Wall clock time and date at job start Tue Mar 31 2020 11:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50705 * 119.99902 * 2 1 4 4 H 1.08998 * 109.47264 * 4.99564 * 3 2 1 5 5 C 1.52997 * 109.47160 * 124.99759 * 3 2 1 6 6 O 1.42898 * 109.47319 * 54.99806 * 5 3 2 7 7 N 1.46504 * 109.46559 * 244.99716 * 3 2 1 8 8 C 1.34773 * 119.99858 * 155.00377 * 7 3 2 9 9 O 1.21552 * 120.00150 * 359.97438 * 8 7 3 10 10 C 1.47847 * 119.99905 * 179.97438 * 8 7 3 11 11 C 1.39576 * 120.14633 * 359.71957 * 10 8 7 12 12 C 1.37953 * 119.85220 * 179.74789 * 11 10 8 13 13 C 1.38357 * 120.14774 * 0.53152 * 12 11 10 14 14 C 1.50694 * 119.85690 * 179.72319 * 13 12 11 15 15 C 1.53001 * 109.47553 * 120.02127 * 14 13 12 16 16 C 1.53009 * 109.47022 * 240.02223 * 14 13 12 17 17 C 1.53003 * 109.47029 * 0.02562 * 14 13 12 18 18 C 1.50704 * 109.47057 * 180.02562 * 17 14 13 19 19 H 1.08000 * 120.00302 * 0.02562 * 18 17 14 20 20 C 1.37873 * 119.99857 * 179.97438 * 18 17 14 21 21 N 1.31518 * 120.00149 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99888 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47003 * 60.00119 * 22 20 18 24 24 H 1.48507 * 109.47109 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47136 * 299.99922 * 22 20 18 26 26 C 1.38359 * 120.29091 * 359.74293 * 13 12 11 27 27 C 1.37960 * 120.14800 * 359.97438 * 26 13 12 28 28 H 1.07998 * 120.00374 * 180.02562 * 1 2 3 29 29 H 1.08003 * 119.99851 * 0.02562 * 1 2 3 30 30 H 1.07995 * 119.99630 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47153 * 294.99499 * 5 3 2 32 32 H 1.09001 * 109.46832 * 174.99689 * 5 3 2 33 33 H 0.96701 * 113.99881 * 180.02562 * 6 5 3 34 34 H 0.97000 * 119.99822 * 334.99336 * 7 3 2 35 35 H 1.08001 * 120.07150 * 0.02562 * 11 10 8 36 36 H 1.07998 * 119.92865 * 180.27484 * 12 11 10 37 37 H 1.09000 * 109.47050 * 59.99629 * 15 14 13 38 38 H 1.09000 * 109.47302 * 179.97438 * 15 14 13 39 39 H 1.09002 * 109.46865 * 300.00308 * 15 14 13 40 40 H 1.09002 * 109.46789 * 60.00013 * 16 14 13 41 41 H 1.08999 * 109.46801 * 179.97438 * 16 14 13 42 42 H 1.08996 * 109.47075 * 299.99471 * 16 14 13 43 43 H 1.09001 * 109.47217 * 300.00232 * 17 14 13 44 44 H 1.08999 * 109.47090 * 60.00485 * 17 14 13 45 45 H 0.97002 * 119.99736 * 179.97438 * 21 20 18 46 46 H 1.07997 * 119.93086 * 179.97438 * 26 13 12 47 47 H 1.07997 * 120.08006 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3586 2.1317 0.0895 5 6 3.0350 1.3332 1.1816 6 8 3.8841 0.1851 1.1276 7 7 2.8132 1.4361 -1.2519 8 6 3.1406 2.6580 -1.7166 9 8 2.8134 3.6515 -1.0974 10 6 3.8977 2.7901 -2.9796 11 6 4.2800 1.6512 -3.6901 12 6 4.9817 1.7816 -4.8707 13 6 5.3162 3.0376 -5.3451 14 6 6.0883 3.1722 -6.6322 15 6 5.2661 3.9805 -7.6380 16 6 7.4115 3.8909 -6.3603 17 6 6.3712 1.7820 -7.2050 18 6 7.1439 1.9166 -8.4919 19 1 7.4072 2.8958 -8.8637 20 6 7.5155 0.7897 -9.1939 21 7 7.1953 -0.4027 -8.7409 22 14 8.4739 0.9566 -10.7887 23 1 9.7579 1.6539 -10.5238 24 1 8.7484 -0.3928 -11.3447 25 1 7.6767 1.7411 -11.7655 26 6 4.9452 4.1704 -4.6427 27 6 4.2382 4.0543 -3.4638 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9354 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 2.4721 1.3253 2.1150 32 1 3.6423 2.2369 1.1313 33 1 4.5269 0.1370 1.8485 34 1 3.0741 0.6432 -1.7461 35 1 4.0231 0.6701 -3.3188 36 1 5.2743 0.9013 -5.4237 37 1 5.0645 4.9709 -7.2299 38 1 5.8248 4.0783 -8.5688 39 1 4.3235 3.4685 -7.8316 40 1 7.9972 3.3150 -5.6438 41 1 7.9701 3.9879 -7.2913 42 1 7.2098 4.8813 -5.9524 43 1 6.9569 1.2060 -6.4885 44 1 5.4285 1.2701 -7.3987 45 1 7.4564 -1.1955 -9.2350 46 1 5.2097 5.1479 -5.0181 47 1 3.9496 4.9393 -2.9162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148909829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:04 Heat of formation + Delta-G solvation = -76.481992 kcal Electronic energy + Delta-G solvation = -26102.615942 eV Core-core repulsion = 22442.379714 eV Total energy + Delta-G solvation = -3660.236228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.45263 -40.26089 -38.36822 -37.25936 -36.13791 -34.52602 -33.85249 -32.00774 -31.34366 -29.43687 -28.88426 -27.91484 -25.97124 -24.97802 -23.63701 -23.02269 -21.56792 -21.10761 -19.97498 -18.88989 -18.42056 -18.27778 -17.42709 -16.63980 -16.57785 -16.19685 -15.91172 -15.69889 -15.61350 -15.24141 -14.95958 -14.79308 -14.50729 -14.25704 -14.05299 -13.87065 -13.69425 -13.62268 -13.43770 -12.97609 -12.87212 -12.70845 -12.69013 -12.30624 -12.28634 -12.09508 -11.96475 -11.92081 -11.65217 -11.28089 -10.91116 -10.85421 -10.79486 -10.49111 -10.48625 -10.21308 -9.90261 -9.60288 -8.12444 -6.18976 -0.10958 0.46483 1.13692 1.43141 1.44343 1.51448 1.82738 2.29543 2.45199 2.91454 3.22181 3.34765 3.63504 3.74786 3.86888 3.96167 4.03096 4.04968 4.28313 4.31454 4.41699 4.45152 4.48381 4.58119 4.59515 4.60477 4.72065 4.94875 4.96683 5.00216 5.04381 5.13083 5.14850 5.28833 5.34215 5.37055 5.40029 5.50423 5.53751 5.55805 5.64530 5.75431 5.81927 5.83172 5.92004 5.99298 6.35767 6.44950 6.84088 6.95304 7.10608 7.48220 8.99422 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019036 B = 0.002657 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.535412 B =10535.309742 C =11277.354511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.172 4.172 3 C 0.170 3.830 4 H 0.095 0.905 5 C 0.071 3.929 6 O -0.580 6.580 7 N -0.705 5.705 8 C 0.567 3.433 9 O -0.576 6.576 10 C -0.162 4.162 11 C -0.074 4.074 12 C -0.142 4.142 13 C -0.035 4.035 14 C -0.030 4.030 15 C -0.119 4.119 16 C -0.119 4.119 17 C 0.045 3.955 18 C -0.519 4.519 19 H 0.068 0.932 20 C 0.000 4.000 21 N -0.934 5.934 22 Si 0.952 3.048 23 H -0.269 1.269 24 H -0.290 1.290 25 H -0.269 1.269 26 C -0.125 4.125 27 C -0.062 4.062 28 H 0.120 0.880 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.395 0.605 34 H 0.410 0.590 35 H 0.143 0.857 36 H 0.118 0.882 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.056 0.944 42 H 0.068 0.932 43 H -0.009 1.009 44 H -0.009 1.009 45 H 0.259 0.741 46 H 0.147 0.853 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.097 3.933 18.618 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.190 4.190 3 C 0.067 3.933 4 H 0.113 0.887 5 C -0.008 4.008 6 O -0.388 6.388 7 N -0.356 5.356 8 C 0.356 3.644 9 O -0.457 6.457 10 C -0.165 4.165 11 C -0.093 4.093 12 C -0.160 4.160 13 C -0.036 4.036 14 C -0.030 4.030 15 C -0.176 4.176 16 C -0.177 4.177 17 C 0.008 3.992 18 C -0.557 4.557 19 H 0.086 0.914 20 C -0.197 4.197 21 N -0.575 5.575 22 Si 0.778 3.222 23 H -0.194 1.194 24 H -0.215 1.215 25 H -0.194 1.194 26 C -0.143 4.143 27 C -0.081 4.081 28 H 0.138 0.862 29 H 0.120 0.880 30 H 0.139 0.861 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.245 0.755 34 H 0.247 0.753 35 H 0.161 0.839 36 H 0.136 0.864 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.009 0.991 44 H 0.009 0.991 45 H 0.068 0.932 46 H 0.165 0.835 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.670 4.318 18.509 21.796 hybrid contribution 1.095 -0.832 -0.720 1.552 sum -9.575 3.486 17.789 20.500 Atomic orbital electron populations 1.24190 0.95430 1.03283 0.96655 1.22810 0.96019 0.97218 1.02951 1.20308 0.92543 0.97520 0.82965 0.88662 1.22502 0.92489 0.87912 0.97873 1.86419 1.52166 1.44974 1.55216 1.45894 1.56625 1.07968 1.25100 1.18365 0.78357 0.83243 0.84448 1.90704 1.56402 1.38173 1.60463 1.19865 1.04952 0.95009 0.96691 1.21372 0.95872 0.98227 0.93796 1.21326 0.99694 0.98198 0.96772 1.20450 0.94308 0.93369 0.95434 1.19638 0.94716 0.97545 0.91117 1.21708 0.98605 0.98648 0.98674 1.21711 0.95584 0.99100 1.01258 1.19033 0.94508 0.91240 0.94385 1.21636 1.34099 0.92678 1.07324 0.91439 1.25849 0.97452 0.95246 1.01176 1.70083 1.48460 0.98184 1.40812 0.85692 0.79449 0.76987 0.80080 1.19373 1.21544 1.19377 1.21132 0.99289 0.98984 0.94861 1.21308 0.95005 0.96778 0.94995 0.86194 0.88024 0.86059 0.90677 0.94499 0.75494 0.75265 0.83912 0.86425 0.91280 0.92539 0.94397 0.94420 0.92530 0.91270 0.99082 0.99056 0.93178 0.83490 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 14.32 67.78 0.97 -1.02 16 2 C -0.17 -2.63 8.57 25.65 0.22 -2.41 16 3 C 0.17 3.22 2.73 44.25 0.12 3.34 16 4 H 0.10 1.94 7.23 -2.39 -0.02 1.92 16 5 C 0.07 1.20 6.84 71.98 0.49 1.70 16 6 O -0.58 -9.46 12.95 -148.98 -1.93 -11.39 16 7 N -0.71 -15.66 4.97 -448.97 -2.23 -17.89 16 8 C 0.57 15.86 7.74 86.79 0.67 16.53 16 9 O -0.58 -18.86 16.01 -3.88 -0.06 -18.92 16 10 C -0.16 -4.69 5.87 -20.09 -0.12 -4.81 16 11 C -0.07 -2.15 9.54 22.53 0.21 -1.93 16 12 C -0.14 -5.00 8.96 22.23 0.20 -4.80 16 13 C -0.04 -1.22 4.77 -19.81 -0.09 -1.32 16 14 C -0.03 -1.16 0.61 -52.92 -0.03 -1.19 16 15 C -0.12 -4.21 8.03 71.98 0.58 -3.63 16 16 C -0.12 -4.22 8.03 71.99 0.58 -3.64 16 17 C 0.05 2.24 2.70 29.85 0.08 2.32 16 18 C -0.52 -27.72 7.65 25.60 0.20 -27.52 16 19 H 0.07 3.42 5.68 -2.91 -0.02 3.40 16 20 C 0.00 0.00 5.46 84.65 0.46 0.46 16 21 N -0.93 -55.56 13.29 21.45 0.28 -55.27 16 22 Si 0.95 43.39 29.54 68.60 2.03 45.41 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 26 C -0.12 -3.63 8.69 22.23 0.19 -3.43 16 27 C -0.06 -1.77 9.60 22.53 0.22 -1.55 16 28 H 0.12 1.14 8.06 -2.91 -0.02 1.12 16 29 H 0.10 1.22 7.84 -2.91 -0.02 1.20 16 30 H 0.12 1.88 7.86 -2.91 -0.02 1.86 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.40 3.27 9.12 -74.06 -0.68 2.60 16 34 H 0.41 8.12 6.63 -92.71 -0.61 7.50 16 35 H 0.14 3.32 6.41 -2.91 -0.02 3.30 16 36 H 0.12 4.72 5.87 -2.91 -0.02 4.71 16 37 H 0.07 1.95 7.38 -2.39 -0.02 1.94 16 38 H 0.06 2.11 6.62 -2.39 -0.02 2.10 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.06 2.12 6.62 -2.39 -0.02 2.10 16 42 H 0.07 1.96 7.37 -2.39 -0.02 1.94 16 43 H -0.01 -0.50 7.50 -2.39 -0.02 -0.52 16 44 H -0.01 -0.48 7.51 -2.39 -0.02 -0.50 16 45 H 0.26 14.72 8.31 -92.71 -0.77 13.94 16 46 H 0.15 3.56 7.08 -2.91 -0.02 3.54 16 47 H 0.14 3.67 7.65 -2.91 -0.02 3.65 16 Total: -1.00 -68.18 381.46 2.74 -65.44 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -0.30 Total: 25.54 kcal Atomic # 6 Polarization: -37.87 SS G_CDS: 4.95 Total: -32.93 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -1.95 Total: -73.16 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -1.99 Total: -30.31 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -68.18 2.74 -65.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148909829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.040 kcal (2) G-P(sol) polarization free energy of solvation -68.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds