Wall clock time and date at job start Tue Mar 31 2020 12:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46949 * 2 1 4 4 C 1.52999 * 109.47054 * 184.69121 * 3 2 1 5 5 N 1.46496 * 109.47349 * 184.86303 * 4 3 2 6 6 C 1.37103 * 120.00464 * 95.67938 * 5 4 3 7 7 H 1.08002 * 120.00296 * 218.83249 * 6 5 4 8 8 C 1.38946 * 119.99319 * 38.55367 * 6 5 4 9 9 N 1.31421 * 119.99491 * 212.14461 * 8 6 5 10 10 Si 1.86795 * 120.00550 * 32.14335 * 8 6 5 11 11 H 1.48501 * 109.46927 * 88.81644 * 10 8 6 12 12 H 1.48500 * 109.47587 * 208.81300 * 10 8 6 13 13 H 1.48503 * 109.47111 * 328.82181 * 10 8 6 14 14 C 1.34782 * 119.99835 * 275.68446 * 5 4 3 15 15 O 1.21286 * 120.00002 * 355.92030 * 14 5 4 16 16 C 1.50704 * 119.99786 * 175.91669 * 14 5 4 17 17 H 1.08992 * 109.47221 * 330.05725 * 16 14 5 18 18 C 1.52995 * 109.46665 * 90.05716 * 16 14 5 19 19 C 1.53002 * 109.46678 * 210.05192 * 16 14 5 20 20 C 1.50704 * 109.46489 * 175.00196 * 19 16 14 21 21 O 1.21248 * 120.00380 * 0.02562 * 20 19 16 22 22 C 1.47174 * 119.99453 * 180.02562 * 20 19 16 23 23 C 1.39845 * 120.17277 * 359.72430 * 22 20 19 24 24 C 1.37887 * 119.82197 * 179.81162 * 23 22 20 25 25 C 1.38399 * 120.17430 * 0.44503 * 24 23 22 26 26 C 1.38403 * 120.34795 * 359.78795 * 25 24 23 27 27 C 1.37885 * 120.17427 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47212 * 60.00565 * 1 2 3 29 29 H 1.09007 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47581 * 300.00378 * 1 2 3 31 31 H 1.08999 * 109.47581 * 239.99622 * 2 1 3 32 32 H 1.09003 * 109.46698 * 119.99323 * 2 1 3 33 33 H 1.08998 * 109.47509 * 64.68836 * 3 2 1 34 34 H 1.09005 * 109.47044 * 304.68701 * 3 2 1 35 35 H 1.09003 * 109.47376 * 64.85790 * 4 3 2 36 36 H 1.09004 * 109.47153 * 304.86119 * 4 3 2 37 37 H 0.97008 * 119.99377 * 180.02562 * 9 8 6 38 38 H 1.08996 * 109.47638 * 66.09937 * 18 16 14 39 39 H 1.09009 * 109.47069 * 186.10195 * 18 16 14 40 40 H 1.08999 * 109.47657 * 306.09445 * 18 16 14 41 41 H 1.08994 * 109.47161 * 295.00287 * 19 16 14 42 42 H 1.08997 * 109.47029 * 55.00406 * 19 16 14 43 43 H 1.07997 * 120.09035 * 0.02562 * 23 22 20 44 44 H 1.08004 * 119.91168 * 180.20343 * 24 23 22 45 45 H 1.08006 * 119.82823 * 179.76392 * 25 24 23 46 46 H 1.08000 * 119.91572 * 179.97438 * 26 25 24 47 47 H 1.07996 * 120.08951 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5654 1.4442 -0.1180 5 7 4.0627 2.8172 -0.0014 6 6 4.4963 3.2887 1.2107 7 1 4.2771 4.3045 1.5048 8 6 5.2129 2.4579 2.0633 9 7 5.0995 2.5972 3.3652 10 14 6.3372 1.1428 1.3591 11 1 7.6905 1.7138 1.1408 12 1 6.4271 0.0067 2.3111 13 1 5.7880 0.6627 0.0656 14 6 4.0940 3.6169 -1.0859 15 8 3.7805 3.1781 -2.1722 16 6 4.5184 5.0564 -0.9485 17 1 4.2545 5.4199 0.0445 18 6 6.0320 5.1627 -1.1449 19 6 3.8062 5.9012 -2.0069 20 6 4.1348 7.3563 -1.7926 21 8 4.8667 7.6851 -0.8835 22 6 3.5673 8.3782 -2.6868 23 6 2.7275 8.0025 -3.7399 24 6 2.1966 8.9662 -4.5710 25 6 2.5004 10.3015 -4.3707 26 6 3.3347 10.6809 -3.3336 27 6 3.8695 9.7296 -2.4909 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.7468 1.9316 0.9290 34 1 1.6096 1.9800 -0.8451 35 1 3.8555 1.0335 -1.0851 36 1 3.9920 0.8344 0.6784 37 1 5.6000 2.0174 3.9604 38 1 6.2843 4.9022 -2.1728 39 1 6.3543 6.1835 -0.9392 40 1 6.5359 4.4782 -0.4625 41 1 4.1383 5.5960 -2.9992 42 1 2.7292 5.7558 -1.9235 43 1 2.4925 6.9606 -3.8998 44 1 1.5452 8.6779 -5.3828 45 1 2.0845 11.0514 -5.0274 46 1 3.5674 11.7249 -3.1839 47 1 4.5207 10.0271 -1.6824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182169819.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:07 Heat of formation + Delta-G solvation = -58.288893 kcal Electronic energy + Delta-G solvation = -26651.662440 eV Core-core repulsion = 22992.215124 eV Total energy + Delta-G solvation = -3659.447316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.15141 -39.00825 -38.07733 -35.63420 -34.02026 -33.41611 -31.89079 -31.63283 -31.08124 -28.68678 -27.54295 -24.91115 -24.28191 -23.63477 -22.63397 -21.60743 -20.63807 -19.52410 -18.74100 -17.54517 -16.53560 -16.38806 -15.62865 -15.43377 -15.12711 -15.01068 -14.69819 -14.46479 -14.11457 -13.93451 -13.66743 -13.55627 -13.32535 -12.98120 -12.76526 -12.59208 -12.47881 -12.13953 -12.04762 -11.81857 -11.74669 -11.32542 -11.27011 -11.19823 -10.98938 -10.74284 -10.61138 -10.57988 -10.45558 -10.14653 -9.90403 -9.73988 -9.45372 -9.15606 -9.09862 -9.06127 -8.43994 -7.71569 -6.53602 -4.01782 0.62115 1.21683 2.49855 3.12025 3.23751 3.31874 3.71418 3.73538 4.01257 4.17215 4.49812 4.67722 4.76259 4.88717 4.93668 5.17118 5.26672 5.27667 5.38108 5.40423 5.52250 5.55770 5.58512 5.73538 5.84202 5.87751 5.93552 6.12594 6.14738 6.18051 6.19588 6.21546 6.25818 6.27254 6.28357 6.31298 6.37575 6.48967 6.54929 6.62283 6.72824 6.80465 6.85247 6.92109 6.97567 7.40080 7.72519 8.10424 8.28224 8.98880 9.39637 9.73707 10.57152 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014155 B = 0.003547 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.681927 B = 7891.943392 C = 9162.185311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.128 4.128 4 C 0.116 3.884 5 N -0.457 5.457 6 C -0.356 4.356 7 H 0.103 0.897 8 C 0.079 3.921 9 N -0.842 5.842 10 Si 0.849 3.151 11 H -0.276 1.276 12 H -0.283 1.283 13 H -0.254 1.254 14 C 0.483 3.517 15 O -0.603 6.603 16 C -0.083 4.083 17 H 0.100 0.900 18 C -0.137 4.137 19 C -0.146 4.146 20 C 0.394 3.606 21 O -0.442 6.442 22 C -0.162 4.162 23 C -0.072 4.072 24 C -0.135 4.135 25 C -0.096 4.096 26 C -0.136 4.136 27 C -0.065 4.065 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.274 0.726 38 H 0.044 0.956 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.136 0.864 44 H 0.127 0.873 45 H 0.124 0.876 46 H 0.126 0.874 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.708 8.596 -11.502 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.167 4.167 4 C -0.008 4.008 5 N -0.176 5.176 6 C -0.483 4.483 7 H 0.120 0.880 8 C -0.130 4.130 9 N -0.476 5.476 10 Si 0.674 3.326 11 H -0.202 1.202 12 H -0.209 1.209 13 H -0.178 1.178 14 C 0.272 3.728 15 O -0.489 6.489 16 C -0.104 4.104 17 H 0.118 0.882 18 C -0.194 4.194 19 C -0.184 4.184 20 C 0.271 3.729 21 O -0.317 6.317 22 C -0.163 4.163 23 C -0.090 4.090 24 C -0.153 4.153 25 C -0.114 4.114 26 C -0.154 4.154 27 C -0.083 4.083 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.114 0.886 43 H 0.154 0.846 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.144 0.856 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.424 8.466 -11.296 15.122 hybrid contribution 0.616 -0.685 -0.084 0.925 sum -4.808 7.781 -11.380 14.600 Atomic orbital electron populations 1.21742 0.96286 1.00819 1.01670 1.21468 0.95452 0.97554 1.01558 1.21894 0.96501 0.95900 1.02358 1.21623 0.93169 0.85274 1.00698 1.43699 1.54868 1.10865 1.08195 1.18932 1.36245 1.01298 0.91787 0.87956 1.25258 0.96337 0.96941 0.94427 1.69947 1.36722 1.38291 1.02619 0.87425 0.82807 0.81697 0.80676 1.20162 1.20910 1.17821 1.20377 0.80414 0.88530 0.83454 1.90510 1.54658 1.76958 1.26749 1.20807 0.96913 0.92615 1.00083 0.88177 1.21685 0.93862 1.02866 1.01011 1.21887 1.02690 0.91567 1.02228 1.22628 0.77666 0.90941 0.81695 1.90499 1.28761 1.84134 1.28260 1.20706 1.01766 0.94932 0.98907 1.21593 0.94115 1.00439 0.92879 1.21162 1.00935 0.93015 1.00160 1.21395 0.96631 0.96297 0.97050 1.21143 0.98659 0.99638 0.95946 1.21478 0.96941 0.91859 0.98060 0.92999 0.93333 0.92810 0.92427 0.92199 0.91318 0.92255 0.92022 0.91586 0.91559 0.93649 0.91347 0.91518 0.87795 0.88577 0.84634 0.85470 0.85822 0.85606 0.84895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.12 -1.94 5.93 -26.73 -0.16 -2.10 16 3 C -0.13 -2.46 5.50 -26.73 -0.15 -2.61 16 4 C 0.12 2.56 3.53 -4.04 -0.01 2.54 16 5 N -0.46 -10.90 2.13 -114.81 -0.25 -11.15 16 6 C -0.36 -9.16 8.93 -14.93 -0.13 -9.30 16 7 H 0.10 2.79 6.55 -52.49 -0.34 2.44 16 8 C 0.08 2.07 5.02 -17.47 -0.09 1.99 16 9 N -0.84 -22.96 13.96 55.50 0.77 -22.18 16 10 Si 0.85 19.91 26.47 -169.99 -4.50 15.42 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.25 -5.87 5.65 56.52 0.32 -5.55 16 14 C 0.48 11.00 6.64 -10.98 -0.07 10.93 16 15 O -0.60 -14.47 15.93 5.55 0.09 -14.39 16 16 C -0.08 -1.65 1.74 -91.77 -0.16 -1.81 16 17 H 0.10 2.15 6.10 -51.93 -0.32 1.83 16 18 C -0.14 -2.62 8.84 37.16 0.33 -2.30 16 19 C -0.15 -2.36 3.30 -27.88 -0.09 -2.45 16 20 C 0.39 6.07 6.86 -30.68 -0.21 5.86 16 21 O -0.44 -7.97 13.97 5.59 0.08 -7.89 16 22 C -0.16 -2.10 5.87 -105.06 -0.62 -2.72 16 23 C -0.07 -0.79 9.47 -39.11 -0.37 -1.16 16 24 C -0.13 -1.23 10.03 -39.65 -0.40 -1.63 16 25 C -0.10 -0.82 10.04 -39.46 -0.40 -1.22 16 26 C -0.14 -1.29 10.03 -39.65 -0.40 -1.68 16 27 C -0.07 -0.77 9.60 -39.11 -0.38 -1.15 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.38 7.52 -51.93 -0.39 0.99 16 36 H 0.07 1.49 4.64 -51.93 -0.24 1.24 16 37 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.26 6.09 -51.92 -0.32 0.94 16 40 H 0.07 1.39 8.11 -51.93 -0.42 0.97 16 41 H 0.10 1.60 7.96 -51.93 -0.41 1.19 16 42 H 0.10 1.47 8.09 -51.93 -0.42 1.05 16 43 H 0.14 1.34 7.05 -52.49 -0.37 0.97 16 44 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 45 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 46 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.13 1.56 7.65 -52.49 -0.40 1.16 16 LS Contribution 380.95 15.07 5.74 5.74 Total: -1.00 -29.77 380.95 -8.50 -38.26 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -7.50 Total: 6.60 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -2.93 Total: -10.42 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.53 Total: -33.33 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: 0.17 Total: -22.27 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.50 Total: 15.42 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.77 -8.50 -38.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182169819.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.026 kcal (2) G-P(sol) polarization free energy of solvation -29.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds