Wall clock time and date at job start Tue Mar 31 2020 12:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47294 * 2 1 4 4 C 1.53003 * 109.47459 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47635 * 180.02562 * 4 3 2 6 6 C 1.37102 * 119.99676 * 264.89039 * 5 4 3 7 7 H 1.08004 * 119.99659 * 139.42910 * 6 5 4 8 8 C 1.38953 * 120.00055 * 319.42130 * 6 5 4 9 9 N 1.31413 * 119.99725 * 159.89960 * 8 6 5 10 10 Si 1.86795 * 119.99727 * 339.90244 * 8 6 5 11 11 H 1.48500 * 109.47060 * 94.79518 * 10 8 6 12 12 H 1.48506 * 109.47052 * 214.79169 * 10 8 6 13 13 H 1.48497 * 109.47700 * 334.79024 * 10 8 6 14 14 C 1.34771 * 120.00075 * 84.88655 * 5 4 3 15 15 O 1.21290 * 120.00054 * 5.23270 * 14 5 4 16 16 C 1.50701 * 119.99764 * 185.23630 * 14 5 4 17 17 H 1.09000 * 110.27058 * 329.25110 * 16 14 5 18 18 C 1.54345 * 110.30163 * 91.32636 * 16 14 5 19 19 C 1.54345 * 102.39636 * 145.29097 * 18 16 14 20 20 C 1.51383 * 105.16718 * 333.62677 * 19 18 16 21 21 C 1.38422 * 130.33165 * 197.18572 * 20 19 18 22 22 C 1.38598 * 120.16569 * 180.02562 * 21 20 19 23 23 O 1.35908 * 120.08499 * 179.97438 * 22 21 20 24 24 C 1.42902 * 116.99189 * 179.97438 * 23 22 21 25 25 C 1.38746 * 119.81773 * 0.02562 * 22 21 20 26 26 C 1.37994 * 119.88015 * 0.02562 * 25 22 21 27 27 C 1.38258 * 109.75747 * 17.20814 * 20 19 18 28 28 H 1.08995 * 109.47665 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47185 * 300.00288 * 1 2 3 30 30 H 1.09008 * 109.46782 * 59.99913 * 1 2 3 31 31 H 1.08997 * 109.46934 * 240.00097 * 2 1 3 32 32 H 1.09002 * 109.47218 * 120.00052 * 2 1 3 33 33 H 1.08997 * 109.47051 * 60.00169 * 3 2 1 34 34 H 1.08997 * 109.47460 * 300.00222 * 3 2 1 35 35 H 1.09002 * 109.46859 * 59.99811 * 4 3 2 36 36 H 1.09002 * 109.46773 * 300.00708 * 4 3 2 37 37 H 0.97004 * 119.99701 * 180.02562 * 9 8 6 38 38 H 1.08997 * 110.81641 * 263.51150 * 18 16 14 39 39 H 1.08991 * 110.82117 * 27.06100 * 18 16 14 40 40 H 1.08990 * 110.30466 * 92.55123 * 19 18 16 41 41 H 1.08998 * 110.29993 * 214.70780 * 19 18 16 42 42 H 1.07996 * 119.91334 * 0.03085 * 21 20 19 43 43 H 1.09000 * 109.47221 * 299.99167 * 24 23 22 44 44 H 1.08993 * 109.47411 * 60.00596 * 24 23 22 45 45 H 1.09011 * 109.46575 * 180.02562 * 24 23 22 46 46 H 1.08005 * 120.05598 * 179.97438 * 25 22 21 47 47 H 1.08005 * 119.85341 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.3872 3.4349 -1.1811 7 1 4.1205 4.4683 -1.3470 8 6 5.0634 2.7251 -2.1657 9 7 5.0371 3.1422 -3.4116 10 14 6.0099 1.1780 -1.7183 11 1 5.1496 -0.0112 -1.9441 12 1 7.2248 1.0783 -2.5665 13 1 6.4077 1.2370 -0.2889 14 6 4.1845 3.4933 1.1640 15 8 3.9851 2.9241 2.2164 16 6 4.5733 4.9493 1.1566 17 1 5.2113 5.1654 0.2997 18 6 3.3132 5.8399 1.1243 19 6 3.7419 7.0517 1.9787 20 6 4.8029 6.5187 2.9177 21 6 5.3092 7.0499 4.0915 22 6 6.2939 6.3736 4.7942 23 8 6.7902 6.8969 5.9461 24 6 7.8028 6.1442 6.6170 25 6 6.7724 5.1615 4.3178 26 6 6.2665 4.6351 3.1468 27 6 5.2809 5.3105 2.4453 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9337 0.9285 -0.8891 36 1 3.9330 0.9287 0.8908 37 1 5.5089 2.6464 -4.0991 38 1 3.0821 6.1473 0.1044 39 1 2.4647 5.3272 1.5773 40 1 4.1573 7.8341 1.3437 41 1 2.8930 7.4342 2.5453 42 1 4.9357 7.9936 4.4606 43 1 7.4088 5.1643 6.8864 44 1 8.6617 6.0217 5.9572 45 1 8.1101 6.6725 7.5197 46 1 7.5400 4.6314 4.8621 47 1 6.6390 3.6913 2.7766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182445924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:42 Heat of formation + Delta-G solvation = -68.959427 kcal Electronic energy + Delta-G solvation = -27174.408702 eV Core-core repulsion = 23514.498676 eV Total energy + Delta-G solvation = -3659.910025 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.76840 -40.61470 -39.19978 -37.19497 -35.83578 -35.47809 -33.82753 -32.50343 -30.48742 -29.49418 -29.01960 -27.48450 -26.67644 -24.86636 -23.76876 -22.41091 -22.12513 -21.68868 -20.68176 -18.82748 -18.49734 -18.20408 -17.30605 -17.11841 -16.63545 -16.42020 -16.23553 -15.97628 -15.65689 -15.50499 -14.95719 -14.69165 -14.62836 -14.22737 -14.19968 -14.02647 -13.80243 -13.56225 -13.36596 -13.18798 -12.91699 -12.86306 -12.68125 -12.58928 -12.36840 -12.18118 -12.13942 -12.09354 -11.92637 -11.81614 -11.59964 -11.48801 -11.42789 -11.08573 -10.40017 -9.74546 -9.67063 -8.97234 -8.51738 -6.14536 0.36444 0.45437 1.14774 1.27769 1.38317 1.87181 2.15871 2.32321 2.57131 2.78915 2.98123 3.52677 3.65388 3.89930 3.91500 4.01240 4.07930 4.14726 4.22827 4.29789 4.31812 4.34301 4.39451 4.42133 4.48380 4.53216 4.61274 4.71485 4.74535 4.77050 4.84489 4.88261 4.91008 4.95009 5.03393 5.04812 5.19731 5.20900 5.25509 5.31230 5.33312 5.40219 5.42865 5.51151 5.73494 5.75308 6.08521 6.27053 6.45127 6.96186 7.42687 7.79588 8.61783 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013537 B = 0.003975 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.936136 B = 7043.074045 C = 7522.443649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 C -0.115 4.115 4 C 0.097 3.903 5 N -0.476 5.476 6 C -0.338 4.338 7 H 0.091 0.909 8 C 0.038 3.962 9 N -0.892 5.892 10 Si 0.914 3.086 11 H -0.258 1.258 12 H -0.283 1.283 13 H -0.276 1.276 14 C 0.488 3.512 15 O -0.611 6.611 16 C -0.058 4.058 17 H 0.100 0.900 18 C -0.097 4.097 19 C -0.068 4.068 20 C -0.061 4.061 21 C -0.147 4.147 22 C 0.119 3.881 23 O -0.328 6.328 24 C 0.018 3.982 25 C -0.209 4.209 26 C -0.070 4.070 27 C -0.123 4.123 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.279 0.721 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.149 0.851 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.125 0.875 46 H 0.147 0.853 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.194 4.045 12.056 12.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.153 4.153 4 C -0.025 4.025 5 N -0.197 5.197 6 C -0.465 4.465 7 H 0.108 0.892 8 C -0.167 4.167 9 N -0.529 5.529 10 Si 0.741 3.259 11 H -0.184 1.184 12 H -0.209 1.209 13 H -0.201 1.201 14 C 0.279 3.721 15 O -0.497 6.497 16 C -0.078 4.078 17 H 0.117 0.883 18 C -0.135 4.135 19 C -0.104 4.104 20 C -0.061 4.061 21 C -0.165 4.165 22 C 0.074 3.926 23 O -0.242 6.242 24 C -0.076 4.076 25 C -0.228 4.228 26 C -0.088 4.088 27 C -0.124 4.124 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.167 0.833 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.143 0.857 46 H 0.165 0.835 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.280 3.895 12.441 13.040 hybrid contribution 0.993 -1.351 -0.436 1.732 sum 0.713 2.545 12.005 12.292 Atomic orbital electron populations 1.21707 0.94036 1.02448 1.01887 1.21482 0.97443 0.94966 1.02021 1.21744 0.93987 0.98259 1.01327 1.21712 0.95838 0.84701 1.00279 1.43890 1.57690 1.12172 1.05901 1.18965 1.37154 0.99121 0.91271 0.89151 1.25754 0.96331 1.00041 0.94572 1.69793 1.40728 1.41820 1.00532 0.86317 0.79486 0.81622 0.78500 1.18369 1.20940 1.20131 1.20800 0.78730 0.89846 0.82742 1.90514 1.56263 1.70883 1.32035 1.20655 0.98615 0.92051 0.96519 0.88261 1.22153 0.94845 0.94920 1.01548 1.21078 0.96508 0.97305 0.95530 1.20573 0.96975 0.94209 0.94313 1.19922 0.99005 1.02331 0.95246 1.18859 0.94376 0.92389 0.86978 1.86015 1.54948 1.48813 1.34409 1.23335 0.89234 0.97319 0.97715 1.21189 1.05207 0.97514 0.98841 1.20418 0.95514 0.98289 0.94620 1.20262 0.98343 0.96871 0.96920 0.91016 0.92765 0.92679 0.91947 0.91794 0.93082 0.92316 0.92033 0.92476 0.91093 0.89113 0.92080 0.87686 0.88080 0.83293 0.92357 0.91974 0.85686 0.83546 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.91 71.98 0.71 -2.86 16 2 C -0.12 -3.70 5.93 30.59 0.18 -3.52 16 3 C -0.11 -4.40 5.50 30.59 0.17 -4.23 16 4 C 0.10 4.34 4.00 86.38 0.35 4.68 16 5 N -0.48 -22.98 2.13 -635.54 -1.36 -24.33 16 6 C -0.34 -17.34 8.61 84.04 0.72 -16.61 16 7 H 0.09 4.81 7.30 -2.91 -0.02 4.79 16 8 C 0.04 1.97 5.29 84.93 0.45 2.42 16 9 N -0.89 -48.49 13.96 21.66 0.30 -48.19 16 10 Si 0.91 42.11 25.06 68.60 1.72 43.83 16 11 H -0.26 -11.14 6.70 99.48 0.67 -10.47 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 14 C 0.49 23.07 6.48 87.66 0.57 23.64 16 15 O -0.61 -31.25 15.60 -3.06 -0.05 -31.29 16 16 C -0.06 -2.34 2.49 -11.61 -0.03 -2.36 16 17 H 0.10 4.26 6.77 -2.39 -0.02 4.25 16 18 C -0.10 -3.21 6.58 31.51 0.21 -3.01 16 19 C -0.07 -1.79 6.77 30.52 0.21 -1.58 16 20 C -0.06 -1.92 6.13 -19.60 -0.12 -2.04 16 21 C -0.15 -4.23 9.98 22.40 0.22 -4.01 16 22 C 0.12 3.48 6.68 22.48 0.15 3.63 16 23 O -0.33 -8.15 10.50 -92.52 -0.97 -9.12 16 24 C 0.02 0.30 9.81 113.37 1.11 1.41 16 25 C -0.21 -6.44 9.04 22.33 0.20 -6.24 16 26 C -0.07 -2.63 9.35 22.29 0.21 -2.42 16 27 C -0.12 -4.70 5.20 -19.57 -0.10 -4.80 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.35 8.14 -2.38 -0.02 1.34 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.06 2.78 3.77 -2.39 -0.01 2.77 16 36 H 0.06 2.58 7.51 -2.39 -0.02 2.56 16 37 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 38 H 0.09 2.85 8.14 -2.39 -0.02 2.84 16 39 H 0.06 2.13 7.91 -2.39 -0.02 2.11 16 40 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 43 H 0.06 0.92 7.67 -2.39 -0.02 0.90 16 44 H 0.06 0.93 7.66 -2.39 -0.02 0.91 16 45 H 0.13 1.31 8.14 -2.38 -0.02 1.29 16 46 H 0.15 3.65 6.31 -2.91 -0.02 3.64 16 47 H 0.10 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -64.25 374.81 5.77 -58.48 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.91 Total: 28.51 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: 5.21 Total: -17.89 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.05 Total: -72.52 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -1.02 Total: -40.42 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.72 Total: 43.83 kcal Total: -64.25 5.77 -58.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182445924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.476 kcal (2) G-P(sol) polarization free energy of solvation -64.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds