Wall clock time and date at job start Tue Mar 31 2020 12:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47088 * 2 1 4 4 C 1.53001 * 109.47324 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46832 * 179.97438 * 4 3 2 6 6 C 1.37103 * 119.99722 * 275.18467 * 5 4 3 7 7 H 1.08003 * 120.00116 * 38.33596 * 6 5 4 8 8 C 1.38954 * 119.99862 * 218.32531 * 6 5 4 9 9 N 1.31412 * 119.99759 * 8.72369 * 8 6 5 10 10 Si 1.86790 * 120.00109 * 188.72000 * 8 6 5 11 11 H 1.48503 * 109.47457 * 89.99953 * 10 8 6 12 12 H 1.48500 * 109.47347 * 210.00349 * 10 8 6 13 13 H 1.48504 * 109.47178 * 330.00497 * 10 8 6 14 14 C 1.34773 * 119.99882 * 95.18910 * 5 4 3 15 15 O 1.21287 * 119.99912 * 186.46477 * 14 5 4 16 16 C 1.50698 * 120.00081 * 6.46991 * 14 5 4 17 17 H 1.09004 * 110.34304 * 319.51280 * 16 14 5 18 18 C 1.54338 * 110.30310 * 197.38666 * 16 14 5 19 19 C 1.54345 * 102.39575 * 267.44570 * 18 16 14 20 20 C 1.51380 * 105.16883 * 333.62796 * 19 18 16 21 21 C 1.38412 * 130.33533 * 197.24490 * 20 19 18 22 22 C 1.38604 * 120.17027 * 179.97438 * 21 20 19 23 23 O 1.35900 * 120.08936 * 180.02562 * 22 21 20 24 24 C 1.42901 * 116.99718 * 179.97438 * 23 22 21 25 25 C 1.38745 * 119.81414 * 0.06156 * 22 21 20 26 26 C 1.38006 * 119.87960 * 359.89930 * 25 22 21 27 27 C 1.38259 * 109.75647 * 17.20331 * 20 19 18 28 28 H 1.09000 * 109.46632 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47057 * 300.00024 * 1 2 3 30 30 H 1.09000 * 109.47117 * 60.00138 * 1 2 3 31 31 H 1.09002 * 109.47885 * 240.00155 * 2 1 3 32 32 H 1.08996 * 109.47744 * 119.99494 * 2 1 3 33 33 H 1.09000 * 109.47342 * 59.99600 * 3 2 1 34 34 H 1.09000 * 109.47029 * 299.99916 * 3 2 1 35 35 H 1.09002 * 109.46880 * 60.00396 * 4 3 2 36 36 H 1.08993 * 109.47537 * 300.00121 * 4 3 2 37 37 H 0.97004 * 119.99492 * 184.77457 * 9 8 6 38 38 H 1.09000 * 110.82514 * 149.21768 * 18 16 14 39 39 H 1.09007 * 110.99148 * 25.74946 * 18 16 14 40 40 H 1.08997 * 110.30207 * 214.69997 * 19 18 16 41 41 H 1.08997 * 110.38471 * 92.59157 * 19 18 16 42 42 H 1.08001 * 119.91534 * 359.97438 * 21 20 19 43 43 H 1.09003 * 109.46939 * 59.99732 * 24 23 22 44 44 H 1.09002 * 109.47067 * 179.97438 * 24 23 22 45 45 H 1.08991 * 109.47166 * 299.99933 * 24 23 22 46 46 H 1.07999 * 120.06123 * 179.97438 * 25 22 21 47 47 H 1.08003 * 119.84894 * 180.34644 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.1859 3.5052 -1.1828 7 1 3.4487 3.3779 -1.9617 8 6 5.2639 4.3597 -1.3795 9 7 6.2481 4.3868 -0.5091 10 14 5.3141 5.4697 -2.8810 11 1 4.6642 6.7659 -2.5604 12 1 6.7263 5.7077 -3.2737 13 1 4.5915 4.8179 -4.0028 14 6 4.3818 3.4247 1.1622 15 8 4.6733 4.6020 1.1757 16 6 4.3816 2.6338 2.4450 17 1 3.5284 1.9560 2.4721 18 6 4.3490 3.5846 3.6603 19 6 5.8481 3.7644 3.9805 20 6 6.5166 2.5073 3.4662 21 6 7.7626 1.9753 3.7493 22 6 8.1677 0.7929 3.1501 23 8 9.3912 0.2717 3.4296 24 6 9.7409 -0.9497 2.7754 25 6 7.3208 0.1435 2.2634 26 6 6.0788 0.6761 1.9838 27 6 5.6738 1.8575 2.5837 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 3.9337 0.9287 -0.8892 36 1 3.9330 0.9290 0.8908 37 1 6.9662 5.0313 -0.6090 38 1 3.8263 3.1241 4.4986 39 1 3.8917 4.5386 3.3976 40 1 5.9964 3.8587 5.0562 41 1 6.2437 4.6405 3.4666 42 1 8.4209 2.4827 4.4390 43 1 9.7256 -0.8009 1.6957 44 1 10.7402 -1.2549 3.0857 45 1 9.0237 -1.7247 3.0455 46 1 7.6326 -0.7777 1.7939 47 1 5.4177 0.1672 1.2979 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182445925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:46 Heat of formation + Delta-G solvation = -58.765110 kcal Electronic energy + Delta-G solvation = -27888.268131 eV Core-core repulsion = 24228.800164 eV Total energy + Delta-G solvation = -3659.467966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.69594 -40.33283 -38.86126 -37.00031 -35.62581 -34.80570 -33.64525 -32.35765 -29.55460 -29.45991 -29.30587 -27.58127 -26.42388 -24.39347 -23.62735 -22.79376 -21.96294 -21.61195 -20.32421 -18.70017 -18.38893 -17.55101 -17.36680 -16.76301 -16.58187 -16.37667 -16.12861 -15.68324 -15.46096 -15.20692 -15.14563 -14.36686 -14.25619 -14.13231 -13.82026 -13.76479 -13.45454 -13.36330 -13.06406 -12.94471 -12.85910 -12.72107 -12.60116 -12.27818 -12.17251 -12.16623 -12.03142 -11.98952 -11.86386 -11.77123 -11.58933 -11.45138 -11.29626 -10.79421 -9.98165 -9.68962 -9.05993 -8.76255 -8.00799 -5.90207 0.42349 0.48879 1.38272 1.43184 1.49518 2.33584 2.37282 2.57796 2.85294 3.25389 3.35203 3.59593 3.79244 3.93143 4.07154 4.11298 4.12453 4.23940 4.35264 4.35998 4.38577 4.41635 4.45923 4.53532 4.58092 4.63812 4.71950 4.75427 4.78567 4.86968 4.93922 4.98380 5.02222 5.07421 5.08555 5.19186 5.21370 5.30505 5.39273 5.41185 5.45999 5.49004 5.52975 5.58498 5.79369 5.81551 6.23448 6.49239 7.12012 7.34422 7.82361 8.55330 8.97135 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009262 B = 0.005472 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.360524 B = 5116.151892 C = 6278.220199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.125 4.125 4 C 0.101 3.899 5 N -0.473 5.473 6 C -0.345 4.345 7 H 0.078 0.922 8 C 0.000 4.000 9 N -0.850 5.850 10 Si 0.967 3.033 11 H -0.290 1.290 12 H -0.288 1.288 13 H -0.255 1.255 14 C 0.474 3.526 15 O -0.568 6.568 16 C -0.060 4.060 17 H 0.101 0.899 18 C -0.096 4.096 19 C -0.071 4.071 20 C -0.060 4.060 21 C -0.159 4.159 22 C 0.118 3.882 23 O -0.334 6.334 24 C 0.019 3.981 25 C -0.208 4.208 26 C -0.073 4.073 27 C -0.120 4.120 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.250 0.750 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.055 0.945 42 H 0.134 0.866 43 H 0.055 0.945 44 H 0.123 0.877 45 H 0.069 0.931 46 H 0.153 0.847 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.783 -13.912 7.739 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.163 4.163 4 C -0.023 4.023 5 N -0.194 5.194 6 C -0.473 4.473 7 H 0.096 0.904 8 C -0.205 4.205 9 N -0.487 5.487 10 Si 0.793 3.207 11 H -0.217 1.217 12 H -0.215 1.215 13 H -0.179 1.179 14 C 0.262 3.738 15 O -0.447 6.447 16 C -0.082 4.082 17 H 0.119 0.881 18 C -0.133 4.133 19 C -0.108 4.108 20 C -0.060 4.060 21 C -0.177 4.177 22 C 0.073 3.927 23 O -0.248 6.248 24 C -0.075 4.075 25 C -0.227 4.227 26 C -0.091 4.091 27 C -0.121 4.121 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.122 0.878 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.073 0.927 42 H 0.151 0.849 43 H 0.073 0.927 44 H 0.141 0.859 45 H 0.088 0.912 46 H 0.171 0.829 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.280 -13.218 7.855 15.430 hybrid contribution 0.331 0.916 -1.286 1.613 sum -0.949 -12.302 6.569 13.979 Atomic orbital electron populations 1.21742 0.95068 1.02166 1.01598 1.21447 0.96487 0.94765 1.02651 1.21930 0.95147 0.98076 1.01192 1.21816 0.94465 0.84276 1.01700 1.43480 1.60406 1.10858 1.04659 1.19299 1.06731 1.27274 0.94030 0.90407 1.25980 0.94175 1.00670 0.99709 1.70122 1.09183 1.33100 1.36280 0.85328 0.76862 0.78858 0.79610 1.21673 1.21452 1.17913 1.20231 0.81713 0.87275 0.84537 1.90444 1.49800 1.18554 1.85881 1.20744 0.96228 0.96649 0.94541 0.88079 1.22139 0.96070 0.99043 0.96060 1.20961 0.94750 0.93764 1.01325 1.20549 0.93263 0.95875 0.96319 1.19878 0.96520 0.96262 1.05065 1.18838 0.85174 0.93521 0.95212 1.86002 1.30642 1.41297 1.66857 1.23338 1.03092 0.83510 0.97601 1.21266 0.95224 1.03432 1.02768 1.20705 0.96233 0.94634 0.97502 1.20275 0.96995 0.95789 0.99052 0.91276 0.92805 0.93398 0.91635 0.90817 0.92901 0.93585 0.92351 0.90291 0.94104 0.87755 0.91716 0.88159 0.92657 0.84850 0.92664 0.85933 0.91202 0.82935 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.91 71.98 0.71 -2.25 16 2 C -0.12 -2.66 5.93 30.59 0.18 -2.48 16 3 C -0.12 -3.96 5.51 30.60 0.17 -3.79 16 4 C 0.10 3.82 4.97 86.38 0.43 4.25 16 5 N -0.47 -23.69 2.58 -635.54 -1.64 -25.33 16 6 C -0.35 -19.32 9.33 84.04 0.78 -18.54 16 7 H 0.08 4.19 7.85 -2.91 -0.02 4.17 16 8 C 0.00 0.03 4.71 84.93 0.40 0.43 16 9 N -0.85 -53.04 10.65 21.66 0.23 -52.81 16 10 Si 0.97 46.60 29.56 68.60 2.03 48.63 16 11 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 12 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 13 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 14 C 0.47 24.40 5.96 87.66 0.52 24.92 16 15 O -0.57 -34.60 12.87 -3.05 -0.04 -34.64 16 16 C -0.06 -2.39 2.30 -11.61 -0.03 -2.41 16 17 H 0.10 3.45 6.91 -2.39 -0.02 3.44 16 18 C -0.10 -3.37 6.27 31.50 0.20 -3.17 16 19 C -0.07 -2.56 6.67 30.52 0.20 -2.36 16 20 C -0.06 -2.28 6.13 -19.60 -0.12 -2.40 16 21 C -0.16 -5.61 9.98 22.40 0.22 -5.39 16 22 C 0.12 3.89 6.68 22.48 0.15 4.04 16 23 O -0.33 -9.59 10.50 -92.43 -0.97 -10.56 16 24 C 0.02 0.35 9.81 113.37 1.11 1.46 16 25 C -0.21 -6.55 9.04 22.34 0.20 -6.35 16 26 C -0.07 -2.56 9.49 22.29 0.21 -2.34 16 27 C -0.12 -4.68 5.35 -19.57 -0.10 -4.79 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 2.22 8.08 -2.39 -0.02 2.20 16 36 H 0.08 2.67 3.39 -2.39 -0.01 2.66 16 37 H 0.25 15.38 8.32 -92.71 -0.77 14.61 16 38 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.06 2.55 7.32 -2.38 -0.02 2.53 16 40 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 41 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 43 H 0.05 1.03 7.66 -2.39 -0.02 1.01 16 44 H 0.12 1.58 8.14 -2.39 -0.02 1.57 16 45 H 0.07 1.07 7.67 -2.39 -0.02 1.06 16 46 H 0.15 3.73 6.31 -2.91 -0.02 3.71 16 47 H 0.13 4.21 5.96 -2.91 -0.02 4.19 16 Total: -1.00 -76.30 372.62 5.82 -70.48 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.96 Total: 25.39 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 5.25 Total: -21.17 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -1.41 Total: -78.14 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -1.01 Total: -45.19 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -76.30 5.82 -70.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182445925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.718 kcal (2) G-P(sol) polarization free energy of solvation -76.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds