Wall clock time and date at job start Tue Mar 31 2020 12:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46949 * 2 1 4 4 C 1.52999 * 109.47054 * 184.69121 * 3 2 1 5 5 N 1.46496 * 109.47349 * 184.86303 * 4 3 2 6 6 C 1.37103 * 120.00464 * 95.67938 * 5 4 3 7 7 H 1.08002 * 120.00296 * 218.83249 * 6 5 4 8 8 C 1.38946 * 119.99319 * 38.55367 * 6 5 4 9 9 N 1.31421 * 119.99491 * 212.14461 * 8 6 5 10 10 Si 1.86795 * 120.00550 * 32.14335 * 8 6 5 11 11 H 1.48501 * 109.46927 * 88.81644 * 10 8 6 12 12 H 1.48500 * 109.47587 * 208.81300 * 10 8 6 13 13 H 1.48503 * 109.47111 * 328.82181 * 10 8 6 14 14 C 1.34782 * 119.99835 * 275.68446 * 5 4 3 15 15 O 1.21286 * 120.00002 * 355.92030 * 14 5 4 16 16 C 1.50704 * 119.99786 * 175.91669 * 14 5 4 17 17 H 1.08992 * 109.47221 * 330.05725 * 16 14 5 18 18 C 1.52995 * 109.46665 * 90.05716 * 16 14 5 19 19 C 1.53002 * 109.46678 * 210.05192 * 16 14 5 20 20 C 1.50704 * 109.46489 * 175.00196 * 19 16 14 21 21 O 1.21248 * 120.00380 * 0.02562 * 20 19 16 22 22 C 1.47174 * 119.99453 * 180.02562 * 20 19 16 23 23 C 1.39845 * 120.17277 * 359.72430 * 22 20 19 24 24 C 1.37887 * 119.82197 * 179.81162 * 23 22 20 25 25 C 1.38399 * 120.17430 * 0.44503 * 24 23 22 26 26 C 1.38403 * 120.34795 * 359.78795 * 25 24 23 27 27 C 1.37885 * 120.17427 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47212 * 60.00565 * 1 2 3 29 29 H 1.09007 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47581 * 300.00378 * 1 2 3 31 31 H 1.08999 * 109.47581 * 239.99622 * 2 1 3 32 32 H 1.09003 * 109.46698 * 119.99323 * 2 1 3 33 33 H 1.08998 * 109.47509 * 64.68836 * 3 2 1 34 34 H 1.09005 * 109.47044 * 304.68701 * 3 2 1 35 35 H 1.09003 * 109.47376 * 64.85790 * 4 3 2 36 36 H 1.09004 * 109.47153 * 304.86119 * 4 3 2 37 37 H 0.97008 * 119.99377 * 180.02562 * 9 8 6 38 38 H 1.08996 * 109.47638 * 66.09937 * 18 16 14 39 39 H 1.09009 * 109.47069 * 186.10195 * 18 16 14 40 40 H 1.08999 * 109.47657 * 306.09445 * 18 16 14 41 41 H 1.08994 * 109.47161 * 295.00287 * 19 16 14 42 42 H 1.08997 * 109.47029 * 55.00406 * 19 16 14 43 43 H 1.07997 * 120.09035 * 0.02562 * 23 22 20 44 44 H 1.08004 * 119.91168 * 180.20343 * 24 23 22 45 45 H 1.08006 * 119.82823 * 179.76392 * 25 24 23 46 46 H 1.08000 * 119.91572 * 179.97438 * 26 25 24 47 47 H 1.07996 * 120.08951 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5654 1.4442 -0.1180 5 7 4.0627 2.8172 -0.0014 6 6 4.4963 3.2887 1.2107 7 1 4.2771 4.3045 1.5048 8 6 5.2129 2.4579 2.0633 9 7 5.0995 2.5972 3.3652 10 14 6.3372 1.1428 1.3591 11 1 7.6905 1.7138 1.1408 12 1 6.4271 0.0067 2.3111 13 1 5.7880 0.6627 0.0656 14 6 4.0940 3.6169 -1.0859 15 8 3.7805 3.1781 -2.1722 16 6 4.5184 5.0564 -0.9485 17 1 4.2545 5.4199 0.0445 18 6 6.0320 5.1627 -1.1449 19 6 3.8062 5.9012 -2.0069 20 6 4.1348 7.3563 -1.7926 21 8 4.8667 7.6851 -0.8835 22 6 3.5673 8.3782 -2.6868 23 6 2.7275 8.0025 -3.7399 24 6 2.1966 8.9662 -4.5710 25 6 2.5004 10.3015 -4.3707 26 6 3.3347 10.6809 -3.3336 27 6 3.8695 9.7296 -2.4909 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.7468 1.9316 0.9290 34 1 1.6096 1.9800 -0.8451 35 1 3.8555 1.0335 -1.0851 36 1 3.9920 0.8344 0.6784 37 1 5.6000 2.0174 3.9604 38 1 6.2843 4.9022 -2.1728 39 1 6.3543 6.1835 -0.9392 40 1 6.5359 4.4782 -0.4625 41 1 4.1383 5.5960 -2.9992 42 1 2.7292 5.7558 -1.9235 43 1 2.4925 6.9606 -3.8998 44 1 1.5452 8.6779 -5.3828 45 1 2.0845 11.0514 -5.0274 46 1 3.5674 11.7249 -3.1839 47 1 4.5207 10.0271 -1.6824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182169819.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:06 Heat of formation + Delta-G solvation = -72.396617 kcal Electronic energy + Delta-G solvation = -26652.274197 eV Core-core repulsion = 22992.215124 eV Total energy + Delta-G solvation = -3660.059073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.43186 -40.57305 -39.14244 -37.34660 -35.68281 -34.93618 -33.84925 -32.57825 -31.86551 -30.15982 -28.89961 -26.88936 -25.75447 -24.78656 -23.56729 -22.88503 -22.07200 -20.89752 -20.41048 -18.85576 -18.25530 -17.82305 -17.14768 -16.61991 -16.47055 -16.34078 -16.11247 -15.84025 -15.72493 -15.15110 -14.92859 -14.74750 -14.61344 -14.49954 -14.27867 -14.00867 -13.71995 -13.59403 -13.55191 -13.30995 -13.03750 -12.87390 -12.76313 -12.53103 -12.28027 -12.17141 -12.08221 -11.97597 -11.91994 -11.75329 -11.65937 -11.41257 -11.01845 -10.72613 -10.28984 -9.92809 -9.91645 -9.66231 -8.57888 -6.07585 -0.30041 0.44908 1.21648 1.32117 1.40976 1.44826 1.88433 2.19545 2.50877 2.88216 2.88454 3.15152 3.74642 3.93075 3.96232 4.05211 4.06514 4.11790 4.18700 4.22655 4.28333 4.35599 4.40740 4.50534 4.55516 4.63536 4.65866 4.71744 4.74553 4.79746 4.90725 4.93193 4.95789 5.03506 5.07555 5.10009 5.17958 5.25263 5.30091 5.36969 5.41381 5.42973 5.49953 5.51343 5.52105 5.98514 6.08007 6.26992 6.53503 6.97095 7.44558 7.80409 8.56795 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014155 B = 0.003547 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.681927 B = 7891.943392 C = 9162.185311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.118 4.118 4 C 0.110 3.890 5 N -0.468 5.468 6 C -0.353 4.353 7 H 0.076 0.924 8 C 0.046 3.954 9 N -0.878 5.878 10 Si 0.900 3.100 11 H -0.279 1.279 12 H -0.273 1.273 13 H -0.249 1.249 14 C 0.482 3.518 15 O -0.612 6.612 16 C -0.082 4.082 17 H 0.077 0.923 18 C -0.129 4.129 19 C -0.139 4.139 20 C 0.400 3.600 21 O -0.480 6.480 22 C -0.187 4.187 23 C -0.078 4.078 24 C -0.135 4.135 25 C -0.085 4.085 26 C -0.137 4.137 27 C -0.081 4.081 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.280 0.720 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.044 0.956 41 H 0.116 0.884 42 H 0.105 0.895 43 H 0.142 0.858 44 H 0.156 0.844 45 H 0.159 0.841 46 H 0.151 0.849 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.927 8.826 -14.083 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.157 4.157 3 C -0.157 4.157 4 C -0.013 4.013 5 N -0.188 5.188 6 C -0.480 4.480 7 H 0.094 0.906 8 C -0.161 4.161 9 N -0.513 5.513 10 Si 0.723 3.277 11 H -0.205 1.205 12 H -0.198 1.198 13 H -0.173 1.173 14 C 0.272 3.728 15 O -0.499 6.499 16 C -0.103 4.103 17 H 0.095 0.905 18 C -0.186 4.186 19 C -0.176 4.176 20 C 0.280 3.720 21 O -0.358 6.358 22 C -0.188 4.188 23 C -0.096 4.096 24 C -0.152 4.152 25 C -0.103 4.103 26 C -0.154 4.154 27 C -0.100 4.100 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.134 0.866 42 H 0.123 0.877 43 H 0.160 0.840 44 H 0.174 0.826 45 H 0.177 0.823 46 H 0.168 0.832 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.657 8.686 -13.893 17.686 hybrid contribution 0.927 -0.651 0.643 1.302 sum -5.730 8.035 -13.251 16.522 Atomic orbital electron populations 1.21711 0.94215 1.02402 1.01784 1.21465 0.97268 0.94886 1.02115 1.21791 0.94492 0.98296 1.01073 1.21743 0.95031 0.84254 1.00252 1.43818 1.55389 1.11741 1.07822 1.18719 1.36459 1.00390 0.92424 0.90616 1.25728 0.97019 0.98863 0.94470 1.69988 1.37855 1.39888 1.03613 0.86620 0.80727 0.79910 0.80424 1.20507 1.19768 1.17254 1.20810 0.79585 0.89381 0.83022 1.90488 1.54996 1.77458 1.26911 1.20773 0.97761 0.91427 1.00343 0.90469 1.21613 0.93150 1.02656 1.01210 1.21841 1.02720 0.91790 1.01292 1.22751 0.76785 0.91059 0.81417 1.90483 1.30796 1.84479 1.30002 1.20513 1.03818 0.94618 0.99872 1.21755 0.93773 1.01472 0.92570 1.21543 1.00569 0.92923 1.00185 1.21857 0.95053 0.96919 0.96452 1.21456 0.98169 1.00348 0.95464 1.21560 0.97593 0.92076 0.98735 0.92611 0.91014 0.93035 0.91451 0.92063 0.93108 0.92773 0.92157 0.92110 0.91052 0.92219 0.90767 0.93672 0.86594 0.87734 0.84003 0.82616 0.82349 0.83159 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.91 71.98 0.71 -2.85 16 2 C -0.12 -3.61 5.93 30.59 0.18 -3.42 16 3 C -0.12 -4.53 5.50 30.59 0.17 -4.36 16 4 C 0.11 4.87 3.53 86.38 0.30 5.17 16 5 N -0.47 -22.78 2.13 -635.53 -1.36 -24.13 16 6 C -0.35 -18.82 8.93 84.04 0.75 -18.07 16 7 H 0.08 4.39 6.55 -2.91 -0.02 4.37 16 8 C 0.05 2.43 5.02 84.92 0.43 2.86 16 9 N -0.88 -49.02 13.96 21.66 0.30 -48.71 16 10 Si 0.90 41.38 26.47 68.60 1.82 43.20 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 H -0.25 -11.14 5.65 99.48 0.56 -10.57 16 14 C 0.48 22.27 6.64 87.66 0.58 22.85 16 15 O -0.61 -29.17 15.93 -3.05 -0.05 -29.22 16 16 C -0.08 -3.36 1.74 -11.54 -0.02 -3.38 16 17 H 0.08 3.53 6.10 -2.39 -0.01 3.51 16 18 C -0.13 -5.07 8.84 71.98 0.64 -4.44 16 19 C -0.14 -4.53 3.30 29.85 0.10 -4.43 16 20 C 0.40 12.66 6.86 28.04 0.19 12.85 16 21 O -0.48 -18.17 13.97 -2.93 -0.04 -18.21 16 22 C -0.19 -4.79 5.87 -20.15 -0.12 -4.91 16 23 C -0.08 -1.57 9.47 22.58 0.21 -1.35 16 24 C -0.13 -2.01 10.03 22.22 0.22 -1.79 16 25 C -0.09 -1.14 10.04 22.35 0.22 -0.91 16 26 C -0.14 -2.25 10.03 22.23 0.22 -2.03 16 27 C -0.08 -1.89 9.60 22.58 0.22 -1.67 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.06 2.66 7.52 -2.39 -0.02 2.65 16 36 H 0.06 2.72 4.64 -2.39 -0.01 2.71 16 37 H 0.28 14.51 8.31 -92.70 -0.77 13.74 16 38 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.07 2.83 6.09 -2.38 -0.01 2.82 16 40 H 0.04 1.93 8.11 -2.39 -0.02 1.92 16 41 H 0.12 3.50 7.96 -2.39 -0.02 3.48 16 42 H 0.10 3.20 8.09 -2.39 -0.02 3.19 16 43 H 0.14 2.58 7.05 -2.91 -0.02 2.56 16 44 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 45 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 46 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 47 H 0.12 3.00 7.65 -2.91 -0.02 2.97 16 Total: -1.00 -65.55 380.95 6.49 -59.05 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.80 Total: 27.90 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 5.02 Total: -9.88 kcal Atomic # 7 Polarization: -71.79 SS G_CDS: -1.05 Total: -72.85 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -0.09 Total: -47.43 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.82 Total: 43.20 kcal Total: -65.55 6.49 -59.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182169819.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.342 kcal (2) G-P(sol) polarization free energy of solvation -65.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds