Wall clock time and date at job start Tue Mar 31 2020 12:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47500 * 2 1 4 4 C 1.52994 * 109.47073 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.46919 * 185.32059 * 4 3 2 6 6 C 1.46908 * 110.99751 * 160.31130 * 5 4 3 7 7 C 1.50699 * 109.46837 * 288.26275 * 6 5 4 8 8 H 1.08004 * 120.00582 * 354.93688 * 7 6 5 9 9 C 1.37881 * 119.99677 * 174.93290 * 7 6 5 10 10 N 1.31517 * 119.99933 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00057 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46968 * 90.00272 * 11 9 7 13 13 H 1.48504 * 109.47193 * 210.00014 * 11 9 7 14 14 H 1.48501 * 109.47387 * 330.00353 * 11 9 7 15 15 C 1.46898 * 111.00129 * 284.26318 * 5 4 3 16 16 C 1.53005 * 109.46967 * 175.00211 * 15 5 4 17 17 C 1.52998 * 109.46809 * 180.02562 * 16 15 5 18 18 C 1.53009 * 109.46925 * 299.99661 * 17 16 15 19 19 S 1.81400 * 109.46886 * 180.02562 * 18 17 16 20 20 C 1.81403 * 101.92166 * 184.99910 * 19 18 17 21 21 O 1.42100 * 108.58164 * 299.48910 * 19 18 17 22 22 O 1.42104 * 108.57846 * 70.51519 * 19 18 17 23 23 C 1.52996 * 109.46920 * 60.00554 * 18 17 16 24 24 C 1.52998 * 109.46869 * 299.99480 * 23 18 17 25 25 H 1.09002 * 109.47084 * 59.99349 * 1 2 3 26 26 H 1.08989 * 109.47400 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46716 * 299.99558 * 1 2 3 28 28 H 1.09006 * 109.46716 * 240.00442 * 2 1 3 29 29 H 1.08992 * 109.47160 * 120.00739 * 2 1 3 30 30 H 1.09006 * 109.46775 * 60.00479 * 3 2 1 31 31 H 1.08992 * 109.47517 * 300.00521 * 3 2 1 32 32 H 1.08995 * 109.47201 * 65.32541 * 4 3 2 33 33 H 1.08996 * 109.47524 * 305.31996 * 4 3 2 34 34 H 1.08997 * 109.47194 * 48.26823 * 6 5 4 35 35 H 1.09002 * 109.46930 * 168.27073 * 6 5 4 36 36 H 0.96995 * 120.00361 * 179.97438 * 10 9 7 37 37 H 1.08999 * 109.47149 * 54.99694 * 15 5 4 38 38 H 1.08995 * 109.47292 * 60.00436 * 16 15 5 39 39 H 1.08995 * 109.46748 * 299.99827 * 16 15 5 40 40 H 1.09001 * 109.47440 * 179.97438 * 17 16 15 41 41 H 1.08999 * 109.47483 * 59.99376 * 17 16 15 42 42 H 1.08999 * 109.46807 * 300.00128 * 18 17 16 43 43 H 1.09001 * 109.46921 * 59.99817 * 20 19 18 44 44 H 1.09001 * 109.47148 * 180.02562 * 20 19 18 45 45 H 1.09000 * 109.46883 * 300.00607 * 20 19 18 46 46 H 1.08995 * 109.47900 * 59.99673 * 23 18 17 47 47 H 1.09002 * 109.46915 * 180.02562 * 23 18 17 48 48 H 1.08999 * 109.47558 * 300.00256 * 24 23 18 49 49 H 1.09001 * 109.47440 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0598 2.8214 0.1278 6 6 5.4530 2.8440 0.5934 7 6 5.5043 2.4395 2.0442 8 1 4.5881 2.2700 2.5904 9 6 6.7210 2.2859 2.6744 10 7 6.7659 1.9324 3.9404 11 14 8.3057 2.5783 1.7296 12 1 8.7011 4.0042 1.8555 13 1 9.3795 1.7159 2.2851 14 1 8.0963 2.2473 0.2972 15 6 3.9163 3.5512 -1.1390 16 6 4.3188 5.0130 -0.9338 17 6 4.1686 5.7732 -2.2530 18 6 5.0723 5.1393 -3.3126 19 16 4.8948 6.0411 -4.8765 20 6 5.9118 5.0451 -6.0010 21 8 3.5400 5.9567 -5.2967 22 8 5.4983 7.3196 -4.7329 23 6 4.6698 3.6776 -3.5178 24 6 4.8199 2.9174 -2.1985 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0275 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8898 30 1 1.6768 1.9562 0.8901 31 1 1.6768 1.9564 -0.8898 32 1 3.9330 1.0135 -0.9346 33 1 3.9338 0.8481 0.8376 34 1 6.0455 2.1471 0.0007 35 1 5.8569 3.8503 0.4823 36 1 7.6218 1.8239 4.3836 37 1 2.8791 3.5029 -1.4706 38 1 5.3560 5.0612 -0.6023 39 1 3.6747 5.4646 -0.1793 40 1 4.4549 6.8148 -2.1069 41 1 3.1313 5.7249 -2.5842 42 1 6.1096 5.1876 -2.9814 43 1 5.5168 4.0301 -6.0453 44 1 5.8915 5.4872 -6.9971 45 1 6.9385 5.0197 -5.6359 46 1 3.6325 3.6293 -3.8489 47 1 5.3138 3.2259 -4.2723 48 1 5.8573 2.9656 -1.8674 49 1 4.5336 1.8758 -2.3447 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169884862.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:55 Heat of formation + Delta-G solvation = -112.976858 kcal Electronic energy + Delta-G solvation = -26260.207624 eV Core-core repulsion = 22733.832811 eV Total energy + Delta-G solvation = -3526.374813 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.57967 -38.02005 -37.43257 -37.01467 -35.54543 -34.45691 -32.13291 -31.08572 -30.50565 -30.05254 -27.79719 -24.53890 -24.19911 -23.56990 -22.09906 -21.72149 -20.06345 -19.71550 -18.99632 -17.90968 -17.12002 -16.91701 -16.69114 -16.50251 -15.99923 -15.63509 -15.33361 -15.10332 -15.04148 -14.68576 -14.54137 -14.02876 -13.93193 -13.78939 -13.72625 -13.59947 -13.39836 -13.14852 -13.04819 -13.01728 -12.91732 -12.73900 -12.50634 -12.27178 -12.16047 -11.94138 -11.90452 -11.87767 -11.80929 -11.60167 -11.50759 -11.41408 -11.20255 -11.01126 -10.84579 -10.71283 -8.81287 -8.26032 -6.27636 -0.90659 1.32663 1.34251 1.43933 1.85827 2.34325 2.72766 3.07679 3.07794 3.20905 3.50749 3.57371 3.93386 4.07289 4.11533 4.13926 4.16008 4.25417 4.28677 4.30857 4.36095 4.45384 4.50809 4.52587 4.66978 4.74063 4.81058 4.86195 4.91170 4.94331 4.97515 5.01834 5.03879 5.05544 5.11577 5.15119 5.21314 5.25448 5.32347 5.37794 5.47896 5.52251 5.56623 5.63782 6.08007 6.51711 6.76369 6.81068 7.35610 8.91248 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010127 B = 0.004593 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.141427 B = 6094.569981 C = 8157.513532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C -0.102 4.102 4 C 0.061 3.939 5 N -0.539 5.539 6 C 0.171 3.829 7 C -0.509 4.509 8 H 0.031 0.969 9 C 0.006 3.994 10 N -0.952 5.952 11 Si 0.941 3.059 12 H -0.267 1.267 13 H -0.285 1.285 14 H -0.244 1.244 15 C 0.079 3.921 16 C -0.105 4.105 17 C -0.104 4.104 18 C -0.565 4.565 19 S 2.423 3.577 20 C -0.640 4.640 21 O -0.975 6.975 22 O -0.987 6.987 23 C -0.103 4.103 24 C -0.148 4.148 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.044 0.956 34 H -0.008 1.008 35 H 0.032 0.968 36 H 0.264 0.736 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.151 0.849 43 H 0.156 0.844 44 H 0.141 0.859 45 H 0.151 0.849 46 H 0.091 0.909 47 H 0.111 0.889 48 H 0.055 0.945 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.042 1.589 -22.403 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C -0.140 4.140 4 C -0.067 4.067 5 N -0.262 5.262 6 C 0.044 3.956 7 C -0.548 4.548 8 H 0.049 0.951 9 C -0.191 4.191 10 N -0.593 5.593 11 Si 0.765 3.235 12 H -0.192 1.192 13 H -0.211 1.211 14 H -0.167 1.167 15 C -0.029 4.029 16 C -0.144 4.144 17 C -0.143 4.143 18 C -0.674 4.674 19 S 2.611 3.389 20 C -0.793 4.793 21 O -0.972 6.972 22 O -0.984 6.984 23 C -0.142 4.142 24 C -0.188 4.188 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.010 0.990 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.169 0.831 43 H 0.174 0.826 44 H 0.160 0.840 45 H 0.170 0.830 46 H 0.110 0.890 47 H 0.129 0.871 48 H 0.074 0.926 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.720 2.604 -22.087 22.735 hybrid contribution 1.805 -0.958 0.475 2.098 sum -2.915 1.646 -21.612 21.869 Atomic orbital electron populations 1.21722 0.94641 1.02040 1.01887 1.21473 0.96775 0.96018 1.01677 1.21491 0.93875 0.97028 1.01595 1.22044 0.95803 0.89378 0.99479 1.62030 1.21449 1.14875 1.27811 1.19968 0.86612 0.95726 0.93257 1.21332 0.92685 1.44846 0.95898 0.95078 1.25845 1.02830 0.94792 0.95631 1.70066 1.26683 1.50150 1.12435 0.85801 0.78725 0.78740 0.80229 1.19240 1.21136 1.16719 1.21857 0.99728 0.93421 0.87924 1.21512 1.01756 0.94632 0.96502 1.21341 0.99700 0.99379 0.93892 1.30194 1.10134 1.08850 1.18253 1.07576 0.75907 0.76680 0.78692 1.30138 1.16508 1.16709 1.15943 1.93530 1.34843 1.87660 1.81205 1.93538 1.79203 1.39261 1.86445 1.21515 1.04260 0.89797 0.98612 1.22159 1.00581 1.00202 0.95855 0.91897 0.91851 0.93420 0.91220 0.93529 0.93559 0.91167 0.93975 0.93749 0.98986 0.95005 0.92669 0.89410 0.92454 0.91774 0.90087 0.89580 0.83103 0.82610 0.84037 0.83032 0.89019 0.87084 0.92579 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.91 71.98 0.71 -2.31 16 2 C -0.12 -3.05 5.93 30.59 0.18 -2.87 16 3 C -0.10 -3.02 5.24 30.59 0.16 -2.86 16 4 C 0.06 2.17 4.71 86.30 0.41 2.58 16 5 N -0.54 -20.79 4.37 -875.50 -3.83 -24.61 16 6 C 0.17 7.78 2.74 85.55 0.23 8.01 16 7 C -0.51 -29.10 8.84 25.60 0.23 -28.87 16 8 H 0.03 2.02 8.05 -2.91 -0.02 2.00 16 9 C 0.01 0.32 5.47 84.66 0.46 0.79 16 10 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16 11 Si 0.94 43.07 27.57 68.60 1.89 44.96 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 14 H -0.24 -10.08 6.40 99.48 0.64 -9.45 16 15 C 0.08 2.30 2.14 44.92 0.10 2.39 16 16 C -0.11 -2.99 5.05 30.60 0.15 -2.84 16 17 C -0.10 -2.27 5.20 30.60 0.16 -2.11 16 18 C -0.56 -9.35 2.62 30.60 0.08 -9.27 16 19 S 2.42 39.23 4.90 -56.49 -0.28 38.95 16 20 C -0.64 -4.07 10.01 113.37 1.14 -2.94 16 21 O -0.98 -22.37 18.06 -127.37 -2.30 -24.67 16 22 O -0.99 -24.31 18.10 -127.37 -2.31 -26.62 16 23 C -0.10 -1.56 4.91 30.59 0.15 -1.41 16 24 C -0.15 -3.49 4.58 30.59 0.14 -3.35 16 25 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.07 1.80 7.04 -2.39 -0.02 1.79 16 32 H 0.04 1.33 5.88 -2.39 -0.01 1.31 16 33 H 0.04 1.93 7.10 -2.39 -0.02 1.92 16 34 H -0.01 -0.34 5.83 -2.39 -0.01 -0.35 16 35 H 0.03 1.43 5.36 -2.39 -0.01 1.42 16 36 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 37 H 0.09 2.34 6.84 -2.39 -0.02 2.32 16 38 H 0.06 1.79 6.13 -2.39 -0.01 1.78 16 39 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 42 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.16 0.32 6.78 -2.39 -0.02 0.30 16 44 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.15 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.11 0.82 6.39 -2.39 -0.02 0.81 16 48 H 0.06 1.50 6.76 -2.39 -0.02 1.48 16 49 H 0.07 1.69 6.25 -2.39 -0.01 1.68 16 Total: -1.00 -79.28 377.48 -1.38 -80.66 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.84 Total: 15.78 kcal Atomic # 6 Polarization: -49.36 SS G_CDS: 4.30 Total: -45.06 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -3.53 Total: -84.01 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -4.61 Total: -51.29 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.89 Total: 44.96 kcal Atomic # 16 Polarization: 39.23 SS G_CDS: -0.28 Total: 38.95 kcal Total: -79.28 -1.38 -80.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169884862.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.314 kcal (2) G-P(sol) polarization free energy of solvation -79.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds