Wall clock time and date at job start Tue Mar 31 2020 12:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47428 * 2 1 4 4 C 1.52999 * 109.47428 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47171 * 179.97438 * 4 3 2 6 6 C 1.36875 * 119.99508 * 96.19788 * 5 4 3 7 7 H 1.08002 * 120.00046 * 216.26361 * 6 5 4 8 8 C 1.39045 * 120.00129 * 36.27433 * 6 5 4 9 9 N 1.31363 * 120.00026 * 21.15139 * 8 6 5 10 10 Si 1.86798 * 120.00205 * 201.14999 * 8 6 5 11 11 H 1.48500 * 109.47021 * 0.02562 * 10 8 6 12 12 H 1.48510 * 109.47126 * 119.99753 * 10 8 6 13 13 H 1.48499 * 109.47536 * 239.99999 * 10 8 6 14 14 C 1.34772 * 120.00227 * 276.20010 * 5 4 3 15 15 O 1.21592 * 120.00080 * 2.79979 * 14 5 4 16 16 C 1.47736 * 120.00106 * 182.79882 * 14 5 4 17 17 C 1.39790 * 120.16732 * 24.95310 * 16 14 5 18 18 C 1.37939 * 119.59386 * 179.97438 * 17 16 14 19 19 C 1.38104 * 120.52969 * 359.82677 * 18 17 16 20 20 C 1.39393 * 120.56325 * 0.04387 * 19 18 17 21 21 C 1.38642 * 118.96261 * 0.02865 * 20 19 18 22 22 C 1.51621 * 107.11855 * 178.85932 * 21 20 19 23 23 C 1.54720 * 101.97131 * 345.11017 * 22 21 20 24 24 C 1.53001 * 110.75729 * 266.67824 * 23 22 21 25 25 C 1.52999 * 110.91512 * 143.37744 * 23 22 21 26 26 O 1.36181 * 129.81412 * 180.62532 * 20 19 18 27 27 H 1.09000 * 109.47312 * 299.99724 * 1 2 3 28 28 H 1.09003 * 109.46975 * 59.99937 * 1 2 3 29 29 H 1.09006 * 109.47155 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47017 * 239.99886 * 2 1 3 31 31 H 1.09003 * 109.46975 * 120.00063 * 2 1 3 32 32 H 1.09005 * 109.47115 * 59.99946 * 3 2 1 33 33 H 1.09003 * 109.47094 * 299.99990 * 3 2 1 34 34 H 1.09000 * 109.47312 * 60.00276 * 4 3 2 35 35 H 1.09003 * 109.46975 * 300.00063 * 4 3 2 36 36 H 0.97004 * 120.00479 * 180.02562 * 9 8 6 37 37 H 1.08000 * 120.20408 * 359.94293 * 17 16 14 38 38 H 1.08001 * 119.73548 * 179.80093 * 18 17 16 39 39 H 1.08003 * 119.71854 * 180.02562 * 19 18 17 40 40 H 1.09000 * 111.10402 * 226.85322 * 22 21 20 41 41 H 1.09000 * 110.76194 * 103.21279 * 22 21 20 42 42 H 1.08991 * 109.46931 * 174.77981 * 24 23 22 43 43 H 1.08997 * 109.46872 * 294.78098 * 24 23 22 44 44 H 1.08997 * 109.47017 * 54.77595 * 24 23 22 45 45 H 1.09004 * 109.47396 * 305.12992 * 25 23 22 46 46 H 1.09002 * 109.47241 * 65.13102 * 25 23 22 47 47 H 1.08994 * 109.47441 * 185.12912 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 -0.0013 6 6 4.4076 3.4265 1.1769 7 1 4.2061 4.4769 1.3266 8 6 5.0221 2.6865 2.1811 9 7 5.6384 1.5644 1.8866 10 14 4.9714 3.2881 3.9488 11 1 4.2210 4.5679 4.0148 12 1 4.2954 2.2742 4.7976 13 1 6.3568 3.5003 4.4395 14 6 4.1637 3.5007 -1.1618 15 8 3.8056 2.9832 -2.2022 16 6 4.7142 4.8716 -1.1699 17 6 5.5817 5.2863 -0.1552 18 6 6.0892 6.5688 -0.1747 19 6 5.7497 7.4423 -1.1892 20 6 4.8880 7.0430 -2.2096 21 6 4.3761 5.7546 -2.1903 22 6 3.4613 5.6199 -3.3919 23 6 3.2608 7.0960 -3.8098 24 6 2.0027 7.6770 -3.1614 25 6 3.1941 7.2284 -5.3326 26 8 4.4412 7.7348 -3.2941 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9288 -0.8909 35 1 3.9337 0.9284 0.8891 36 1 6.0668 1.0480 2.5871 37 1 5.8525 4.6069 0.6394 38 1 6.7570 6.8926 0.6098 39 1 6.1550 8.4433 -1.1917 40 1 2.5124 5.1616 -3.1133 41 1 3.9474 5.0529 -4.1859 42 1 1.9318 8.7395 -3.3938 43 1 1.1237 7.1611 -3.5475 44 1 2.0564 7.5442 -2.0809 45 1 4.0838 6.7808 -5.7756 46 1 2.3064 6.7157 -5.7033 47 1 3.1444 8.2828 -5.6038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155747062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:25 Heat of formation + Delta-G solvation = -59.845179 kcal Electronic energy + Delta-G solvation = -27677.255930 eV Core-core repulsion = 24017.741129 eV Total energy + Delta-G solvation = -3659.514802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.32909 -40.61390 -38.22581 -37.17953 -35.65856 -34.71831 -33.48539 -32.42547 -31.52551 -29.59426 -28.40349 -27.73365 -26.88503 -25.04961 -23.58092 -22.65344 -21.95973 -21.52744 -21.06908 -19.30723 -18.13058 -17.21822 -17.13226 -16.80672 -16.46012 -16.29303 -16.04073 -15.92923 -15.59577 -14.87385 -14.79485 -14.53644 -14.35906 -14.13624 -13.86074 -13.72708 -13.62824 -13.42513 -13.21634 -13.14425 -13.04004 -12.91805 -12.77538 -12.66892 -12.48555 -12.29109 -12.06740 -12.04080 -11.98398 -11.84105 -11.74203 -11.52838 -11.45452 -10.93635 -10.37903 -9.77391 -9.48370 -9.00995 -8.33924 -6.02901 0.07052 0.46681 1.42578 1.49837 1.61814 2.08422 2.25905 2.29297 2.84016 2.87210 3.15904 3.51943 3.57907 3.82860 3.96796 4.06141 4.08126 4.17376 4.26740 4.28034 4.33264 4.48875 4.56606 4.60357 4.63680 4.69376 4.74559 4.81465 4.82012 4.85187 4.86869 4.96854 5.00723 5.03890 5.07956 5.14999 5.17985 5.25435 5.32612 5.37187 5.39255 5.45742 5.52775 5.60700 5.65169 5.78430 5.94315 6.29729 6.41419 7.06645 7.52432 7.96373 8.68240 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011458 B = 0.005148 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.107336 B = 5438.095776 C = 7193.018532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.115 4.115 4 C 0.120 3.880 5 N -0.435 5.435 6 C -0.350 4.350 7 H 0.101 0.899 8 C 0.010 3.990 9 N -0.884 5.884 10 Si 0.975 3.025 11 H -0.258 1.258 12 H -0.278 1.278 13 H -0.273 1.273 14 C 0.486 3.514 15 O -0.629 6.629 16 C -0.086 4.086 17 C -0.119 4.119 18 C -0.101 4.101 19 C -0.122 4.122 20 C 0.075 3.925 21 C -0.149 4.149 22 C -0.087 4.087 23 C 0.097 3.903 24 C -0.156 4.156 25 C -0.134 4.134 26 O -0.305 6.305 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.028 0.972 35 H 0.094 0.906 36 H 0.276 0.724 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.155 0.845 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.042 0.958 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.241 8.717 -3.496 10.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.154 4.154 4 C -0.003 4.003 5 N -0.150 5.150 6 C -0.477 4.477 7 H 0.119 0.881 8 C -0.194 4.194 9 N -0.520 5.520 10 Si 0.798 3.202 11 H -0.181 1.181 12 H -0.203 1.203 13 H -0.199 1.199 14 C 0.277 3.723 15 O -0.519 6.519 16 C -0.089 4.089 17 C -0.138 4.138 18 C -0.119 4.119 19 C -0.141 4.141 20 C 0.031 3.969 21 C -0.151 4.151 22 C -0.124 4.124 23 C 0.060 3.940 24 C -0.213 4.213 25 C -0.191 4.191 26 O -0.221 6.221 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.176 0.824 38 H 0.182 0.818 39 H 0.173 0.827 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.061 0.939 45 H 0.079 0.921 46 H 0.114 0.886 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.245 8.461 -3.987 10.723 hybrid contribution 0.222 -0.541 0.803 0.993 sum -5.023 7.920 -3.184 9.904 Atomic orbital electron populations 1.21709 0.94107 1.02393 1.01739 1.21403 0.97156 0.94970 1.01761 1.21774 0.95356 0.97948 1.00326 1.21381 0.93252 0.84111 1.01563 1.43590 1.53941 1.12140 1.05337 1.19823 1.39147 0.97309 0.91423 0.88135 1.26116 0.93496 0.96218 1.03616 1.70016 1.30267 1.16552 1.35154 0.85143 0.78482 0.79024 0.77513 1.18140 1.20319 1.19870 1.18825 0.82253 0.87675 0.83536 1.90538 1.56556 1.71771 1.33021 1.19369 1.00220 0.93349 0.95920 1.22522 0.95205 0.97714 0.98350 1.21232 0.99671 0.92438 0.98545 1.20692 0.99673 1.01819 0.91877 1.19569 0.98042 0.89694 0.89642 1.20922 1.02688 0.94129 0.97408 1.21744 0.98863 0.96981 0.94836 1.23022 0.84833 0.89192 0.96951 1.22160 0.96065 1.02858 1.00263 1.21839 1.03757 1.04317 0.89185 1.86799 1.42771 1.52356 1.40156 0.92543 0.93099 0.90968 0.92520 0.91827 0.92678 0.94367 0.95315 0.88776 0.91446 0.82409 0.81842 0.82698 0.90556 0.90351 0.89623 0.89144 0.93926 0.92123 0.88572 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.91 71.98 0.71 -3.08 16 2 C -0.11 -3.82 5.93 30.59 0.18 -3.64 16 3 C -0.12 -4.81 5.49 30.59 0.17 -4.64 16 4 C 0.12 5.91 4.85 86.38 0.42 6.33 16 5 N -0.43 -22.48 2.54 -638.93 -1.62 -24.11 16 6 C -0.35 -17.26 6.07 84.10 0.51 -16.74 16 7 H 0.10 4.85 6.08 -2.91 -0.02 4.83 16 8 C 0.01 0.47 4.87 84.96 0.41 0.88 16 9 N -0.88 -45.01 11.45 21.68 0.25 -44.76 16 10 Si 0.98 37.35 29.60 68.60 2.03 39.38 16 11 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 12 H -0.28 -10.60 7.11 99.48 0.71 -9.89 16 13 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 14 C 0.49 25.61 7.41 86.76 0.64 26.25 16 15 O -0.63 -35.37 15.46 -4.01 -0.06 -35.43 16 16 C -0.09 -3.98 5.59 -20.18 -0.11 -4.10 16 17 C -0.12 -4.98 7.79 22.57 0.18 -4.81 16 18 C -0.10 -3.31 10.00 22.17 0.22 -3.08 16 19 C -0.12 -3.82 10.06 22.52 0.23 -3.60 16 20 C 0.08 2.72 6.94 22.64 0.16 2.88 16 21 C -0.15 -6.21 6.05 -19.26 -0.12 -6.32 16 22 C -0.09 -3.19 5.06 30.73 0.16 -3.03 16 23 C 0.10 2.75 1.26 -10.21 -0.01 2.74 16 24 C -0.16 -3.77 8.85 71.98 0.64 -3.13 16 25 C -0.13 -2.81 8.96 71.98 0.65 -2.16 16 26 O -0.31 -9.98 10.53 -95.61 -1.01 -10.99 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.04 1.69 8.07 -2.39 -0.02 1.67 16 34 H 0.03 1.50 7.66 -2.39 -0.02 1.48 16 35 H 0.09 4.79 5.50 -2.39 -0.01 4.78 16 36 H 0.28 13.11 8.31 -92.71 -0.77 12.34 16 37 H 0.16 7.14 5.01 -2.91 -0.01 7.13 16 38 H 0.16 4.07 8.06 -2.91 -0.02 4.04 16 39 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 40 H 0.08 2.92 7.90 -2.39 -0.02 2.91 16 41 H 0.08 2.97 7.91 -2.39 -0.02 2.95 16 42 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.04 1.20 8.12 -2.39 -0.02 1.18 16 45 H 0.06 1.35 8.12 -2.38 -0.02 1.33 16 46 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -63.56 376.19 5.56 -57.99 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: 0.95 Total: 37.19 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 5.02 Total: -19.27 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -1.37 Total: -68.87 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -1.07 Total: -46.42 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Total: -63.56 5.56 -57.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155747062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.851 kcal (2) G-P(sol) polarization free energy of solvation -63.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds