Wall clock time and date at job start Tue Mar 31 2020 11:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34783 * 120.00164 * 2 1 4 4 O 1.21545 * 120.00098 * 185.08687 * 3 2 1 5 5 C 1.47848 * 119.99474 * 5.08984 * 3 2 1 6 6 C 1.39575 * 120.14422 * 320.62455 * 5 3 2 7 7 C 1.37959 * 119.85012 * 179.79124 * 6 5 3 8 8 C 1.38357 * 120.14539 * 0.49471 * 7 6 5 9 9 C 1.50700 * 119.85603 * 179.72137 * 8 7 6 10 10 C 1.53001 * 109.47491 * 120.01833 * 9 8 7 11 11 C 1.52995 * 109.47346 * 240.01970 * 9 8 7 12 12 C 1.52999 * 109.46887 * 0.02562 * 9 8 7 13 13 C 1.50700 * 109.47266 * 180.02562 * 12 9 8 14 14 H 1.08005 * 120.00177 * 0.02562 * 13 12 9 15 15 C 1.37874 * 120.00492 * 180.02562 * 13 12 9 16 16 N 1.31519 * 119.99680 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00420 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46810 * 60.00073 * 17 15 13 19 19 H 1.48502 * 109.47267 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47318 * 300.00290 * 17 15 13 21 21 C 1.38359 * 120.29332 * 359.73498 * 8 7 6 22 22 C 1.37958 * 120.14552 * 0.02759 * 21 8 7 23 23 C 1.46498 * 120.00109 * 180.27403 * 2 1 3 24 24 C 1.54035 * 113.81414 * 34.34140 * 23 2 1 25 25 O 1.44446 * 85.42623 * 223.23341 * 24 23 2 26 26 C 1.44179 * 93.37841 * 24.08621 * 25 24 23 27 27 H 1.09001 * 109.47094 * 205.57392 * 1 2 3 28 28 H 1.09000 * 109.47671 * 325.57220 * 1 2 3 29 29 H 1.09003 * 109.47187 * 85.57585 * 1 2 3 30 30 H 1.08003 * 120.07631 * 0.02562 * 6 5 3 31 31 H 1.08002 * 119.92543 * 180.23277 * 7 6 5 32 32 H 1.08994 * 109.46884 * 59.99564 * 10 9 8 33 33 H 1.09001 * 109.47188 * 180.02562 * 10 9 8 34 34 H 1.09009 * 109.46579 * 300.00090 * 10 9 8 35 35 H 1.09008 * 109.47248 * 59.99115 * 11 9 8 36 36 H 1.08992 * 109.47930 * 179.97438 * 11 9 8 37 37 H 1.09004 * 109.47186 * 300.00240 * 11 9 8 38 38 H 1.08996 * 109.47263 * 300.00244 * 12 9 8 39 39 H 1.09003 * 109.46979 * 60.00577 * 12 9 8 40 40 H 0.96999 * 120.00022 * 179.97438 * 16 15 13 41 41 H 1.07996 * 119.93030 * 180.02562 * 21 8 7 42 42 H 1.07996 * 120.07936 * 179.97438 * 22 21 8 43 43 H 1.09004 * 113.00168 * 166.16324 * 23 2 1 44 44 H 1.09000 * 113.86623 * 337.33850 * 24 23 2 45 45 H 1.09002 * 113.86813 * 109.05127 * 24 23 2 46 46 H 1.08998 * 113.86987 * 221.76454 * 26 25 24 47 47 H 1.09007 * 113.98067 * 90.07254 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3507 1.1693 -0.0933 5 6 1.4039 2.4451 0.1136 6 6 0.1903 2.6173 -0.5539 7 6 -0.4926 3.8107 -0.4402 8 6 0.0282 4.8390 0.3251 9 6 -0.7201 6.1421 0.4397 10 6 -1.0619 6.4066 1.9074 11 6 0.1524 7.2799 -0.0938 12 6 -2.0108 6.0625 -0.3780 13 6 -2.7589 7.3658 -0.2639 14 1 -2.3540 8.1705 0.3319 15 6 -3.9602 7.5309 -0.9201 16 7 -4.4535 6.5508 -1.6452 17 14 -4.8878 9.1461 -0.7781 18 1 -4.0410 10.2503 -1.2967 19 1 -6.1411 9.0685 -1.5709 20 1 -5.2189 9.4033 0.6465 21 6 1.2331 4.6764 0.9855 22 6 1.9237 3.4864 0.8841 23 6 2.1974 -1.2687 -0.0061 24 6 1.5008 -2.3853 -0.8064 25 8 1.8538 -3.2413 0.3023 26 6 1.9358 -2.1441 1.2340 27 1 -0.3633 -0.9270 0.4436 28 1 -0.3634 0.8476 0.5810 29 1 -0.3634 0.0793 -1.0246 30 1 -0.2152 1.8169 -1.1549 31 1 -1.4336 3.9440 -0.9531 32 1 -0.1425 6.4632 2.4900 33 1 -1.6035 7.3489 1.9902 34 1 -1.6836 5.5959 2.2875 35 1 0.3960 7.0915 -1.1394 36 1 -0.3889 8.2224 -0.0113 37 1 1.0720 7.3365 0.4888 38 1 -1.7675 5.8740 -1.4236 39 1 -2.6325 5.2519 0.0023 40 1 -5.2988 6.6668 -2.1065 41 1 1.6340 5.4828 1.5816 42 1 2.8643 3.3608 1.3996 43 1 3.2541 -1.1493 -0.2455 44 1 0.4273 -2.2384 -0.9257 45 1 2.0044 -2.6394 -1.7391 46 1 2.7835 -2.2071 1.9162 47 1 0.9964 -1.9217 1.7404 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148906479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:01 Heat of formation + Delta-G solvation = -37.816516 kcal Electronic energy + Delta-G solvation = -26574.099598 eV Core-core repulsion = 22915.540030 eV Total energy + Delta-G solvation = -3658.559567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.08502 -40.99429 -39.84922 -37.34188 -36.35611 -34.47016 -32.15642 -31.57758 -29.71872 -28.90205 -28.13528 -27.90789 -27.50753 -25.82694 -24.57247 -23.05490 -22.03347 -20.51751 -20.04396 -18.69824 -18.39313 -18.07216 -17.30011 -17.13338 -16.67171 -16.50075 -16.16063 -15.88743 -15.48130 -15.21535 -14.95513 -14.62121 -14.27285 -14.10136 -13.91903 -13.86327 -13.84575 -13.62815 -13.58672 -13.16907 -12.90186 -12.71283 -12.69724 -12.55877 -12.46225 -12.29262 -12.26511 -11.99244 -11.91514 -11.63704 -11.04190 -10.84670 -10.78144 -10.72772 -10.47781 -9.92399 -9.80481 -9.57345 -8.11944 -6.17955 -0.01832 0.47185 1.43774 1.44450 1.51580 1.58569 1.81228 2.45651 2.56666 2.82396 3.22871 3.23536 3.43890 3.86972 3.90198 3.96179 4.01971 4.02484 4.16327 4.28703 4.33091 4.42792 4.47680 4.54103 4.57078 4.60193 4.61221 4.78699 4.80138 4.94750 4.96789 4.97242 5.00920 5.03953 5.13803 5.15992 5.29377 5.33726 5.39462 5.43016 5.51361 5.54318 5.56997 5.83298 5.85349 5.93010 6.00182 6.14103 6.37033 6.94329 6.96246 7.49131 8.99799 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022608 B = 0.002731 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.215149 B =10250.155834 C =11054.465575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.599 5.599 3 C 0.567 3.433 4 O -0.574 6.574 5 C -0.157 4.157 6 C -0.080 4.080 7 C -0.139 4.139 8 C -0.038 4.038 9 C -0.030 4.030 10 C -0.119 4.119 11 C -0.120 4.120 12 C 0.046 3.954 13 C -0.519 4.519 14 H 0.066 0.934 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.950 3.050 18 H -0.270 1.270 19 H -0.290 1.290 20 H -0.269 1.269 21 C -0.123 4.123 22 C -0.068 4.068 23 C 0.072 3.928 24 C 0.033 3.967 25 O -0.395 6.395 26 C 0.028 3.972 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.152 0.848 31 H 0.119 0.881 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.039 0.961 35 H 0.035 0.965 36 H 0.055 0.945 37 H 0.067 0.933 38 H -0.010 1.010 39 H -0.005 1.005 40 H 0.259 0.741 41 H 0.145 0.855 42 H 0.135 0.865 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.102 0.898 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.525 -14.127 5.574 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.331 5.331 3 C 0.358 3.642 4 O -0.454 6.454 5 C -0.160 4.160 6 C -0.098 4.098 7 C -0.157 4.157 8 C -0.039 4.039 9 C -0.030 4.030 10 C -0.176 4.176 11 C -0.178 4.178 12 C 0.009 3.991 13 C -0.557 4.557 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.776 3.224 18 H -0.196 1.196 19 H -0.215 1.215 20 H -0.194 1.194 21 C -0.141 4.141 22 C -0.087 4.087 23 C -0.032 4.032 24 C -0.044 4.044 25 O -0.314 6.314 26 C -0.049 4.049 27 H 0.115 0.885 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.170 0.830 31 H 0.137 0.863 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.008 0.992 39 H 0.013 0.987 40 H 0.068 0.932 41 H 0.163 0.837 42 H 0.153 0.847 43 H 0.132 0.868 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.120 0.880 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.040 -14.487 5.450 19.012 hybrid contribution -0.943 1.006 -0.422 1.442 sum 10.097 -13.482 5.028 17.578 Atomic orbital electron populations 1.22455 0.77271 1.05064 1.03583 1.47882 1.08216 1.04716 1.72312 1.18598 0.86439 0.84364 0.74835 1.90733 1.15343 1.87868 1.51500 1.19749 0.97106 0.94746 1.04437 1.21674 0.92653 0.97738 0.97771 1.21336 1.00896 0.93502 0.99966 1.20419 0.94295 0.95267 0.93877 1.19623 0.95016 0.91312 0.97016 1.21701 1.00823 1.01399 0.93646 1.21716 0.98484 0.97834 0.99717 1.19026 0.91322 0.95436 0.93312 1.21637 1.04877 1.00481 1.28735 0.91580 1.25815 0.98806 0.99566 0.95402 1.70071 1.20412 1.33772 1.33170 0.85726 0.77847 0.80501 0.78334 1.19550 1.21548 1.19365 1.21085 0.94467 0.97848 1.00681 1.21214 0.98954 0.91741 0.96772 1.24734 0.99139 0.82173 0.97176 1.24696 1.01734 0.85543 0.92453 1.89754 1.90605 1.29182 1.21827 1.24603 1.03542 0.83061 0.93728 0.88459 0.90013 0.90201 0.83015 0.86297 0.91397 0.92716 0.94138 0.94548 0.92617 0.91412 0.99152 0.98714 0.93182 0.83742 0.84696 0.86803 0.87461 0.87377 0.87974 0.88185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.78 7.58 127.77 0.97 1.75 16 2 N -0.60 -11.43 3.09 -861.04 -2.66 -14.10 16 3 C 0.57 14.94 7.35 86.79 0.64 15.58 16 4 O -0.57 -18.87 16.41 -3.86 -0.06 -18.94 16 5 C -0.16 -4.21 5.24 -20.09 -0.11 -4.32 16 6 C -0.08 -2.12 7.56 22.53 0.17 -1.95 16 7 C -0.14 -4.57 8.96 22.23 0.20 -4.37 16 8 C -0.04 -1.26 4.77 -19.81 -0.09 -1.36 16 9 C -0.03 -1.10 0.61 -52.93 -0.03 -1.13 16 10 C -0.12 -4.02 8.03 71.98 0.58 -3.44 16 11 C -0.12 -4.19 8.03 71.98 0.58 -3.61 16 12 C 0.05 2.21 2.70 29.85 0.08 2.29 16 13 C -0.52 -27.19 7.65 25.60 0.20 -26.99 16 14 H 0.07 3.30 5.68 -2.91 -0.02 3.28 16 15 C 0.00 0.08 5.46 84.65 0.46 0.54 16 16 N -0.93 -54.42 13.29 21.45 0.28 -54.14 16 17 Si 0.95 42.76 29.54 68.60 2.03 44.78 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 C -0.12 -3.39 8.69 22.23 0.19 -3.19 16 22 C -0.07 -1.81 9.63 22.53 0.22 -1.60 16 23 C 0.07 1.23 4.44 45.69 0.20 1.43 16 24 C 0.03 0.44 8.60 72.30 0.62 1.06 16 25 O -0.40 -7.12 12.46 -148.98 -1.86 -8.97 16 26 C 0.03 0.42 8.72 72.29 0.63 1.05 16 27 H 0.10 0.87 6.24 -2.39 -0.01 0.85 16 28 H 0.08 1.30 5.80 -2.39 -0.01 1.29 16 29 H 0.08 0.90 6.91 -2.39 -0.02 0.88 16 30 H 0.15 3.16 5.31 -2.91 -0.02 3.14 16 31 H 0.12 4.48 5.87 -2.91 -0.02 4.46 16 32 H 0.07 1.84 7.37 -2.39 -0.02 1.82 16 33 H 0.05 1.99 6.62 -2.39 -0.02 1.97 16 34 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.05 2.06 6.62 -2.39 -0.02 2.05 16 37 H 0.07 1.90 7.38 -2.38 -0.02 1.88 16 38 H -0.01 -0.52 7.50 -2.39 -0.02 -0.54 16 39 H -0.01 -0.29 7.51 -2.39 -0.02 -0.30 16 40 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 41 H 0.14 3.35 7.08 -2.91 -0.02 3.32 16 42 H 0.14 3.27 8.05 -2.91 -0.02 3.25 16 43 H 0.11 2.37 7.25 -2.38 -0.02 2.35 16 44 H 0.11 1.05 6.51 -2.39 -0.02 1.03 16 45 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.10 1.19 7.22 -2.38 -0.02 1.17 16 Total: -1.00 -67.29 365.93 4.21 -63.08 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.98 Total: 16.54 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 5.50 Total: -28.26 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: -2.38 Total: -68.23 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -1.92 Total: -27.91 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -67.29 4.21 -63.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148906479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.259 kcal (2) G-P(sol) polarization free energy of solvation -67.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds