Wall clock time and date at job start Tue Mar 31 2020 12:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47336 * 2 1 4 4 C 1.52991 * 109.47336 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47304 * 179.97438 * 4 3 2 6 6 C 1.37095 * 120.00423 * 263.25965 * 5 4 3 7 7 H 1.07994 * 119.99887 * 188.08755 * 6 5 4 8 8 C 1.38946 * 120.00055 * 8.07716 * 6 5 4 9 9 N 1.31415 * 119.99695 * 26.09203 * 8 6 5 10 10 Si 1.86797 * 120.00262 * 206.08487 * 8 6 5 11 11 H 1.48509 * 109.46771 * 84.99431 * 10 8 6 12 12 H 1.48504 * 109.47355 * 204.98934 * 10 8 6 13 13 H 1.48493 * 109.47275 * 324.99471 * 10 8 6 14 14 C 1.34785 * 119.99515 * 83.25505 * 5 4 3 15 15 O 1.21294 * 119.99697 * 0.02562 * 14 5 4 16 16 C 1.50692 * 119.99949 * 180.02562 * 14 5 4 17 17 C 1.53775 * 113.61694 * 179.97438 * 16 14 5 18 18 C 1.53778 * 87.08239 * 270.88772 * 17 16 14 19 19 O 1.42897 * 113.61745 * 89.11544 * 18 17 16 20 20 C 1.50705 * 113.61163 * 219.93325 * 18 17 16 21 21 C 1.38233 * 119.99870 * 28.19676 * 20 18 17 22 22 C 1.38242 * 119.99573 * 179.74254 * 21 20 18 23 23 C 1.38234 * 120.00018 * 0.55220 * 22 21 20 24 24 C 1.38231 * 120.00071 * 359.70016 * 23 22 21 25 25 C 1.38237 * 120.00249 * 0.02562 * 24 23 22 26 26 C 1.53780 * 87.08086 * 334.56375 * 18 17 16 27 27 H 1.09003 * 109.47578 * 60.00235 * 1 2 3 28 28 H 1.09004 * 109.47123 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47306 * 299.99958 * 1 2 3 30 30 H 1.09004 * 109.47075 * 240.00640 * 2 1 3 31 31 H 1.08996 * 109.47492 * 120.00184 * 2 1 3 32 32 H 1.08996 * 109.46889 * 59.99786 * 3 2 1 33 33 H 1.08996 * 109.46980 * 300.00497 * 3 2 1 34 34 H 1.09004 * 109.47075 * 60.00640 * 4 3 2 35 35 H 1.08996 * 109.47492 * 300.00184 * 4 3 2 36 36 H 0.97003 * 119.99865 * 179.97438 * 9 8 6 37 37 H 1.09000 * 112.90924 * 311.25392 * 16 14 5 38 38 H 1.08998 * 113.61863 * 156.33568 * 17 16 14 39 39 H 1.09005 * 113.68622 * 25.44522 * 17 16 14 40 40 H 0.96705 * 113.99771 * 179.97438 * 19 18 17 41 41 H 1.07992 * 120.00443 * 0.02562 * 21 20 18 42 42 H 1.08003 * 119.99827 * 180.27195 * 22 21 20 43 43 H 1.08003 * 119.99846 * 179.72619 * 23 22 21 44 44 H 1.08004 * 120.00010 * 179.97438 * 24 23 22 45 45 H 1.07994 * 120.00536 * 179.97438 * 25 24 23 46 46 H 1.09005 * 113.61073 * 139.98334 * 26 18 17 47 47 H 1.08997 * 113.61413 * 270.88607 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.4187 3.4229 -1.1792 7 1 4.8997 4.3898 -1.1687 8 6 4.1653 2.7862 -2.3879 9 7 3.1800 1.9217 -2.4811 10 14 5.2250 3.1591 -3.8803 11 1 6.4410 2.3071 -3.8493 12 1 4.4542 2.8767 -5.1178 13 1 5.6224 4.5898 -3.8602 14 6 4.1532 3.5054 1.1589 15 8 3.8346 2.9751 2.2022 16 6 4.6550 4.9263 1.1583 17 6 4.7032 5.5632 2.5572 18 6 3.2546 6.0183 2.3138 19 8 2.2768 5.0623 2.7286 20 6 2.9654 7.4082 2.8197 21 6 3.9805 8.3441 2.8875 22 6 3.7141 9.6206 3.3465 23 6 2.4351 9.9576 3.7485 24 6 1.4213 9.0202 3.6856 25 6 1.6863 7.7454 3.2213 26 6 3.5725 5.9618 0.8103 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8899 33 1 1.6766 1.9563 -0.8899 34 1 3.9336 0.9286 -0.8892 35 1 3.9329 0.9288 0.8908 36 1 3.0028 1.4774 -3.3251 37 1 5.5765 5.0507 0.5897 38 1 5.4121 6.3873 2.6376 39 1 4.8032 4.8384 3.3651 40 1 1.3637 5.3432 2.5784 41 1 4.9806 8.0795 2.5775 42 1 4.5062 10.3532 3.3953 43 1 2.2280 10.9536 4.1112 44 1 0.4221 9.2834 4.0001 45 1 0.8944 7.0128 3.1725 46 1 2.7595 5.5576 0.2071 47 1 3.9723 6.8948 0.4132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181619821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:15 Heat of formation + Delta-G solvation = -42.609591 kcal Electronic energy + Delta-G solvation = -27582.630103 eV Core-core repulsion = 23923.862692 eV Total energy + Delta-G solvation = -3658.767411 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.81590 -40.09076 -38.62942 -36.94811 -35.66785 -35.23942 -33.29337 -31.97748 -31.69554 -30.07196 -26.92351 -26.72282 -26.40138 -24.46564 -23.44188 -22.64709 -21.81673 -21.27299 -20.33929 -18.87062 -18.15111 -17.82021 -16.96230 -16.43161 -16.18474 -16.07011 -15.98033 -15.84311 -15.59270 -15.09971 -14.93903 -14.57584 -14.30604 -14.21449 -13.82173 -13.70183 -13.54862 -13.27225 -13.05898 -12.93285 -12.83134 -12.58304 -12.45534 -12.21962 -12.17725 -12.05549 -11.99358 -11.87964 -11.79522 -11.66774 -11.26834 -11.20856 -10.69452 -10.66462 -10.08405 -9.80019 -9.61354 -9.54879 -8.20637 -5.69556 0.42779 0.52052 1.44629 1.51963 1.59654 2.15631 2.35288 2.83232 3.02331 3.16115 3.25328 3.63420 3.71902 3.77366 4.00540 4.13327 4.17877 4.19270 4.26752 4.30742 4.45085 4.46466 4.59068 4.64914 4.67767 4.73960 4.78730 4.91620 4.94745 5.04927 5.06285 5.08314 5.12352 5.16365 5.17105 5.20549 5.28310 5.35501 5.41625 5.52704 5.59652 5.63826 5.65132 5.72074 5.89609 5.95107 6.12846 6.60371 6.84936 7.25649 7.77591 8.20757 8.79118 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013434 B = 0.004161 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.768456 B = 6727.933140 C = 7900.696188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C -0.093 4.093 4 C 0.145 3.855 5 N -0.456 5.456 6 C -0.353 4.353 7 H 0.106 0.894 8 C 0.000 4.000 9 N -0.871 5.871 10 Si 0.975 3.025 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.262 1.262 14 C 0.464 3.536 15 O -0.620 6.620 16 C -0.113 4.113 17 C -0.104 4.104 18 C 0.150 3.850 19 O -0.537 6.537 20 C -0.106 4.106 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.122 4.122 25 C -0.134 4.134 26 C -0.124 4.124 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.011 0.989 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.017 0.983 36 H 0.268 0.732 37 H 0.097 0.903 38 H 0.129 0.871 39 H 0.058 0.942 40 H 0.373 0.627 41 H 0.137 0.863 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.142 0.858 45 H 0.122 0.878 46 H 0.051 0.949 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.483 12.819 5.410 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C -0.131 4.131 4 C 0.021 3.979 5 N -0.174 5.174 6 C -0.480 4.480 7 H 0.124 0.876 8 C -0.203 4.203 9 N -0.509 5.509 10 Si 0.800 3.200 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.186 1.186 14 C 0.253 3.747 15 O -0.507 6.507 16 C -0.134 4.134 17 C -0.141 4.141 18 C 0.109 3.891 19 O -0.343 6.343 20 C -0.107 4.107 21 C -0.140 4.140 22 C -0.138 4.138 23 C -0.145 4.145 24 C -0.140 4.140 25 C -0.152 4.152 26 C -0.162 4.162 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.030 0.970 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.035 0.965 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.147 0.853 39 H 0.077 0.923 40 H 0.221 0.779 41 H 0.154 0.846 42 H 0.166 0.834 43 H 0.165 0.835 44 H 0.160 0.840 45 H 0.140 0.860 46 H 0.070 0.930 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.204 12.072 5.913 13.496 hybrid contribution -0.192 -0.151 -1.069 1.097 sum -1.396 11.921 4.844 12.943 Atomic orbital electron populations 1.21654 0.94809 1.01878 1.01155 1.21315 0.96662 0.96085 1.00607 1.21559 0.95334 0.96808 0.99403 1.21139 0.94812 0.83487 0.98446 1.43969 1.55974 1.11354 1.06094 1.19887 1.38745 1.06165 0.83181 0.87627 1.25866 0.96363 0.97134 1.00932 1.70251 1.24879 1.28790 1.27009 0.85215 0.78344 0.79065 0.77358 1.20633 1.21239 1.18602 1.20088 0.82973 0.88397 0.83236 1.90500 1.56172 1.71076 1.32918 1.22005 1.00385 0.92030 0.98952 1.23098 0.94465 1.00400 0.96140 1.20910 0.89999 0.84958 0.93241 1.86842 1.17953 1.44019 1.85471 1.20296 0.95136 0.95067 1.00153 1.21244 0.99141 0.93538 1.00096 1.21482 0.97916 0.96126 0.98250 1.21531 0.92972 1.00431 0.99600 1.21397 1.00606 0.92799 0.99219 1.21129 0.96241 0.97761 1.00060 1.23444 0.98130 0.98644 0.96005 0.93268 0.91156 0.93472 0.92401 0.93367 0.96989 0.90993 0.89916 0.96502 0.92215 0.88463 0.85321 0.92307 0.77860 0.84551 0.83385 0.83473 0.84043 0.86021 0.92981 0.86851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 9.91 71.98 0.71 -3.81 16 2 C -0.11 -4.27 5.93 30.59 0.18 -4.09 16 3 C -0.09 -4.44 5.02 30.59 0.15 -4.29 16 4 C 0.14 7.45 4.52 86.38 0.39 7.84 16 5 N -0.46 -23.78 2.64 -635.55 -1.68 -25.46 16 6 C -0.35 -17.74 9.22 84.04 0.77 -16.97 16 7 H 0.11 5.00 6.26 -2.91 -0.02 4.99 16 8 C 0.00 0.00 4.88 84.92 0.41 0.41 16 9 N -0.87 -43.90 8.72 21.66 0.19 -43.71 16 10 Si 0.98 38.95 29.63 68.60 2.03 40.98 16 11 H -0.28 -11.24 7.11 99.48 0.71 -10.54 16 12 H -0.29 -11.40 7.11 99.48 0.71 -10.69 16 13 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 14 C 0.46 23.47 6.49 87.65 0.57 24.03 16 15 O -0.62 -34.95 14.24 14.65 0.21 -34.74 16 16 C -0.11 -4.50 2.97 -11.02 -0.03 -4.54 16 17 C -0.10 -3.59 6.67 31.12 0.21 -3.39 16 18 C 0.15 5.08 1.69 -11.01 -0.02 5.06 16 19 O -0.54 -21.34 11.27 -131.25 -1.48 -22.81 16 20 C -0.11 -2.90 5.25 -19.86 -0.10 -3.01 16 21 C -0.12 -2.78 9.09 22.27 0.20 -2.57 16 22 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 23 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 24 C -0.12 -2.43 10.05 22.27 0.22 -2.20 16 25 C -0.13 -3.31 9.38 22.27 0.21 -3.10 16 26 C -0.12 -4.38 6.94 31.12 0.22 -4.16 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 3.75 6.42 -2.39 -0.02 3.73 16 34 H 0.08 4.38 5.81 -2.38 -0.01 4.37 16 35 H 0.02 0.89 7.63 -2.39 -0.02 0.87 16 36 H 0.27 12.84 8.31 -92.71 -0.77 12.07 16 37 H 0.10 3.64 7.31 -2.39 -0.02 3.62 16 38 H 0.13 3.34 5.91 -2.39 -0.01 3.32 16 39 H 0.06 2.40 7.44 -2.38 -0.02 2.38 16 40 H 0.37 11.96 7.17 -74.05 -0.53 11.42 16 41 H 0.14 2.69 6.14 -2.91 -0.02 2.67 16 42 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 43 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 44 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 45 H 0.12 2.82 6.37 -2.91 -0.02 2.80 16 46 H 0.05 2.14 8.09 -2.38 -0.02 2.12 16 47 H 0.11 3.29 8.03 -2.39 -0.02 3.27 16 Total: -1.00 -66.41 369.83 4.26 -62.14 By element: Atomic # 1 Polarization: 41.92 SS G_CDS: 0.44 Total: 42.37 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 4.55 Total: -18.76 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -1.49 Total: -69.18 kcal Atomic # 8 Polarization: -56.28 SS G_CDS: -1.27 Total: -57.55 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -66.41 4.26 -62.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181619821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.535 kcal (2) G-P(sol) polarization free energy of solvation -66.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds