19 -0.36 -1.91 16 26 C -0.12 -2.17 8.96 -39.64 -0.36 -2.52 16 27 H 0.03 0.55 7.37 -51.93 -0.38 0.17 16 28 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 32 H 0.03 0.55 7.38 -51.93 -0.38 0.17 16 33 H 0.02 0.51 7.51 -51.93 -0.39 0.12 16 34 H 0.02 0.50 7.50 -51.93 -0.39 0.11 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.12 1.78 7.08 -52.48 -0.37 1.41 16 37 H 0.13 1.91 7.67 -52.49 -0.40 1.50 16 38 H 0.09 0.59 8.10 -51.93 -0.42 0.16 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.22 8.14 -51.92 -0.42 -0.20 16 42 H 0.05 0.25 7.88 -51.93 -0.41 -0.16 16 43 H 0.38 1.04 9.12 45.56 0.42 1.46 16 44 H 0.10 0.98 6.26 -51.93 -0.33 0.65 16 45 H 0.09 0.73 7.92 -51.93 -0.41 0.31 16 46 H 0.13 1.69 3.78 -52.48 -0.20 1.49 16 47 H 0.14 2.69 5.87 -52.49 -0.31 2.38 16 LS Contribution 372.97 15.07 5.62 5.62 Total: -1.00 -33.06 372.97 -8.65 -41.71 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.21 Total: 2.71 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -2.74 Total: -17.92 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.09 Total: -33.48 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.39 Total: -14.61 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.06 -8.65 -41.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148906020.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.661 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds