Wall clock time and date at job start Tue Mar 31 2020 11:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47198 * 2 1 4 4 C 1.53003 * 109.47621 * 239.99686 * 2 1 3 5 5 C 1.50704 * 109.46687 * 60.00044 * 4 2 1 6 6 H 1.08003 * 120.00468 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00051 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99689 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00255 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46794 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46624 * 120.00036 * 9 7 5 12 12 H 1.48501 * 109.47211 * 239.99912 * 9 7 5 13 13 C 1.50703 * 109.47367 * 119.99730 * 2 1 3 14 14 C 1.38357 * 119.85098 * 300.00458 * 13 2 1 15 15 C 1.37962 * 120.14792 * 180.02562 * 14 13 2 16 16 C 1.39577 * 119.84724 * 359.97438 * 15 14 13 17 17 C 1.47841 * 120.14246 * 179.97438 * 16 15 14 18 18 O 1.21554 * 120.00198 * 7.99896 * 17 16 15 19 19 N 1.34777 * 119.99977 * 188.00695 * 17 16 15 20 20 C 1.47585 * 134.49318 * 177.18842 * 19 17 16 21 21 C 1.53941 * 86.11692 * 204.65675 * 20 19 17 22 22 C 1.53005 * 113.74398 * 221.94124 * 21 20 19 23 23 O 1.42898 * 109.47472 * 183.07562 * 22 21 20 24 24 C 1.47931 * 134.50368 * 357.21194 * 19 17 16 25 25 C 1.39573 * 119.71289 * 0.24790 * 16 15 14 26 26 C 1.37958 * 119.85313 * 359.52181 * 25 16 15 27 27 H 1.09000 * 109.47520 * 300.00030 * 1 2 3 28 28 H 1.09002 * 109.47065 * 60.00718 * 1 2 3 29 29 H 1.09000 * 109.46805 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47167 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46703 * 300.00060 * 3 2 1 32 32 H 1.09000 * 109.46909 * 59.99596 * 3 2 1 33 33 H 1.08991 * 109.47528 * 179.97438 * 4 2 1 34 34 H 1.08995 * 109.46907 * 300.00278 * 4 2 1 35 35 H 0.96997 * 120.00222 * 179.97438 * 8 7 5 36 36 H 1.08003 * 119.92765 * 0.02562 * 14 13 2 37 37 H 1.07992 * 120.07695 * 179.97438 * 15 14 13 38 38 H 1.09004 * 113.76870 * 90.35418 * 20 19 17 39 39 H 1.09000 * 113.87317 * 318.96868 * 20 19 17 40 40 H 1.08999 * 113.74551 * 90.74061 * 21 20 19 41 41 H 1.09008 * 109.47000 * 303.08086 * 22 21 20 42 42 H 1.09001 * 109.46785 * 63.07120 * 22 21 20 43 43 H 0.96701 * 113.99791 * 179.97438 * 23 22 21 44 44 H 1.09000 * 113.86578 * 41.07951 * 24 19 17 45 45 H 1.08993 * 113.76926 * 269.58829 * 24 19 17 46 46 H 1.08007 * 120.07339 * 179.72634 * 25 16 15 47 47 H 1.08000 * 119.92779 * 180.23074 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3807 7 6 1.8705 -0.4822 -3.7320 8 7 2.6258 -1.5521 -3.8526 9 14 1.2473 0.3979 -5.2572 10 1 0.4228 1.5650 -4.8531 11 1 2.4021 0.8644 -6.0660 12 1 0.4221 -0.5358 -6.0651 13 6 2.0324 -0.7104 1.2305 14 6 1.6962 -0.2350 2.4856 15 6 2.1532 -0.8802 3.6162 16 6 2.9559 -2.0152 3.4916 17 6 3.4497 -2.7114 4.6988 18 8 3.0420 -2.3870 5.7970 19 7 4.3520 -3.7057 4.5816 20 6 5.0819 -4.5583 5.5400 21 6 6.1376 -4.7202 4.4313 22 6 6.6705 -6.1477 4.2919 23 8 7.6905 -6.1798 3.2916 24 6 5.0090 -4.3806 3.4409 25 6 3.2951 -2.4868 2.2225 26 6 2.8276 -1.8350 1.1001 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9563 0.8900 33 1 3.1300 -0.7209 -1.2494 34 1 1.6768 -1.7489 -1.2491 35 1 2.8596 -1.8840 -4.7335 36 1 1.0746 0.6431 2.5805 37 1 1.8904 -0.5079 4.5953 38 1 4.5618 -5.4831 5.7899 39 1 5.4452 -4.0240 6.4179 40 1 6.9299 -3.9726 4.4671 41 1 7.0858 -6.4752 5.2451 42 1 5.8567 -6.8127 4.0026 43 1 8.0749 -7.0558 3.1498 44 1 5.3135 -3.7028 2.6434 45 1 4.4676 -5.2532 3.0757 46 1 3.9196 -3.3620 2.1194 47 1 3.0863 -2.2010 0.1175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148906020.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:54 Heat of formation + Delta-G solvation = -50.393763 kcal Electronic energy + Delta-G solvation = -26299.346650 eV Core-core repulsion = 22640.241692 eV Total energy + Delta-G solvation = -3659.104958 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.77238 -40.54295 -39.12328 -37.30788 -37.19253 -34.50588 -32.54383 -31.88076 -30.76936 -29.05678 -27.93000 -27.42060 -27.00444 -25.73952 -24.10191 -23.03520 -21.71007 -20.56895 -20.07052 -18.57956 -18.28355 -18.13626 -17.59839 -17.10283 -16.65466 -16.10286 -15.98384 -15.70912 -15.42426 -15.11451 -14.93520 -14.59110 -14.44526 -14.27503 -13.89090 -13.81232 -13.68857 -13.59936 -13.53995 -13.23776 -12.96598 -12.73905 -12.66539 -12.33455 -12.32689 -12.22451 -12.04521 -11.86618 -11.69249 -11.66942 -11.03617 -10.87905 -10.81287 -10.68035 -10.50436 -9.97667 -9.91033 -9.58460 -8.12993 -6.19308 -0.14091 0.42857 1.41197 1.43239 1.54138 1.66640 1.77841 2.44858 2.85955 3.02942 3.21797 3.34133 3.51977 3.82921 3.88802 3.95525 4.00513 4.24849 4.27346 4.34112 4.38031 4.40222 4.45072 4.47615 4.52371 4.56341 4.57832 4.65224 4.74886 4.80441 4.95187 4.97623 5.02078 5.11691 5.13327 5.23453 5.29989 5.34558 5.38778 5.49051 5.51892 5.54935 5.80495 5.80704 5.91174 5.96849 6.35230 6.48143 6.95030 6.98470 6.98967 7.47885 8.99287 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014537 B = 0.003050 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.696124 B = 9178.246234 C =10845.168508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.030 4.030 3 C -0.119 4.119 4 C 0.045 3.955 5 C -0.518 4.518 6 H 0.067 0.933 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.952 3.048 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.284 1.284 13 C -0.035 4.035 14 C -0.124 4.124 15 C -0.065 4.065 16 C -0.161 4.161 17 C 0.582 3.418 18 O -0.582 6.582 19 N -0.648 5.648 20 C 0.116 3.884 21 C -0.111 4.111 22 C 0.088 3.912 23 O -0.596 6.596 24 C 0.091 3.909 25 C -0.092 4.092 26 C -0.141 4.141 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.068 0.932 33 H -0.009 1.009 34 H -0.009 1.009 35 H 0.259 0.741 36 H 0.148 0.852 37 H 0.137 0.863 38 H 0.110 0.890 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.400 0.600 44 H 0.090 0.910 45 H 0.112 0.888 46 H 0.155 0.845 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.341 -8.572 17.313 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.030 4.030 3 C -0.176 4.176 4 C 0.008 3.992 5 C -0.556 4.556 6 H 0.085 0.915 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.778 3.222 10 H -0.185 1.185 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.036 4.036 14 C -0.142 4.142 15 C -0.084 4.084 16 C -0.164 4.164 17 C 0.374 3.626 18 O -0.464 6.464 19 N -0.382 5.382 20 C -0.005 4.005 21 C -0.130 4.130 22 C 0.010 3.990 23 O -0.405 6.405 24 C -0.030 4.030 25 C -0.110 4.110 26 C -0.159 4.159 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.010 0.990 34 H 0.010 0.990 35 H 0.068 0.932 36 H 0.166 0.834 37 H 0.155 0.845 38 H 0.128 0.872 39 H 0.104 0.896 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.250 0.750 44 H 0.108 0.892 45 H 0.130 0.870 46 H 0.172 0.828 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.922 -7.727 17.762 20.255 hybrid contribution -0.036 -0.377 -1.278 1.333 sum 5.886 -8.103 16.485 19.289 Atomic orbital electron populations 1.21709 0.93323 1.00913 1.01710 1.19641 0.96178 0.95609 0.91562 1.21709 0.99878 0.94342 1.01708 1.19034 0.94292 0.94126 0.91718 1.21685 1.30363 1.12064 0.91446 0.91452 1.25847 0.95681 0.95857 1.02344 1.70093 1.38717 1.24712 1.23956 0.85579 0.78098 0.78860 0.79620 1.18479 1.20994 1.20977 1.20480 0.93851 0.93929 0.95313 1.21129 1.01287 1.01192 0.90585 1.21301 0.94373 0.93309 0.99392 1.19841 1.04356 0.99589 0.92609 1.18081 0.77028 0.79233 0.88244 1.90707 1.59124 1.67542 1.29058 1.50021 1.41729 1.33662 1.12790 1.23334 0.89000 0.94212 0.93942 1.23053 0.96003 0.99131 0.94841 1.22115 0.90804 0.94114 0.92007 1.86454 1.55950 1.37853 1.60229 1.23893 0.90965 0.96787 0.91344 1.22027 0.97983 1.00182 0.90764 1.21368 0.98918 0.96550 0.99086 0.91355 0.92446 0.94388 0.94394 0.92449 0.91354 0.99034 0.99025 0.93172 0.83416 0.84512 0.87176 0.89626 0.88067 0.90948 0.91449 0.74985 0.89230 0.87011 0.82778 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.27 8.03 71.98 0.58 -3.70 16 2 C -0.03 -1.16 0.61 -52.93 -0.03 -1.20 16 3 C -0.12 -4.27 8.03 71.98 0.58 -3.69 16 4 C 0.05 2.25 2.70 29.85 0.08 2.33 16 5 C -0.52 -27.66 7.65 25.60 0.20 -27.46 16 6 H 0.07 3.44 5.68 -2.91 -0.02 3.42 16 7 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 8 N -0.93 -55.33 13.29 21.45 0.28 -55.04 16 9 Si 0.95 43.42 29.54 68.60 2.03 45.45 16 10 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 C -0.04 -1.26 4.77 -19.81 -0.09 -1.35 16 14 C -0.12 -3.77 8.69 22.23 0.19 -3.58 16 15 C -0.06 -1.98 9.59 22.53 0.22 -1.76 16 16 C -0.16 -5.03 5.87 -20.09 -0.12 -5.14 16 17 C 0.58 17.94 7.99 86.79 0.69 18.63 16 18 O -0.58 -21.33 17.11 -3.88 -0.07 -21.40 16 19 N -0.65 -14.88 3.61 -839.06 -3.03 -17.92 16 20 C 0.12 1.75 8.40 86.48 0.73 2.48 16 21 C -0.11 -1.48 4.19 -10.13 -0.04 -1.53 16 22 C 0.09 0.76 6.89 71.98 0.50 1.25 16 23 O -0.60 -7.31 13.66 -148.98 -2.04 -9.34 16 24 C 0.09 1.57 6.12 86.42 0.53 2.10 16 25 C -0.09 -2.80 9.13 22.53 0.21 -2.60 16 26 C -0.14 -5.11 8.96 22.23 0.20 -4.91 16 27 H 0.07 1.98 7.37 -2.39 -0.02 1.96 16 28 H 0.06 2.17 6.62 -2.39 -0.02 2.15 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 2.17 6.62 -2.38 -0.02 2.15 16 32 H 0.07 1.98 7.38 -2.39 -0.02 1.96 16 33 H -0.01 -0.47 7.51 -2.39 -0.02 -0.49 16 34 H -0.01 -0.47 7.50 -2.39 -0.02 -0.49 16 35 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.15 3.74 7.08 -2.91 -0.02 3.72 16 37 H 0.14 3.91 7.67 -2.91 -0.02 3.88 16 38 H 0.11 1.16 8.10 -2.38 -0.02 1.14 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 42 H 0.07 0.40 7.88 -2.39 -0.02 0.38 16 43 H 0.40 1.34 9.12 -74.06 -0.68 0.66 16 44 H 0.09 1.71 6.26 -2.39 -0.01 1.70 16 45 H 0.11 1.51 7.92 -2.39 -0.02 1.49 16 46 H 0.16 3.89 3.78 -2.91 -0.01 3.88 16 47 H 0.12 4.85 5.87 -2.91 -0.02 4.83 16 Total: -1.00 -72.92 372.97 2.36 -70.56 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.32 Total: 17.38 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 4.87 Total: -29.68 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -2.75 Total: -72.96 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -2.10 Total: -30.74 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -72.92 2.36 -70.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148906020.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.167 kcal (2) G-P(sol) polarization free energy of solvation -72.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds