Wall clock time and date at job start Tue Mar 31 2020 11:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50705 * 119.99902 * 2 1 4 4 H 1.08998 * 109.47264 * 4.99564 * 3 2 1 5 5 C 1.52997 * 109.47160 * 124.99759 * 3 2 1 6 6 O 1.42898 * 109.47319 * 54.99806 * 5 3 2 7 7 N 1.46504 * 109.46559 * 244.99716 * 3 2 1 8 8 C 1.34773 * 119.99858 * 155.00377 * 7 3 2 9 9 O 1.21552 * 120.00150 * 359.97438 * 8 7 3 10 10 C 1.47847 * 119.99905 * 179.97438 * 8 7 3 11 11 C 1.39576 * 120.14633 * 359.71957 * 10 8 7 12 12 C 1.37953 * 119.85220 * 179.74789 * 11 10 8 13 13 C 1.38357 * 120.14774 * 0.53152 * 12 11 10 14 14 C 1.50694 * 119.85690 * 179.72319 * 13 12 11 15 15 C 1.53001 * 109.47553 * 120.02127 * 14 13 12 16 16 C 1.53009 * 109.47022 * 240.02223 * 14 13 12 17 17 C 1.53003 * 109.47029 * 0.02562 * 14 13 12 18 18 C 1.50704 * 109.47057 * 180.02562 * 17 14 13 19 19 H 1.08000 * 120.00302 * 0.02562 * 18 17 14 20 20 C 1.37873 * 119.99857 * 179.97438 * 18 17 14 21 21 N 1.31518 * 120.00149 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99888 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47003 * 60.00119 * 22 20 18 24 24 H 1.48507 * 109.47109 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47136 * 299.99922 * 22 20 18 26 26 C 1.38359 * 120.29091 * 359.74293 * 13 12 11 27 27 C 1.37960 * 120.14800 * 359.97438 * 26 13 12 28 28 H 1.07998 * 120.00374 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99851 * 0.02562 * 1 2 3 30 30 H 1.07995 * 119.99630 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47153 * 294.99499 * 5 3 2 32 32 H 1.09001 * 109.46832 * 174.99689 * 5 3 2 33 33 H 0.96701 * 113.99881 * 180.02562 * 6 5 3 34 34 H 0.97000 * 119.99822 * 334.99336 * 7 3 2 35 35 H 1.08001 * 120.07150 * 0.02562 * 11 10 8 36 36 H 1.07998 * 119.92865 * 180.27484 * 12 11 10 37 37 H 1.09000 * 109.47050 * 59.99629 * 15 14 13 38 38 H 1.09000 * 109.47302 * 179.97438 * 15 14 13 39 39 H 1.09002 * 109.46865 * 300.00308 * 15 14 13 40 40 H 1.09002 * 109.46789 * 60.00013 * 16 14 13 41 41 H 1.08999 * 109.46801 * 179.97438 * 16 14 13 42 42 H 1.08996 * 109.47075 * 299.99471 * 16 14 13 43 43 H 1.09001 * 109.47217 * 300.00232 * 17 14 13 44 44 H 1.08999 * 109.47090 * 60.00485 * 17 14 13 45 45 H 0.97002 * 119.99736 * 179.97438 * 21 20 18 46 46 H 1.07997 * 119.93086 * 179.97438 * 26 13 12 47 47 H 1.07997 * 120.08006 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3586 2.1317 0.0895 5 6 3.0350 1.3332 1.1816 6 8 3.8841 0.1851 1.1276 7 7 2.8132 1.4361 -1.2519 8 6 3.1406 2.6580 -1.7166 9 8 2.8134 3.6515 -1.0974 10 6 3.8977 2.7901 -2.9796 11 6 4.2800 1.6512 -3.6901 12 6 4.9817 1.7816 -4.8707 13 6 5.3162 3.0376 -5.3451 14 6 6.0883 3.1722 -6.6322 15 6 5.2661 3.9805 -7.6380 16 6 7.4115 3.8909 -6.3603 17 6 6.3712 1.7820 -7.2050 18 6 7.1439 1.9166 -8.4919 19 1 7.4072 2.8958 -8.8637 20 6 7.5155 0.7897 -9.1939 21 7 7.1953 -0.4027 -8.7409 22 14 8.4739 0.9566 -10.7887 23 1 9.7579 1.6539 -10.5238 24 1 8.7484 -0.3928 -11.3447 25 1 7.6767 1.7411 -11.7655 26 6 4.9452 4.1704 -4.6427 27 6 4.2382 4.0543 -3.4638 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 2.4721 1.3253 2.1150 32 1 3.6423 2.2369 1.1313 33 1 4.5269 0.1370 1.8485 34 1 3.0741 0.6432 -1.7461 35 1 4.0231 0.6701 -3.3188 36 1 5.2743 0.9013 -5.4237 37 1 5.0645 4.9709 -7.2299 38 1 5.8248 4.0783 -8.5688 39 1 4.3235 3.4685 -7.8316 40 1 7.9972 3.3150 -5.6438 41 1 7.9701 3.9879 -7.2913 42 1 7.2098 4.8813 -5.9524 43 1 6.9569 1.2060 -6.4885 44 1 5.4285 1.2701 -7.3987 45 1 7.4564 -1.1955 -9.2350 46 1 5.2097 5.1479 -5.0181 47 1 3.9496 4.9393 -2.9162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148909829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:05 Heat of formation + Delta-G solvation = -56.690619 kcal Electronic energy + Delta-G solvation = -26101.757723 eV Core-core repulsion = 22442.379714 eV Total energy + Delta-G solvation = -3659.378010 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.30576 -39.02366 -37.49480 -35.80278 -35.33867 -33.07150 -32.43515 -30.75248 -30.11054 -28.46484 -27.13044 -26.44513 -24.53888 -23.65593 -22.51169 -21.68789 -20.54697 -20.22684 -18.47796 -17.80721 -17.68722 -16.51776 -16.36727 -15.58147 -15.10573 -14.90701 -14.76341 -14.57849 -14.26354 -14.20529 -13.58212 -13.39563 -13.31872 -13.18207 -12.81667 -12.70811 -12.32225 -12.22502 -12.06397 -12.00001 -11.38902 -11.32969 -11.01167 -10.98400 -10.79499 -10.65333 -10.52521 -10.35881 -10.21784 -10.02056 -9.99509 -9.68643 -9.23639 -9.13941 -8.94083 -8.67235 -8.38158 -8.31569 -6.02467 -4.03109 1.12716 1.71124 1.79471 3.00886 3.23508 3.31273 3.36425 3.38268 3.97811 4.16500 4.38340 4.43592 4.77640 4.80112 4.94769 5.05442 5.11650 5.24888 5.31542 5.33925 5.34480 5.41754 5.59764 5.68050 5.76116 5.92699 5.95040 5.97841 6.21854 6.25914 6.29933 6.35443 6.36873 6.42076 6.55501 6.58182 6.64406 6.69790 6.84384 7.05990 7.07055 7.20646 7.30397 7.32108 7.46188 7.59501 7.72394 7.95914 8.18458 8.39499 9.00995 9.60203 11.09030 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019036 B = 0.002657 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.535412 B =10535.309742 C =11277.354511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.102 0.898 5 C 0.067 3.933 6 O -0.567 6.567 7 N -0.716 5.716 8 C 0.567 3.433 9 O -0.550 6.550 10 C -0.161 4.161 11 C -0.084 4.084 12 C -0.123 4.123 13 C -0.020 4.020 14 C -0.034 4.034 15 C -0.123 4.123 16 C -0.123 4.123 17 C 0.034 3.966 18 C -0.513 4.513 19 H 0.059 0.941 20 C 0.057 3.943 21 N -0.896 5.896 22 Si 0.888 3.112 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 C -0.133 4.133 27 C -0.062 4.062 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.379 0.621 34 H 0.405 0.595 35 H 0.119 0.881 36 H 0.144 0.856 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.034 0.966 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.260 0.740 46 H 0.125 0.875 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.510 2.727 17.779 20.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.179 4.179 3 C 0.072 3.928 4 H 0.120 0.880 5 C -0.013 4.013 6 O -0.372 6.372 7 N -0.368 5.368 8 C 0.356 3.644 9 O -0.430 6.430 10 C -0.164 4.164 11 C -0.103 4.103 12 C -0.140 4.140 13 C -0.020 4.020 14 C -0.034 4.034 15 C -0.181 4.181 16 C -0.181 4.181 17 C -0.003 4.003 18 C -0.551 4.551 19 H 0.077 0.923 20 C -0.144 4.144 21 N -0.535 5.535 22 Si 0.716 3.284 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.151 4.151 27 C -0.081 4.081 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.139 0.861 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.226 0.774 34 H 0.241 0.759 35 H 0.137 0.863 36 H 0.162 0.838 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.143 0.857 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.089 3.125 17.655 20.573 hybrid contribution 0.982 -0.406 -0.562 1.202 sum -9.107 2.719 17.093 19.558 Atomic orbital electron populations 1.23990 0.95765 1.02314 0.98738 1.22934 0.95739 0.98137 1.01083 1.20141 0.92343 0.96816 0.83492 0.87994 1.22597 0.92680 0.88575 0.97403 1.86464 1.51578 1.45257 1.53943 1.45886 1.57519 1.08689 1.24666 1.18451 0.78405 0.82745 0.84753 1.90717 1.55181 1.37241 1.59823 1.19680 1.05296 0.94908 0.96471 1.21258 0.97087 0.96938 0.94990 1.21450 0.98078 0.98900 0.95619 1.20581 0.93279 0.92479 0.95673 1.19797 0.93395 1.00290 0.89945 1.21758 0.99631 0.97218 0.99445 1.21760 0.96657 0.97633 1.02013 1.19234 0.96813 0.88737 0.95539 1.21197 1.34779 0.92422 1.06721 0.92295 1.24990 0.96207 0.95459 0.97708 1.69939 1.46851 0.97460 1.39268 0.86721 0.80562 0.77088 0.84010 1.20307 1.21400 1.20310 1.21031 0.99910 0.98938 0.95183 1.21113 0.95545 0.96268 0.95170 0.87796 0.88373 0.86075 0.92824 0.92750 0.77449 0.75902 0.86282 0.83849 0.94655 0.91245 0.93411 0.93415 0.91240 0.94648 0.96215 0.96213 0.92998 0.85744 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 14.32 29.01 0.42 -0.84 16 2 C -0.16 -1.37 8.57 -36.02 -0.31 -1.68 16 3 C 0.18 1.78 2.73 -69.08 -0.19 1.59 16 4 H 0.10 1.09 7.23 -51.93 -0.38 0.71 16 5 C 0.07 0.61 6.84 37.16 0.25 0.86 16 6 O -0.57 -5.05 12.95 -35.23 -0.46 -5.50 16 7 N -0.72 -8.36 4.97 -55.88 -0.28 -8.64 16 8 C 0.57 8.25 7.74 -12.33 -0.10 8.15 16 9 O -0.55 -9.28 16.01 5.32 0.09 -9.20 16 10 C -0.16 -2.42 5.87 -104.96 -0.62 -3.03 16 11 C -0.08 -1.24 9.54 -39.19 -0.37 -1.61 16 12 C -0.12 -2.11 8.96 -39.64 -0.36 -2.47 16 13 C -0.02 -0.35 4.77 -104.54 -0.50 -0.85 16 14 C -0.03 -0.66 0.61 -155.66 -0.09 -0.75 16 15 C -0.12 -2.24 8.03 37.16 0.30 -1.94 16 16 C -0.12 -2.24 8.03 37.16 0.30 -1.94 16 17 C 0.03 0.80 2.70 -27.88 -0.08 0.72 16 18 C -0.51 -13.43 7.65 -34.44 -0.26 -13.69 16 19 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -25.79 13.29 55.43 0.74 -25.05 16 22 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C -0.13 -2.06 8.69 -39.64 -0.34 -2.41 16 27 C -0.06 -0.94 9.60 -39.18 -0.38 -1.32 16 28 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 29 H 0.10 0.69 7.84 -52.48 -0.41 0.28 16 30 H 0.12 1.04 7.86 -52.49 -0.41 0.63 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.38 1.86 9.12 45.56 0.42 2.27 16 34 H 0.40 4.27 6.63 -40.82 -0.27 3.99 16 35 H 0.12 1.43 6.41 -52.49 -0.34 1.09 16 36 H 0.14 2.67 5.87 -52.49 -0.31 2.36 16 37 H 0.03 0.54 7.38 -51.93 -0.38 0.16 16 38 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 42 H 0.03 0.55 7.37 -51.93 -0.38 0.16 16 43 H 0.02 0.50 7.50 -51.93 -0.39 0.11 16 44 H 0.02 0.50 7.51 -51.93 -0.39 0.11 16 45 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.12 1.73 7.08 -52.49 -0.37 1.36 16 47 H 0.13 1.82 7.65 -52.49 -0.40 1.42 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -31.20 381.46 -7.86 -39.06 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.25 Total: 7.35 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -2.42 Total: -19.73 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.46 Total: -33.69 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.37 Total: -14.70 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.20 -7.86 -39.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148909829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.632 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds