Wall clock time and date at job start Tue Mar 31 2020 12:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47106 * 2 1 4 4 C 1.52995 * 109.47526 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47522 * 186.23450 * 4 3 2 6 6 C 1.37096 * 120.00299 * 294.00788 * 5 4 3 7 7 H 1.08000 * 119.99836 * 34.83801 * 6 5 4 8 8 C 1.38946 * 120.00115 * 214.84229 * 6 5 4 9 9 N 1.31410 * 120.00222 * 20.01944 * 8 6 5 10 10 Si 1.86801 * 119.99759 * 200.02804 * 8 6 5 11 11 H 1.48503 * 109.47341 * 90.00124 * 10 8 6 12 12 H 1.48497 * 109.46912 * 209.99432 * 10 8 6 13 13 H 1.48500 * 109.47112 * 329.99555 * 10 8 6 14 14 C 1.34780 * 119.99784 * 114.00439 * 5 4 3 15 15 O 1.21294 * 119.99791 * 186.06625 * 14 5 4 16 16 C 1.50698 * 120.00196 * 6.06987 * 14 5 4 17 17 H 1.08999 * 109.67710 * 44.71080 * 16 14 5 18 18 C 1.53327 * 109.68577 * 284.15043 * 16 14 5 19 19 C 1.52740 * 108.37635 * 170.35565 * 18 16 14 20 20 C 1.50626 * 110.58650 * 51.05685 * 19 18 16 21 21 C 1.38913 * 117.74908 * 162.53143 * 20 19 18 22 22 C 1.37928 * 120.55029 * 179.75948 * 21 20 19 23 23 C 1.38272 * 119.77037 * 0.02562 * 22 21 20 24 24 C 1.37928 * 119.76891 * 0.10773 * 23 22 21 25 25 C 1.37664 * 122.57134 * 342.46484 * 20 19 18 26 26 C 1.50632 * 122.57102 * 0.37311 * 25 20 19 27 27 H 1.08999 * 109.25200 * 222.16220 * 26 25 20 28 28 O 1.42903 * 109.22167 * 102.71368 * 26 25 20 29 29 H 1.09003 * 109.46922 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46934 * 300.00060 * 1 2 3 31 31 H 1.09001 * 109.47102 * 60.00293 * 1 2 3 32 32 H 1.08997 * 109.46934 * 239.99940 * 2 1 3 33 33 H 1.09001 * 109.47102 * 119.99707 * 2 1 3 34 34 H 1.09004 * 109.47064 * 59.99860 * 3 2 1 35 35 H 1.09008 * 109.47204 * 300.00439 * 3 2 1 36 36 H 1.09003 * 109.47041 * 66.23126 * 4 3 2 37 37 H 1.08998 * 109.47111 * 306.24024 * 4 3 2 38 38 H 0.97000 * 119.99925 * 184.96110 * 9 8 6 39 39 H 1.09004 * 109.68296 * 290.07463 * 18 16 14 40 40 H 1.09005 * 109.68101 * 50.63172 * 18 16 14 41 41 H 1.08994 * 109.24932 * 171.34437 * 19 18 16 42 42 H 1.08995 * 109.24857 * 290.77014 * 19 18 16 43 43 H 1.08007 * 119.72808 * 359.78365 * 21 20 19 44 44 H 1.07999 * 120.11966 * 180.02562 * 22 21 20 45 45 H 1.08002 * 120.11482 * 180.12531 * 23 22 21 46 46 H 1.08001 * 119.72766 * 180.02562 * 24 23 22 47 47 H 0.96700 * 114.00215 * 59.44556 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8156 0.1506 6 6 3.8317 3.7358 -0.8400 7 1 2.9136 3.7031 -1.4078 8 6 4.7834 4.7105 -1.1138 9 7 6.0289 4.5384 -0.7316 10 14 4.2924 6.2655 -2.0249 11 1 3.8743 7.3015 -1.0464 12 1 5.4492 6.7651 -2.8105 13 1 3.1633 5.9663 -2.9419 14 6 4.7301 3.1742 1.2627 15 8 5.0381 4.3343 1.4375 16 6 5.0986 2.1339 2.2888 17 1 5.4975 1.2509 1.7894 18 6 3.8581 1.7507 3.1044 19 6 4.2025 0.5348 3.9622 20 6 5.4711 0.7759 4.7376 21 6 5.7303 -0.0477 5.8259 22 6 6.8773 0.1188 6.5736 23 6 7.7771 1.1137 6.2382 24 6 7.5202 1.9342 5.1597 25 6 6.3654 1.7684 4.4056 26 6 6.1463 2.7020 3.2440 27 1 7.0861 2.8359 2.7084 28 8 5.6993 3.9673 3.7351 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.9337 1.0283 -0.9397 37 1 3.9330 0.8352 0.8297 38 1 6.6776 5.2484 -0.8582 39 1 3.5693 2.5830 3.7464 40 1 3.0375 1.5042 2.4306 41 1 3.3862 0.3436 4.6587 42 1 4.3349 -0.3340 3.3174 43 1 5.0280 -0.8251 6.0886 44 1 7.0721 -0.5257 7.4180 45 1 8.6780 1.2477 6.8186 46 1 8.2237 2.7109 4.8981 47 1 6.3182 4.3941 4.3433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183392687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:51 Heat of formation + Delta-G solvation = -58.588881 kcal Electronic energy + Delta-G solvation = -28046.293237 eV Core-core repulsion = 24386.832913 eV Total energy + Delta-G solvation = -3659.460325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.23223 -38.35531 -36.33736 -35.23199 -34.58500 -33.17162 -31.73933 -31.28244 -30.01731 -28.28008 -28.00590 -25.10704 -23.39785 -22.92987 -22.35868 -21.93422 -20.58538 -19.84489 -18.49144 -17.19138 -16.32835 -16.12345 -15.61647 -15.22341 -14.87082 -14.75016 -14.46313 -14.16971 -13.91306 -13.76270 -13.52012 -13.23771 -13.06243 -12.77628 -12.50397 -12.36517 -12.12684 -11.82656 -11.70164 -11.64797 -11.25541 -11.12782 -10.98219 -10.85922 -10.74374 -10.72079 -10.56311 -10.47214 -10.24767 -10.01215 -9.92451 -9.84663 -9.38290 -8.73140 -8.66308 -8.52922 -7.70246 -6.86520 -5.93599 -3.65042 1.40569 1.43142 3.41478 3.47543 3.51171 3.79438 4.38734 4.48705 4.76222 4.80762 4.97580 5.01127 5.03679 5.12109 5.28332 5.29358 5.33133 5.42507 5.45454 5.48007 5.54047 5.58285 5.72256 5.78354 5.83279 5.91476 6.05402 6.06379 6.08864 6.09403 6.16827 6.19462 6.20329 6.30044 6.38445 6.39640 6.48699 6.49781 6.54133 6.61506 6.77388 6.80587 6.83785 7.01115 7.07635 7.74280 8.27114 8.39857 9.23017 9.41561 9.87067 10.57204 11.12829 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.005179 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.803379 B = 5405.113879 C = 7439.799882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.130 4.130 4 C 0.105 3.895 5 N -0.464 5.464 6 C -0.337 4.337 7 H 0.077 0.923 8 C 0.065 3.935 9 N -0.827 5.827 10 Si 0.903 3.097 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.276 1.276 14 C 0.478 3.522 15 O -0.501 6.501 16 C -0.093 4.093 17 H 0.083 0.917 18 C -0.110 4.110 19 C -0.082 4.082 20 C -0.057 4.057 21 C -0.127 4.127 22 C -0.122 4.122 23 C -0.129 4.129 24 C -0.114 4.114 25 C -0.106 4.106 26 C 0.170 3.830 27 H 0.061 0.939 28 O -0.519 6.519 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.260 0.740 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.412 -11.750 10.783 16.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.169 4.169 4 C -0.019 4.019 5 N -0.187 5.187 6 C -0.464 4.464 7 H 0.095 0.905 8 C -0.145 4.145 9 N -0.463 5.463 10 Si 0.731 3.269 11 H -0.206 1.206 12 H -0.216 1.216 13 H -0.201 1.201 14 C 0.264 3.736 15 O -0.375 6.375 16 C -0.115 4.115 17 H 0.101 0.899 18 C -0.148 4.148 19 C -0.119 4.119 20 C -0.058 4.058 21 C -0.145 4.145 22 C -0.140 4.140 23 C -0.147 4.147 24 C -0.132 4.132 25 C -0.107 4.107 26 C 0.110 3.890 27 H 0.079 0.921 28 O -0.321 6.321 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.560 -11.206 10.425 15.384 hybrid contribution 0.507 0.688 -0.006 0.854 sum -1.053 -10.518 10.418 14.842 Atomic orbital electron populations 1.21759 0.96425 1.00782 1.01760 1.21501 0.95367 0.97680 1.01493 1.21960 0.97130 0.95278 1.02550 1.21503 0.93147 0.86914 1.00379 1.43298 1.52862 1.06963 1.15595 1.18948 1.02020 1.11110 1.14301 0.90538 1.24975 0.93751 0.99427 0.96326 1.69916 1.01456 1.31580 1.43317 0.86349 0.77674 0.83960 0.78955 1.20650 1.21629 1.20130 1.19326 0.84086 0.88660 0.81569 1.90550 1.53034 1.19098 1.74804 1.21317 0.95660 0.99028 0.95472 0.89881 1.21599 0.97437 0.97382 0.98338 1.20568 0.94083 0.99165 0.98102 1.19714 0.95912 0.94690 0.95435 1.21163 0.97814 0.99680 0.95837 1.21026 0.94775 0.98473 0.99730 1.21006 0.99557 0.96403 0.97726 1.21201 0.96867 0.99548 0.95588 1.20608 0.94328 0.97310 0.98429 1.20180 0.97100 0.82295 0.89415 0.92085 1.86901 1.47346 1.32070 1.65823 0.93386 0.92952 0.92878 0.92268 0.92444 0.92194 0.91606 0.93054 0.92095 0.92945 0.90690 0.90537 0.90801 0.90584 0.86327 0.86400 0.86332 0.86216 0.79737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.12 -1.57 5.93 -26.73 -0.16 -1.73 16 3 C -0.13 -2.18 4.77 -26.73 -0.13 -2.31 16 4 C 0.11 2.04 4.90 -4.05 -0.02 2.02 16 5 N -0.46 -11.59 2.69 -114.82 -0.31 -11.90 16 6 C -0.34 -9.37 9.05 -14.94 -0.14 -9.50 16 7 H 0.08 2.05 7.24 -52.49 -0.38 1.67 16 8 C 0.06 1.86 4.35 -17.47 -0.08 1.78 16 9 N -0.83 -24.99 11.16 55.50 0.62 -24.37 16 10 Si 0.90 22.53 29.60 -169.99 -5.03 17.50 16 11 H -0.28 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.48 12.18 6.02 -10.99 -0.07 12.12 16 15 O -0.50 -14.92 11.88 -17.44 -0.21 -15.12 16 16 C -0.09 -1.84 1.50 -91.74 -0.14 -1.97 16 17 H 0.08 1.57 7.08 -51.93 -0.37 1.21 16 18 C -0.11 -1.83 4.78 -26.70 -0.13 -1.96 16 19 C -0.08 -1.09 5.67 -28.05 -0.16 -1.25 16 20 C -0.06 -0.81 5.74 -104.62 -0.60 -1.41 16 21 C -0.13 -1.53 9.61 -39.44 -0.38 -1.91 16 22 C -0.12 -1.37 10.05 -39.68 -0.40 -1.76 16 23 C -0.13 -1.50 10.05 -39.68 -0.40 -1.90 16 24 C -0.11 -1.53 9.52 -39.44 -0.38 -1.91 16 25 C -0.11 -1.64 5.33 -104.61 -0.56 -2.20 16 26 C 0.17 3.19 2.74 -28.05 -0.08 3.11 16 27 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 28 O -0.52 -10.50 10.70 -58.22 -0.62 -11.12 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 1.04 7.34 -51.93 -0.38 0.66 16 35 H 0.07 1.19 7.46 -51.92 -0.39 0.80 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.04 4.72 -51.93 -0.25 0.80 16 38 H 0.26 7.64 8.32 -40.82 -0.34 7.30 16 39 H 0.07 1.39 7.66 -51.93 -0.40 1.00 16 40 H 0.08 1.24 5.20 -51.93 -0.27 0.97 16 41 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.12 1.15 8.05 -52.48 -0.42 0.73 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.12 1.45 8.05 -52.49 -0.42 1.02 16 47 H 0.36 5.67 8.98 45.56 0.41 6.08 16 LS Contribution 366.73 15.07 5.53 5.53 Total: -1.00 -34.47 366.73 -10.10 -44.57 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.65 Total: 7.05 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -3.43 Total: -12.14 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.31 Total: -36.27 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.83 Total: -26.24 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.47 -10.10 -44.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183392687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.017 kcal (2) G-P(sol) polarization free energy of solvation -34.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds