Wall clock time and date at job start Tue Mar 31 2020 12:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47294 * 2 1 4 4 C 1.53003 * 109.47459 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47635 * 180.02562 * 4 3 2 6 6 C 1.37102 * 119.99676 * 264.89039 * 5 4 3 7 7 H 1.08004 * 119.99659 * 139.42910 * 6 5 4 8 8 C 1.38953 * 120.00055 * 319.42130 * 6 5 4 9 9 N 1.31413 * 119.99725 * 159.89960 * 8 6 5 10 10 Si 1.86795 * 119.99727 * 339.90244 * 8 6 5 11 11 H 1.48500 * 109.47060 * 94.79518 * 10 8 6 12 12 H 1.48506 * 109.47052 * 214.79169 * 10 8 6 13 13 H 1.48497 * 109.47700 * 334.79024 * 10 8 6 14 14 C 1.34771 * 120.00075 * 84.88655 * 5 4 3 15 15 O 1.21290 * 120.00054 * 5.23270 * 14 5 4 16 16 C 1.50701 * 119.99764 * 185.23630 * 14 5 4 17 17 H 1.09000 * 110.27058 * 329.25110 * 16 14 5 18 18 C 1.54345 * 110.30163 * 91.32636 * 16 14 5 19 19 C 1.54345 * 102.39636 * 145.29097 * 18 16 14 20 20 C 1.51383 * 105.16718 * 333.62677 * 19 18 16 21 21 C 1.38422 * 130.33165 * 197.18572 * 20 19 18 22 22 C 1.38598 * 120.16569 * 180.02562 * 21 20 19 23 23 O 1.35908 * 120.08499 * 179.97438 * 22 21 20 24 24 C 1.42902 * 116.99189 * 179.97438 * 23 22 21 25 25 C 1.38746 * 119.81773 * 0.02562 * 22 21 20 26 26 C 1.37994 * 119.88015 * 0.02562 * 25 22 21 27 27 C 1.38258 * 109.75747 * 17.20814 * 20 19 18 28 28 H 1.08995 * 109.47665 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47185 * 300.00288 * 1 2 3 30 30 H 1.09008 * 109.46782 * 59.99913 * 1 2 3 31 31 H 1.08997 * 109.46934 * 240.00097 * 2 1 3 32 32 H 1.09002 * 109.47218 * 120.00052 * 2 1 3 33 33 H 1.08997 * 109.47051 * 60.00169 * 3 2 1 34 34 H 1.08997 * 109.47460 * 300.00222 * 3 2 1 35 35 H 1.09002 * 109.46859 * 59.99811 * 4 3 2 36 36 H 1.09002 * 109.46773 * 300.00708 * 4 3 2 37 37 H 0.97004 * 119.99701 * 180.02562 * 9 8 6 38 38 H 1.08997 * 110.81641 * 263.51150 * 18 16 14 39 39 H 1.08991 * 110.82117 * 27.06100 * 18 16 14 40 40 H 1.08990 * 110.30466 * 92.55123 * 19 18 16 41 41 H 1.08998 * 110.29993 * 214.70780 * 19 18 16 42 42 H 1.07996 * 119.91334 * 0.03085 * 21 20 19 43 43 H 1.09000 * 109.47221 * 299.99167 * 24 23 22 44 44 H 1.08993 * 109.47411 * 60.00596 * 24 23 22 45 45 H 1.09011 * 109.46575 * 180.02562 * 24 23 22 46 46 H 1.08005 * 120.05598 * 179.97438 * 25 22 21 47 47 H 1.08005 * 119.85341 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.3872 3.4349 -1.1811 7 1 4.1205 4.4683 -1.3470 8 6 5.0634 2.7251 -2.1657 9 7 5.0371 3.1422 -3.4116 10 14 6.0099 1.1780 -1.7183 11 1 5.1496 -0.0112 -1.9441 12 1 7.2248 1.0783 -2.5665 13 1 6.4077 1.2370 -0.2889 14 6 4.1845 3.4933 1.1640 15 8 3.9851 2.9241 2.2164 16 6 4.5733 4.9493 1.1566 17 1 5.2113 5.1654 0.2997 18 6 3.3132 5.8399 1.1243 19 6 3.7419 7.0517 1.9787 20 6 4.8029 6.5187 2.9177 21 6 5.3092 7.0499 4.0915 22 6 6.2939 6.3736 4.7942 23 8 6.7902 6.8969 5.9461 24 6 7.8028 6.1442 6.6170 25 6 6.7724 5.1615 4.3178 26 6 6.2665 4.6351 3.1468 27 6 5.2809 5.3105 2.4453 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9337 0.9285 -0.8891 36 1 3.9330 0.9287 0.8908 37 1 5.5089 2.6464 -4.0991 38 1 3.0821 6.1473 0.1044 39 1 2.4647 5.3272 1.5773 40 1 4.1573 7.8341 1.3437 41 1 2.8930 7.4342 2.5453 42 1 4.9357 7.9936 4.4606 43 1 7.4088 5.1643 6.8864 44 1 8.6617 6.0217 5.9572 45 1 8.1101 6.6725 7.5197 46 1 7.5400 4.6314 4.8621 47 1 6.6390 3.6913 2.7766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182445924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:43 Heat of formation + Delta-G solvation = -54.168733 kcal Electronic energy + Delta-G solvation = -27173.767329 eV Core-core repulsion = 23514.498676 eV Total energy + Delta-G solvation = -3659.268653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.40100 -39.14512 -37.83730 -35.49329 -34.42690 -33.98507 -31.89632 -31.20807 -29.07328 -28.23315 -27.83236 -26.32338 -24.78332 -23.39081 -22.49058 -20.99135 -20.68515 -20.48725 -18.84613 -17.49530 -16.97787 -16.44045 -15.98780 -15.66370 -15.50556 -14.89345 -14.79336 -14.43786 -14.21317 -14.02463 -13.42028 -13.31548 -13.09024 -13.01011 -12.73822 -12.48009 -12.41780 -12.24435 -11.89415 -11.77920 -11.57717 -11.49667 -11.27688 -11.15713 -11.00732 -10.85305 -10.69143 -10.59020 -10.38685 -10.37342 -10.19794 -10.00776 -9.79329 -9.20410 -8.59184 -8.45901 -7.80660 -7.64946 -6.51145 -4.13209 1.61899 1.75861 3.02730 3.19237 3.28087 3.32215 3.68384 4.00467 4.10322 4.41231 4.79133 4.91061 4.97319 5.00694 5.11023 5.18531 5.33777 5.35221 5.36480 5.39782 5.50438 5.51548 5.62243 5.67903 5.76504 5.81058 5.94881 6.10543 6.10962 6.14085 6.18502 6.19949 6.22545 6.27115 6.32624 6.41709 6.48525 6.49867 6.57253 6.66171 6.72110 6.79141 6.89883 6.99271 7.05432 7.38364 7.57015 8.06206 8.22211 8.93836 9.34234 9.68568 10.59195 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013537 B = 0.003975 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.936136 B = 7043.074045 C = 7522.443649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.103 3.897 5 N -0.466 5.466 6 C -0.345 4.345 7 H 0.105 0.895 8 C 0.070 3.930 9 N -0.860 5.860 10 Si 0.872 3.128 11 H -0.274 1.274 12 H -0.288 1.288 13 H -0.262 1.262 14 C 0.491 3.509 15 O -0.590 6.590 16 C -0.058 4.058 17 H 0.116 0.884 18 C -0.100 4.100 19 C -0.077 4.077 20 C -0.061 4.061 21 C -0.144 4.144 22 C 0.115 3.885 23 O -0.322 6.322 24 C 0.030 3.970 25 C -0.208 4.208 26 C -0.048 4.048 27 C -0.089 4.089 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.275 0.725 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.124 0.876 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.095 0.905 46 H 0.124 0.876 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.107 3.453 10.488 11.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.164 4.164 4 C -0.020 4.020 5 N -0.186 5.186 6 C -0.472 4.472 7 H 0.122 0.878 8 C -0.137 4.137 9 N -0.495 5.495 10 Si 0.699 3.301 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.186 1.186 14 C 0.281 3.719 15 O -0.474 6.474 16 C -0.078 4.078 17 H 0.134 0.866 18 C -0.138 4.138 19 C -0.114 4.114 20 C -0.061 4.061 21 C -0.162 4.162 22 C 0.071 3.929 23 O -0.236 6.236 24 C -0.066 4.066 25 C -0.227 4.227 26 C -0.066 4.066 27 C -0.090 4.090 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.142 0.858 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.114 0.886 46 H 0.142 0.858 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.021 3.312 10.872 11.366 hybrid contribution 0.836 -1.200 -0.088 1.465 sum 0.857 2.112 10.785 11.023 Atomic orbital electron populations 1.21740 0.96177 1.00875 1.01725 1.21479 0.95567 0.97519 1.01581 1.21848 0.96139 0.95968 1.02409 1.21603 0.93880 0.85526 1.00977 1.43750 1.57208 1.11542 1.06115 1.19047 1.37622 0.99516 0.91006 0.87801 1.25342 0.95767 0.97923 0.94680 1.69748 1.39472 1.40385 0.99864 0.86990 0.80074 0.83215 0.79772 1.20072 1.21446 1.18580 1.20217 0.79779 0.88577 0.83374 1.90549 1.55361 1.70030 1.31419 1.20655 0.97300 0.93757 0.96131 0.86636 1.22160 0.96699 0.94398 1.00571 1.21056 0.96168 0.98271 0.95914 1.20327 0.96861 0.95114 0.93836 1.19615 0.99288 1.01492 0.95834 1.18714 0.94805 0.92862 0.86531 1.86008 1.54110 1.48167 1.35292 1.22986 0.89973 0.96828 0.96792 1.21011 1.04914 0.97091 0.99690 1.20383 0.94572 0.98469 0.93159 1.20191 0.97018 0.95116 0.96663 0.93295 0.92938 0.92774 0.92270 0.92343 0.92095 0.91310 0.91527 0.91836 0.91497 0.89706 0.91046 0.89867 0.90723 0.85824 0.92793 0.92813 0.88646 0.85815 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.95 5.93 -26.73 -0.16 -2.11 16 3 C -0.13 -2.38 5.50 -26.73 -0.15 -2.53 16 4 C 0.10 2.26 4.00 -4.04 -0.02 2.24 16 5 N -0.47 -10.92 2.13 -114.81 -0.24 -11.17 16 6 C -0.34 -8.60 8.61 -14.93 -0.13 -8.73 16 7 H 0.10 2.66 7.30 -52.48 -0.38 2.28 16 8 C 0.07 1.81 5.29 -17.47 -0.09 1.71 16 9 N -0.86 -23.04 13.96 55.50 0.77 -22.26 16 10 Si 0.87 20.24 25.06 -169.99 -4.26 15.98 16 11 H -0.27 -6.13 6.70 56.52 0.38 -5.75 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 14 C 0.49 11.22 6.48 -10.99 -0.07 11.15 16 15 O -0.59 -14.61 15.60 5.55 0.09 -14.53 16 16 C -0.06 -1.14 2.49 -91.88 -0.23 -1.36 16 17 H 0.12 2.36 6.77 -51.93 -0.35 2.01 16 18 C -0.10 -1.67 6.58 -25.32 -0.17 -1.84 16 19 C -0.08 -1.10 6.77 -26.84 -0.18 -1.28 16 20 C -0.06 -1.01 6.13 -104.21 -0.64 -1.65 16 21 C -0.14 -2.23 9.98 -39.38 -0.39 -2.62 16 22 C 0.12 1.79 6.68 -39.26 -0.26 1.53 16 23 O -0.32 -4.43 10.50 -19.45 -0.20 -4.64 16 24 C 0.03 0.28 9.81 101.05 0.99 1.28 16 25 C -0.21 -3.29 9.04 -39.48 -0.36 -3.65 16 26 C -0.05 -0.87 9.35 -39.56 -0.37 -1.24 16 27 C -0.09 -1.68 5.20 -104.16 -0.54 -2.22 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.07 1.50 3.77 -51.93 -0.20 1.30 16 36 H 0.06 1.41 7.51 -51.93 -0.39 1.02 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.07 1.24 7.91 -51.93 -0.41 0.83 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 43 H 0.05 0.49 7.67 -51.93 -0.40 0.10 16 44 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 45 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 46 H 0.12 1.62 6.31 -52.48 -0.33 1.29 16 47 H 0.12 2.26 8.06 -52.48 -0.42 1.83 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -29.40 374.81 -8.11 -37.51 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.51 Total: 6.38 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -2.39 Total: -12.93 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.53 Total: -33.43 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.12 Total: -19.16 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.26 Total: 15.98 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.40 -8.11 -37.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182445924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.658 kcal (2) G-P(sol) polarization free energy of solvation -29.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds