Wall clock time and date at job start Tue Mar 31 2020 12:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47500 * 2 1 4 4 C 1.52994 * 109.47073 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.46919 * 185.32059 * 4 3 2 6 6 C 1.46908 * 110.99751 * 160.31130 * 5 4 3 7 7 C 1.50699 * 109.46837 * 288.26275 * 6 5 4 8 8 H 1.08004 * 120.00582 * 354.93688 * 7 6 5 9 9 C 1.37881 * 119.99677 * 174.93290 * 7 6 5 10 10 N 1.31517 * 119.99933 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00057 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46968 * 90.00272 * 11 9 7 13 13 H 1.48504 * 109.47193 * 210.00014 * 11 9 7 14 14 H 1.48501 * 109.47387 * 330.00353 * 11 9 7 15 15 C 1.46898 * 111.00129 * 284.26318 * 5 4 3 16 16 C 1.53005 * 109.46967 * 175.00211 * 15 5 4 17 17 C 1.52998 * 109.46809 * 180.02562 * 16 15 5 18 18 C 1.53009 * 109.46925 * 299.99661 * 17 16 15 19 19 S 1.81400 * 109.46886 * 180.02562 * 18 17 16 20 20 C 1.81403 * 101.92166 * 184.99910 * 19 18 17 21 21 O 1.42100 * 108.58164 * 299.48910 * 19 18 17 22 22 O 1.42104 * 108.57846 * 70.51519 * 19 18 17 23 23 C 1.52996 * 109.46920 * 60.00554 * 18 17 16 24 24 C 1.52998 * 109.46869 * 299.99480 * 23 18 17 25 25 H 1.09002 * 109.47084 * 59.99349 * 1 2 3 26 26 H 1.08989 * 109.47400 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46716 * 299.99558 * 1 2 3 28 28 H 1.09006 * 109.46716 * 240.00442 * 2 1 3 29 29 H 1.08992 * 109.47160 * 120.00739 * 2 1 3 30 30 H 1.09006 * 109.46775 * 60.00479 * 3 2 1 31 31 H 1.08992 * 109.47517 * 300.00521 * 3 2 1 32 32 H 1.08995 * 109.47201 * 65.32541 * 4 3 2 33 33 H 1.08996 * 109.47524 * 305.31996 * 4 3 2 34 34 H 1.08997 * 109.47194 * 48.26823 * 6 5 4 35 35 H 1.09002 * 109.46930 * 168.27073 * 6 5 4 36 36 H 0.96995 * 120.00361 * 179.97438 * 10 9 7 37 37 H 1.08999 * 109.47149 * 54.99694 * 15 5 4 38 38 H 1.08995 * 109.47292 * 60.00436 * 16 15 5 39 39 H 1.08995 * 109.46748 * 299.99827 * 16 15 5 40 40 H 1.09001 * 109.47440 * 179.97438 * 17 16 15 41 41 H 1.08999 * 109.47483 * 59.99376 * 17 16 15 42 42 H 1.08999 * 109.46807 * 300.00128 * 18 17 16 43 43 H 1.09001 * 109.46921 * 59.99817 * 20 19 18 44 44 H 1.09001 * 109.47148 * 180.02562 * 20 19 18 45 45 H 1.09000 * 109.46883 * 300.00607 * 20 19 18 46 46 H 1.08995 * 109.47900 * 59.99673 * 23 18 17 47 47 H 1.09002 * 109.46915 * 180.02562 * 23 18 17 48 48 H 1.08999 * 109.47558 * 300.00256 * 24 23 18 49 49 H 1.09001 * 109.47440 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0598 2.8214 0.1278 6 6 5.4530 2.8440 0.5934 7 6 5.5043 2.4395 2.0442 8 1 4.5881 2.2700 2.5904 9 6 6.7210 2.2859 2.6744 10 7 6.7659 1.9324 3.9404 11 14 8.3057 2.5783 1.7296 12 1 8.7011 4.0042 1.8555 13 1 9.3795 1.7159 2.2851 14 1 8.0963 2.2473 0.2972 15 6 3.9163 3.5512 -1.1390 16 6 4.3188 5.0130 -0.9338 17 6 4.1686 5.7732 -2.2530 18 6 5.0723 5.1393 -3.3126 19 16 4.8948 6.0411 -4.8765 20 6 5.9118 5.0451 -6.0010 21 8 3.5400 5.9567 -5.2967 22 8 5.4983 7.3196 -4.7329 23 6 4.6698 3.6776 -3.5178 24 6 4.8199 2.9174 -2.1985 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0275 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8898 30 1 1.6768 1.9562 0.8901 31 1 1.6768 1.9564 -0.8898 32 1 3.9330 1.0135 -0.9346 33 1 3.9338 0.8481 0.8376 34 1 6.0455 2.1471 0.0007 35 1 5.8569 3.8503 0.4823 36 1 7.6218 1.8239 4.3836 37 1 2.8791 3.5029 -1.4706 38 1 5.3560 5.0612 -0.6023 39 1 3.6747 5.4646 -0.1793 40 1 4.4549 6.8148 -2.1069 41 1 3.1313 5.7249 -2.5842 42 1 6.1096 5.1876 -2.9814 43 1 5.5168 4.0301 -6.0453 44 1 5.8915 5.4872 -6.9971 45 1 6.9385 5.0197 -5.6359 46 1 3.6325 3.6293 -3.8489 47 1 5.3138 3.2259 -4.2723 48 1 5.8573 2.9656 -1.8674 49 1 4.5336 1.8758 -2.3447 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169884862.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:56 Heat of formation + Delta-G solvation = -88.084259 kcal Electronic energy + Delta-G solvation = -26259.128200 eV Core-core repulsion = 22733.832811 eV Total energy + Delta-G solvation = -3525.295389 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.39359 -37.17309 -36.30054 -36.15575 -34.25585 -32.48197 -31.23958 -29.94695 -29.48889 -28.89803 -26.31447 -23.40345 -22.67843 -22.48986 -20.94356 -20.55173 -18.98023 -18.72928 -17.20181 -16.87066 -16.31618 -16.08920 -15.47690 -14.93640 -14.85611 -14.37767 -14.09847 -13.90877 -13.76088 -13.73552 -13.50396 -13.22586 -12.87174 -12.67778 -12.51444 -12.33003 -12.27938 -12.20752 -12.16458 -11.97046 -11.73266 -11.50249 -11.23980 -11.18018 -10.97730 -10.87222 -10.70287 -10.57989 -10.48658 -10.21339 -10.15185 -10.03201 -9.82577 -9.70759 -9.26811 -8.58503 -7.33035 -6.07692 -4.04018 -0.21579 2.50917 3.22677 3.29405 3.31028 3.41026 3.76359 4.28638 4.30094 4.37432 4.48979 4.55438 4.71066 4.95407 5.03613 5.16690 5.21122 5.23664 5.25505 5.29242 5.35341 5.40225 5.43908 5.50182 5.68772 5.72608 5.79092 5.81680 5.84657 6.02171 6.05759 6.09057 6.11074 6.17560 6.21624 6.34959 6.45742 6.50872 6.56929 6.69283 6.77119 6.91045 6.98322 7.61818 7.90854 8.06257 8.65404 9.03866 9.54556 11.05757 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010127 B = 0.004593 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.141427 B = 6094.569981 C = 8157.513532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.112 4.112 4 C 0.057 3.943 5 N -0.519 5.519 6 C 0.156 3.844 7 C -0.505 4.505 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.900 5.900 11 Si 0.870 3.130 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.269 1.269 15 C 0.082 3.918 16 C -0.106 4.106 17 C -0.102 4.102 18 C -0.563 4.563 19 S 2.415 3.585 20 C -0.659 4.659 21 O -0.939 6.939 22 O -0.944 6.944 23 C -0.104 4.104 24 C -0.150 4.150 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.023 0.977 33 H 0.086 0.914 34 H -0.009 1.009 35 H 0.028 0.972 36 H 0.263 0.737 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.126 0.874 45 H 0.128 0.872 46 H 0.082 0.918 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.920 1.962 -18.208 18.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.071 4.071 5 N -0.241 5.241 6 C 0.030 3.970 7 C -0.544 4.544 8 H 0.099 0.901 9 C -0.133 4.133 10 N -0.540 5.540 11 Si 0.697 3.303 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.194 1.194 15 C -0.027 4.027 16 C -0.144 4.144 17 C -0.141 4.141 18 C -0.673 4.673 19 S 2.599 3.401 20 C -0.808 4.808 21 O -0.936 6.936 22 O -0.941 6.941 23 C -0.142 4.142 24 C -0.190 4.190 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.105 0.895 34 H 0.008 0.992 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.145 0.855 45 H 0.147 0.853 46 H 0.101 0.899 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.546 2.949 -17.899 18.969 hybrid contribution 2.163 -1.040 -0.872 2.553 sum -3.384 1.909 -18.771 19.169 Atomic orbital electron populations 1.21754 0.96360 1.00960 1.01595 1.21495 0.95301 0.97635 1.01769 1.21580 0.95971 0.95547 1.01872 1.22097 0.94052 0.90459 1.00473 1.62148 1.23636 1.13721 1.24581 1.20287 0.84259 0.96013 0.96466 1.21063 0.94410 1.45438 0.93453 0.90141 1.24899 0.98646 0.95040 0.94726 1.69889 1.25613 1.48209 1.10251 0.86949 0.84118 0.78562 0.80621 1.20190 1.21265 1.19352 1.21734 0.98294 0.93595 0.89070 1.21567 1.03283 0.94531 0.95048 1.21374 0.98584 0.99407 0.94763 1.30187 1.09837 1.08781 1.18463 1.08105 0.76362 0.77006 0.78658 1.30307 1.16593 1.16741 1.17187 1.93576 1.32149 1.87104 1.80803 1.93589 1.78718 1.36090 1.85701 1.21429 1.02524 0.90536 0.99755 1.22239 1.02322 0.99693 0.94775 0.93157 0.93294 0.92735 0.92712 0.91823 0.91238 0.93103 0.95875 0.89539 0.99168 0.95444 0.92719 0.90626 0.90843 0.90174 0.90399 0.90155 0.84463 0.85110 0.85495 0.85323 0.89913 0.91098 0.91126 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.60 5.93 -26.73 -0.16 -1.76 16 3 C -0.11 -1.65 5.24 -26.73 -0.14 -1.79 16 4 C 0.06 1.00 4.71 -3.82 -0.02 0.99 16 5 N -0.52 -9.84 4.37 -228.08 -1.00 -10.84 16 6 C 0.16 3.50 2.74 -4.97 -0.01 3.48 16 7 C -0.51 -13.77 8.84 -34.44 -0.30 -14.08 16 8 H 0.08 2.43 8.05 -52.48 -0.42 2.01 16 9 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 10 N -0.90 -27.06 13.96 55.43 0.77 -26.28 16 11 Si 0.87 20.79 27.57 -169.99 -4.69 16.11 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.27 -6.09 6.40 56.52 0.36 -5.73 16 15 C 0.08 1.24 2.14 -67.71 -0.14 1.10 16 16 C -0.11 -1.52 5.05 -26.73 -0.14 -1.66 16 17 C -0.10 -1.18 5.20 -26.73 -0.14 -1.32 16 18 C -0.56 -5.50 2.62 -26.73 -0.07 -5.57 16 19 S 2.41 22.95 4.90 -107.50 -0.53 22.42 16 20 C -0.66 -3.88 10.01 101.05 1.01 -2.87 16 21 O -0.94 -11.80 18.06 -57.83 -1.04 -12.84 16 22 O -0.94 -12.36 18.10 -57.83 -1.05 -13.40 16 23 C -0.10 -1.00 4.91 -26.73 -0.13 -1.13 16 24 C -0.15 -1.99 4.58 -26.73 -0.12 -2.11 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.49 8.14 -51.94 -0.42 0.06 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.70 7.04 -51.93 -0.37 0.33 16 32 H 0.02 0.38 5.88 -51.93 -0.31 0.07 16 33 H 0.09 1.78 7.10 -51.93 -0.37 1.41 16 34 H -0.01 -0.21 5.83 -51.93 -0.30 -0.52 16 35 H 0.03 0.62 5.36 -51.93 -0.28 0.34 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.08 1.07 6.84 -51.93 -0.36 0.72 16 38 H 0.07 1.16 6.13 -51.93 -0.32 0.84 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.14 1.18 8.14 -51.92 -0.42 0.75 16 43 H 0.13 0.57 6.78 -51.92 -0.35 0.22 16 44 H 0.13 0.63 8.14 -51.92 -0.42 0.21 16 45 H 0.13 0.57 8.14 -51.92 -0.42 0.15 16 46 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.07 0.48 6.39 -51.93 -0.33 0.15 16 48 H 0.07 1.05 6.76 -51.93 -0.35 0.70 16 49 H 0.07 0.93 6.25 -51.93 -0.32 0.60 16 LS Contribution 377.48 15.07 5.69 5.69 Total: -1.00 -34.20 377.48 -10.68 -44.88 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -8.75 Total: 0.46 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: -0.09 Total: -26.19 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.22 Total: -37.12 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -2.09 Total: -26.25 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.69 Total: 16.11 kcal Atomic # 16 Polarization: 22.95 SS G_CDS: -0.53 Total: 22.42 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.20 -10.68 -44.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169884862.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.207 kcal (2) G-P(sol) polarization free energy of solvation -34.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds