Wall clock time and date at job start Tue Mar 31 2020 12:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47088 * 2 1 4 4 C 1.53001 * 109.47324 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46832 * 179.97438 * 4 3 2 6 6 C 1.37103 * 119.99722 * 275.18467 * 5 4 3 7 7 H 1.08003 * 120.00116 * 38.33596 * 6 5 4 8 8 C 1.38954 * 119.99862 * 218.32531 * 6 5 4 9 9 N 1.31412 * 119.99759 * 8.72369 * 8 6 5 10 10 Si 1.86790 * 120.00109 * 188.72000 * 8 6 5 11 11 H 1.48503 * 109.47457 * 89.99953 * 10 8 6 12 12 H 1.48500 * 109.47347 * 210.00349 * 10 8 6 13 13 H 1.48504 * 109.47178 * 330.00497 * 10 8 6 14 14 C 1.34773 * 119.99882 * 95.18910 * 5 4 3 15 15 O 1.21287 * 119.99912 * 186.46477 * 14 5 4 16 16 C 1.50698 * 120.00081 * 6.46991 * 14 5 4 17 17 H 1.09004 * 110.34304 * 319.51280 * 16 14 5 18 18 C 1.54338 * 110.30310 * 197.38666 * 16 14 5 19 19 C 1.54345 * 102.39575 * 267.44570 * 18 16 14 20 20 C 1.51380 * 105.16883 * 333.62796 * 19 18 16 21 21 C 1.38412 * 130.33533 * 197.24490 * 20 19 18 22 22 C 1.38604 * 120.17027 * 179.97438 * 21 20 19 23 23 O 1.35900 * 120.08936 * 180.02562 * 22 21 20 24 24 C 1.42901 * 116.99718 * 179.97438 * 23 22 21 25 25 C 1.38745 * 119.81414 * 0.06156 * 22 21 20 26 26 C 1.38006 * 119.87960 * 359.89930 * 25 22 21 27 27 C 1.38259 * 109.75647 * 17.20331 * 20 19 18 28 28 H 1.09000 * 109.46632 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47057 * 300.00024 * 1 2 3 30 30 H 1.09000 * 109.47117 * 60.00138 * 1 2 3 31 31 H 1.09002 * 109.47885 * 240.00155 * 2 1 3 32 32 H 1.08996 * 109.47744 * 119.99494 * 2 1 3 33 33 H 1.09000 * 109.47342 * 59.99600 * 3 2 1 34 34 H 1.09000 * 109.47029 * 299.99916 * 3 2 1 35 35 H 1.09002 * 109.46880 * 60.00396 * 4 3 2 36 36 H 1.08993 * 109.47537 * 300.00121 * 4 3 2 37 37 H 0.97004 * 119.99492 * 184.77457 * 9 8 6 38 38 H 1.09000 * 110.82514 * 149.21768 * 18 16 14 39 39 H 1.09007 * 110.99148 * 25.74946 * 18 16 14 40 40 H 1.08997 * 110.30207 * 214.69997 * 19 18 16 41 41 H 1.08997 * 110.38471 * 92.59157 * 19 18 16 42 42 H 1.08001 * 119.91534 * 359.97438 * 21 20 19 43 43 H 1.09003 * 109.46939 * 59.99732 * 24 23 22 44 44 H 1.09002 * 109.47067 * 179.97438 * 24 23 22 45 45 H 1.08991 * 109.47166 * 299.99933 * 24 23 22 46 46 H 1.07999 * 120.06123 * 179.97438 * 25 22 21 47 47 H 1.08003 * 119.84894 * 180.34644 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.1859 3.5052 -1.1828 7 1 3.4487 3.3779 -1.9617 8 6 5.2639 4.3597 -1.3795 9 7 6.2481 4.3868 -0.5091 10 14 5.3141 5.4697 -2.8810 11 1 4.6642 6.7659 -2.5604 12 1 6.7263 5.7077 -3.2737 13 1 4.5915 4.8179 -4.0028 14 6 4.3818 3.4247 1.1622 15 8 4.6733 4.6020 1.1757 16 6 4.3816 2.6338 2.4450 17 1 3.5284 1.9560 2.4721 18 6 4.3490 3.5846 3.6603 19 6 5.8481 3.7644 3.9805 20 6 6.5166 2.5073 3.4662 21 6 7.7626 1.9753 3.7493 22 6 8.1677 0.7929 3.1501 23 8 9.3912 0.2717 3.4296 24 6 9.7409 -0.9497 2.7754 25 6 7.3208 0.1435 2.2634 26 6 6.0788 0.6761 1.9838 27 6 5.6738 1.8575 2.5837 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 3.9337 0.9287 -0.8892 36 1 3.9330 0.9290 0.8908 37 1 6.9662 5.0313 -0.6090 38 1 3.8263 3.1241 4.4986 39 1 3.8917 4.5386 3.3976 40 1 5.9964 3.8587 5.0562 41 1 6.2437 4.6405 3.4666 42 1 8.4209 2.4827 4.4390 43 1 9.7256 -0.8009 1.6957 44 1 10.7402 -1.2549 3.0857 45 1 9.0237 -1.7247 3.0455 46 1 7.6326 -0.7777 1.7939 47 1 5.4177 0.1672 1.2979 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182445925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:47 Heat of formation + Delta-G solvation = -40.218202 kcal Electronic energy + Delta-G solvation = -27887.463876 eV Core-core repulsion = 24228.800164 eV Total energy + Delta-G solvation = -3658.663712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.26968 -38.87449 -37.32407 -35.47168 -34.20976 -33.12412 -31.82435 -30.87815 -28.19573 -28.11853 -27.92426 -26.31474 -24.58924 -22.99412 -22.26522 -21.15209 -20.74167 -20.31846 -18.55139 -17.32073 -16.71690 -16.02290 -15.75854 -15.53825 -15.23047 -14.86952 -14.58468 -14.17034 -13.89755 -13.72776 -13.58554 -13.12778 -12.92879 -12.72726 -12.44146 -12.35296 -12.21828 -11.82136 -11.58613 -11.45963 -11.34273 -11.18563 -10.90546 -10.89049 -10.80299 -10.77568 -10.60847 -10.53903 -10.33141 -10.19532 -10.14514 -10.03092 -9.90261 -8.76830 -8.32379 -8.12890 -7.40111 -6.91059 -5.88767 -3.75204 1.79551 1.88501 3.36209 3.41280 3.42978 3.45840 4.11601 4.38201 4.48769 4.89030 5.03029 5.11801 5.19027 5.21911 5.24892 5.29081 5.38039 5.40851 5.44145 5.49596 5.52772 5.63227 5.70634 5.79107 5.84693 5.91424 6.00008 6.03769 6.12164 6.15492 6.16654 6.27564 6.34111 6.37294 6.41360 6.47800 6.49182 6.60507 6.68990 6.73512 6.79624 6.89653 6.91421 7.13662 7.20758 7.68452 7.71575 8.34743 9.19049 9.32487 9.80046 10.49410 11.11042 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009262 B = 0.005472 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.360524 B = 5116.151892 C = 6278.220199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.134 4.134 4 C 0.102 3.898 5 N -0.457 5.457 6 C -0.334 4.334 7 H 0.076 0.924 8 C 0.053 3.947 9 N -0.816 5.816 10 Si 0.908 3.092 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.275 1.275 14 C 0.483 3.517 15 O -0.516 6.516 16 C -0.066 4.066 17 H 0.079 0.921 18 C -0.099 4.099 19 C -0.074 4.074 20 C -0.045 4.045 21 C -0.143 4.143 22 C 0.117 3.883 23 O -0.322 6.322 24 C 0.030 3.970 25 C -0.208 4.208 26 C -0.064 4.064 27 C -0.094 4.094 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.260 0.740 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.122 0.878 43 H 0.054 0.946 44 H 0.094 0.906 45 H 0.052 0.948 46 H 0.123 0.877 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.401 -11.202 7.233 13.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.173 4.173 4 C -0.023 4.023 5 N -0.179 5.179 6 C -0.461 4.461 7 H 0.094 0.906 8 C -0.157 4.157 9 N -0.451 5.451 10 Si 0.736 3.264 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.200 1.200 14 C 0.269 3.731 15 O -0.391 6.391 16 C -0.088 4.088 17 H 0.097 0.903 18 C -0.137 4.137 19 C -0.111 4.111 20 C -0.045 4.045 21 C -0.162 4.162 22 C 0.072 3.928 23 O -0.236 6.236 24 C -0.065 4.065 25 C -0.227 4.227 26 C -0.082 4.082 27 C -0.095 4.095 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.140 0.860 43 H 0.072 0.928 44 H 0.112 0.888 45 H 0.070 0.930 46 H 0.141 0.859 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.875 -10.453 7.370 12.820 hybrid contribution 0.174 0.176 -1.144 1.171 sum -0.700 -10.277 6.226 12.036 Atomic orbital electron populations 1.21757 0.96387 1.00852 1.01732 1.21489 0.95396 0.97576 1.01578 1.22045 0.97445 0.95502 1.02325 1.21625 0.92658 0.87020 1.00963 1.43187 1.60490 1.08905 1.05317 1.18999 1.07130 1.26986 0.92995 0.90617 1.25166 0.94272 0.99097 0.97193 1.69965 1.08530 1.32406 1.34159 0.86258 0.76973 0.81095 0.82102 1.20722 1.21445 1.20039 1.19354 0.83425 0.87348 0.82946 1.90482 1.47904 1.16113 1.84625 1.20829 0.94840 0.96446 0.96704 0.90252 1.22108 0.95833 1.00172 0.95611 1.21006 0.94885 0.95513 0.99685 1.20352 0.92666 0.95577 0.95893 1.19634 0.96596 0.95538 1.04421 1.18690 0.84443 0.93811 0.95807 1.86005 1.31784 1.39484 1.66359 1.22968 1.01017 0.84881 0.97646 1.20944 0.96015 1.02541 1.03210 1.20458 0.95320 0.94845 0.97529 1.20175 0.96922 0.94712 0.97711 0.93328 0.92947 0.92884 0.92198 0.92393 0.92494 0.91683 0.92035 0.92199 0.92993 0.91810 0.89569 0.91566 0.89033 0.86018 0.92752 0.88757 0.92957 0.85931 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.32 16 2 C -0.12 -1.56 5.93 -26.73 -0.16 -1.72 16 3 C -0.13 -2.20 5.51 -26.73 -0.15 -2.35 16 4 C 0.10 1.97 4.97 -4.04 -0.02 1.94 16 5 N -0.46 -11.28 2.58 -114.81 -0.30 -11.57 16 6 C -0.33 -9.14 9.33 -14.93 -0.14 -9.28 16 7 H 0.08 2.01 7.85 -52.48 -0.41 1.59 16 8 C 0.05 1.49 4.71 -17.47 -0.08 1.41 16 9 N -0.82 -24.48 10.65 55.50 0.59 -23.89 16 10 Si 0.91 22.11 29.56 -169.99 -5.03 17.08 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 C 0.48 12.12 5.96 -10.99 -0.07 12.05 16 15 O -0.52 -15.01 12.87 5.55 0.07 -14.94 16 16 C -0.07 -1.32 2.30 -91.88 -0.21 -1.54 16 17 H 0.08 1.41 6.91 -51.93 -0.36 1.05 16 18 C -0.10 -1.77 6.27 -25.33 -0.16 -1.93 16 19 C -0.07 -1.32 6.67 -26.84 -0.18 -1.50 16 20 C -0.04 -0.85 6.13 -104.22 -0.64 -1.49 16 21 C -0.14 -2.58 9.98 -39.38 -0.39 -2.97 16 22 C 0.12 2.02 6.68 -39.26 -0.26 1.76 16 23 O -0.32 -4.97 10.50 -19.43 -0.20 -5.17 16 24 C 0.03 0.33 9.81 101.05 0.99 1.32 16 25 C -0.21 -3.48 9.04 -39.48 -0.36 -3.84 16 26 C -0.06 -1.16 9.49 -39.55 -0.38 -1.53 16 27 C -0.09 -1.86 5.35 -104.16 -0.56 -2.42 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 36 H 0.06 1.05 3.39 -51.93 -0.18 0.88 16 37 H 0.26 7.63 8.32 -40.82 -0.34 7.29 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.09 1.65 7.32 -51.93 -0.38 1.27 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 42 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 43 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 46 H 0.12 1.69 6.31 -52.49 -0.33 1.36 16 47 H 0.12 2.04 5.96 -52.48 -0.31 1.72 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -33.62 372.62 -9.03 -42.65 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -7.39 Total: 3.64 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -2.39 Total: -13.41 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.30 Total: -35.46 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.13 Total: -20.11 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.62 -9.03 -42.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182445925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.429 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds