Wall clock time and date at job start Tue Mar 31 2020 11:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34783 * 120.00164 * 2 1 4 4 O 1.21545 * 120.00098 * 185.08687 * 3 2 1 5 5 C 1.47848 * 119.99474 * 5.08984 * 3 2 1 6 6 C 1.39575 * 120.14422 * 320.62455 * 5 3 2 7 7 C 1.37959 * 119.85012 * 179.79124 * 6 5 3 8 8 C 1.38357 * 120.14539 * 0.49471 * 7 6 5 9 9 C 1.50700 * 119.85603 * 179.72137 * 8 7 6 10 10 C 1.53001 * 109.47491 * 120.01833 * 9 8 7 11 11 C 1.52995 * 109.47346 * 240.01970 * 9 8 7 12 12 C 1.52999 * 109.46887 * 0.02562 * 9 8 7 13 13 C 1.50700 * 109.47266 * 180.02562 * 12 9 8 14 14 H 1.08005 * 120.00177 * 0.02562 * 13 12 9 15 15 C 1.37874 * 120.00492 * 180.02562 * 13 12 9 16 16 N 1.31519 * 119.99680 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00420 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46810 * 60.00073 * 17 15 13 19 19 H 1.48502 * 109.47267 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47318 * 300.00290 * 17 15 13 21 21 C 1.38359 * 120.29332 * 359.73498 * 8 7 6 22 22 C 1.37958 * 120.14552 * 0.02759 * 21 8 7 23 23 C 1.46498 * 120.00109 * 180.27403 * 2 1 3 24 24 C 1.54035 * 113.81414 * 34.34140 * 23 2 1 25 25 O 1.44446 * 85.42623 * 223.23341 * 24 23 2 26 26 C 1.44179 * 93.37841 * 24.08621 * 25 24 23 27 27 H 1.09001 * 109.47094 * 205.57392 * 1 2 3 28 28 H 1.09000 * 109.47671 * 325.57220 * 1 2 3 29 29 H 1.09003 * 109.47187 * 85.57585 * 1 2 3 30 30 H 1.08003 * 120.07631 * 0.02562 * 6 5 3 31 31 H 1.08002 * 119.92543 * 180.23277 * 7 6 5 32 32 H 1.08994 * 109.46884 * 59.99564 * 10 9 8 33 33 H 1.09001 * 109.47188 * 180.02562 * 10 9 8 34 34 H 1.09009 * 109.46579 * 300.00090 * 10 9 8 35 35 H 1.09008 * 109.47248 * 59.99115 * 11 9 8 36 36 H 1.08992 * 109.47930 * 179.97438 * 11 9 8 37 37 H 1.09004 * 109.47186 * 300.00240 * 11 9 8 38 38 H 1.08996 * 109.47263 * 300.00244 * 12 9 8 39 39 H 1.09003 * 109.46979 * 60.00577 * 12 9 8 40 40 H 0.96999 * 120.00022 * 179.97438 * 16 15 13 41 41 H 1.07996 * 119.93030 * 180.02562 * 21 8 7 42 42 H 1.07996 * 120.07936 * 179.97438 * 22 21 8 43 43 H 1.09004 * 113.00168 * 166.16324 * 23 2 1 44 44 H 1.09000 * 113.86623 * 337.33850 * 24 23 2 45 45 H 1.09002 * 113.86813 * 109.05127 * 24 23 2 46 46 H 1.08998 * 113.86987 * 221.76454 * 26 25 24 47 47 H 1.09007 * 113.98067 * 90.07254 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3507 1.1693 -0.0933 5 6 1.4039 2.4451 0.1136 6 6 0.1903 2.6173 -0.5539 7 6 -0.4926 3.8107 -0.4402 8 6 0.0282 4.8390 0.3251 9 6 -0.7201 6.1421 0.4397 10 6 -1.0619 6.4066 1.9074 11 6 0.1524 7.2799 -0.0938 12 6 -2.0108 6.0625 -0.3780 13 6 -2.7589 7.3658 -0.2639 14 1 -2.3540 8.1705 0.3319 15 6 -3.9602 7.5309 -0.9201 16 7 -4.4535 6.5508 -1.6452 17 14 -4.8878 9.1461 -0.7781 18 1 -4.0410 10.2503 -1.2967 19 1 -6.1411 9.0685 -1.5709 20 1 -5.2189 9.4033 0.6465 21 6 1.2331 4.6764 0.9855 22 6 1.9237 3.4864 0.8841 23 6 2.1974 -1.2687 -0.0061 24 6 1.5008 -2.3853 -0.8064 25 8 1.8538 -3.2413 0.3023 26 6 1.9358 -2.1441 1.2340 27 1 -0.3633 -0.9270 0.4436 28 1 -0.3634 0.8476 0.5810 29 1 -0.3634 0.0793 -1.0246 30 1 -0.2152 1.8169 -1.1549 31 1 -1.4336 3.9440 -0.9531 32 1 -0.1425 6.4632 2.4900 33 1 -1.6035 7.3489 1.9902 34 1 -1.6836 5.5959 2.2875 35 1 0.3960 7.0915 -1.1394 36 1 -0.3889 8.2224 -0.0113 37 1 1.0720 7.3365 0.4888 38 1 -1.7675 5.8740 -1.4236 39 1 -2.6325 5.2519 0.0023 40 1 -5.2988 6.6668 -2.1065 41 1 1.6340 5.4828 1.5816 42 1 2.8643 3.3608 1.3996 43 1 3.2541 -1.1493 -0.2455 44 1 0.4273 -2.2384 -0.9257 45 1 2.0044 -2.6394 -1.7391 46 1 2.7835 -2.2071 1.9162 47 1 0.9964 -1.9217 1.7404 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148906479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:02 Heat of formation + Delta-G solvation = -20.302698 kcal Electronic energy + Delta-G solvation = -26573.340142 eV Core-core repulsion = 22915.540030 eV Total energy + Delta-G solvation = -3657.800111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.25418 -39.94852 -38.68140 -35.94739 -35.40250 -32.53411 -30.97982 -30.40777 -28.74821 -27.36473 -27.16617 -26.84749 -26.47935 -24.31516 -23.21097 -21.74046 -21.04645 -19.69546 -18.58747 -17.71203 -17.31933 -16.60223 -16.42825 -16.25449 -15.36892 -15.28005 -14.99460 -14.48857 -14.26672 -13.98580 -13.46669 -13.41030 -13.29620 -13.05446 -12.98918 -12.86990 -12.52130 -12.32227 -12.11671 -12.02416 -11.85173 -11.78751 -11.40158 -11.04077 -11.01152 -10.82880 -10.68408 -10.50292 -10.25958 -10.09231 -10.03356 -9.84944 -9.17688 -9.01967 -8.96855 -8.69804 -8.41699 -8.35797 -6.05522 -4.06116 1.14414 1.63720 2.59799 2.74443 3.23757 3.29110 3.34418 3.36265 3.91022 4.02610 4.38632 4.41202 4.62593 4.69238 4.76738 4.87790 4.98913 5.12612 5.15465 5.24000 5.27375 5.31040 5.42727 5.47744 5.59646 5.64147 5.64817 5.71463 5.87108 5.91303 5.91521 6.12963 6.25408 6.30715 6.32055 6.48841 6.53143 6.61075 6.64025 6.80233 7.02495 7.03167 7.06897 7.16362 7.25628 7.55740 7.68691 7.92840 7.96200 8.36409 8.97931 9.57376 11.05976 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022608 B = 0.002731 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.215149 B =10250.155834 C =11054.465575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.609 5.609 3 C 0.569 3.431 4 O -0.538 6.538 5 C -0.157 4.157 6 C -0.095 4.095 7 C -0.121 4.121 8 C -0.022 4.022 9 C -0.034 4.034 10 C -0.123 4.123 11 C -0.124 4.124 12 C 0.034 3.966 13 C -0.513 4.513 14 H 0.059 0.941 15 C 0.058 3.942 16 N -0.896 5.896 17 Si 0.888 3.112 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.129 4.129 22 C -0.068 4.068 23 C 0.081 3.919 24 C 0.026 3.974 25 O -0.375 6.375 26 C 0.023 3.977 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.129 0.871 31 H 0.144 0.856 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.034 0.966 38 H 0.019 0.981 39 H 0.020 0.980 40 H 0.260 0.740 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.131 0.869 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.853 -13.718 4.500 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.344 5.344 3 C 0.360 3.640 4 O -0.415 6.415 5 C -0.160 4.160 6 C -0.113 4.113 7 C -0.139 4.139 8 C -0.023 4.023 9 C -0.034 4.034 10 C -0.180 4.180 11 C -0.181 4.181 12 C -0.003 4.003 13 C -0.551 4.551 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.535 5.535 17 Si 0.716 3.284 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.147 4.147 22 C -0.086 4.086 23 C -0.024 4.024 24 C -0.052 4.052 25 O -0.293 6.293 26 C -0.055 4.055 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.146 0.854 31 H 0.162 0.838 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.148 0.852 44 H 0.107 0.893 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.386 -14.062 4.363 18.018 hybrid contribution -0.752 0.985 -0.078 1.241 sum 9.635 -13.078 4.285 16.799 Atomic orbital electron populations 1.22249 0.78918 1.03990 1.02502 1.47850 1.07241 1.05259 1.74000 1.18637 0.86896 0.83668 0.74809 1.90747 1.13992 1.87361 1.49436 1.19591 0.97258 0.94314 1.04849 1.21565 0.93168 0.98252 0.98308 1.21470 1.01183 0.92127 0.99133 1.20572 0.93260 0.96107 0.92323 1.19791 0.96959 0.89555 0.97095 1.21757 0.99537 1.02575 0.94157 1.21761 0.97459 0.99057 0.99825 1.19227 0.89378 0.97369 0.94299 1.21195 1.04871 0.99474 1.29606 0.92303 1.24985 0.97563 0.96380 0.95409 1.69934 1.19969 1.31754 1.31879 0.86723 0.79273 0.84310 0.78087 1.20298 1.21390 1.20304 1.21006 0.95544 0.97083 1.01079 1.21013 0.98642 0.91985 0.97002 1.24618 0.99754 0.82422 0.95579 1.24565 1.00731 0.87231 0.92660 1.89764 1.90331 1.28314 1.20897 1.24525 1.02575 0.84218 0.94166 0.90977 0.89225 0.91653 0.85377 0.83817 0.94685 0.91243 0.93434 0.93405 0.91231 0.94661 0.96240 0.96223 0.92988 0.85742 0.85956 0.85170 0.89300 0.88334 0.88482 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 7.58 59.84 0.45 0.98 16 2 N -0.61 -6.40 3.09 -182.63 -0.56 -6.96 16 3 C 0.57 7.87 7.35 -12.33 -0.09 7.78 16 4 O -0.54 -9.03 16.41 5.33 0.09 -8.94 16 5 C -0.16 -2.21 5.24 -104.97 -0.55 -2.76 16 6 C -0.09 -1.29 7.56 -39.19 -0.30 -1.59 16 7 C -0.12 -1.97 8.96 -39.64 -0.36 -2.32 16 8 C -0.02 -0.37 4.77 -104.53 -0.50 -0.87 16 9 C -0.03 -0.63 0.61 -155.66 -0.09 -0.73 16 10 C -0.12 -2.15 8.03 37.16 0.30 -1.85 16 11 C -0.12 -2.21 8.03 37.15 0.30 -1.91 16 12 C 0.03 0.79 2.70 -27.88 -0.08 0.71 16 13 C -0.51 -13.19 7.65 -34.44 -0.26 -13.46 16 14 H 0.06 1.47 5.68 -52.48 -0.30 1.17 16 15 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -25.36 13.29 55.43 0.74 -24.63 16 17 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 C -0.13 -1.91 8.69 -39.64 -0.34 -2.25 16 22 C -0.07 -0.96 9.63 -39.18 -0.38 -1.34 16 23 C 0.08 0.76 4.44 -66.85 -0.30 0.46 16 24 C 0.03 0.20 8.60 37.64 0.32 0.53 16 25 O -0.38 -3.75 12.46 -35.23 -0.44 -4.19 16 26 C 0.02 0.19 8.72 37.64 0.33 0.52 16 27 H 0.07 0.45 6.24 -51.93 -0.32 0.12 16 28 H 0.09 0.81 5.80 -51.93 -0.30 0.50 16 29 H 0.07 0.46 6.91 -51.93 -0.36 0.10 16 30 H 0.13 1.43 5.31 -52.48 -0.28 1.15 16 31 H 0.14 2.54 5.87 -52.49 -0.31 2.23 16 32 H 0.03 0.52 7.37 -51.93 -0.38 0.13 16 33 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 34 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 35 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 36 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 37 H 0.03 0.53 7.38 -51.93 -0.38 0.15 16 38 H 0.02 0.49 7.50 -51.93 -0.39 0.10 16 39 H 0.02 0.48 7.51 -51.93 -0.39 0.09 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.12 1.65 7.08 -52.49 -0.37 1.28 16 42 H 0.12 1.62 8.05 -52.49 -0.42 1.20 16 43 H 0.13 1.38 7.25 -51.93 -0.38 1.01 16 44 H 0.09 0.58 6.51 -51.93 -0.34 0.24 16 45 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.09 0.63 7.22 -51.92 -0.37 0.26 16 LS Contribution 365.93 15.07 5.51 5.51 Total: -1.00 -30.54 365.93 -8.13 -38.68 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.81 Total: 1.49 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -1.64 Total: -16.63 kcal Atomic # 7 Polarization: -31.76 SS G_CDS: 0.17 Total: -31.59 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.35 Total: -13.13 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.54 -8.13 -38.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148906479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.373 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds