Wall clock time and date at job start Tue Mar 31 2020 12:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47106 * 2 1 4 4 C 1.52995 * 109.47526 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47522 * 186.23450 * 4 3 2 6 6 C 1.37096 * 120.00299 * 294.00788 * 5 4 3 7 7 H 1.08000 * 119.99836 * 34.83801 * 6 5 4 8 8 C 1.38946 * 120.00115 * 214.84229 * 6 5 4 9 9 N 1.31410 * 120.00222 * 20.01944 * 8 6 5 10 10 Si 1.86801 * 119.99759 * 200.02804 * 8 6 5 11 11 H 1.48503 * 109.47341 * 90.00124 * 10 8 6 12 12 H 1.48497 * 109.46912 * 209.99432 * 10 8 6 13 13 H 1.48500 * 109.47112 * 329.99555 * 10 8 6 14 14 C 1.34780 * 119.99784 * 114.00439 * 5 4 3 15 15 O 1.21294 * 119.99791 * 186.06625 * 14 5 4 16 16 C 1.50698 * 120.00196 * 6.06987 * 14 5 4 17 17 H 1.08999 * 109.67710 * 44.71080 * 16 14 5 18 18 C 1.53327 * 109.68577 * 284.15043 * 16 14 5 19 19 C 1.52740 * 108.37635 * 170.35565 * 18 16 14 20 20 C 1.50626 * 110.58650 * 51.05685 * 19 18 16 21 21 C 1.38913 * 117.74908 * 162.53143 * 20 19 18 22 22 C 1.37928 * 120.55029 * 179.75948 * 21 20 19 23 23 C 1.38272 * 119.77037 * 0.02562 * 22 21 20 24 24 C 1.37928 * 119.76891 * 0.10773 * 23 22 21 25 25 C 1.37664 * 122.57134 * 342.46484 * 20 19 18 26 26 C 1.50632 * 122.57102 * 0.37311 * 25 20 19 27 27 H 1.08999 * 109.25200 * 222.16220 * 26 25 20 28 28 O 1.42903 * 109.22167 * 102.71368 * 26 25 20 29 29 H 1.09003 * 109.46922 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46934 * 300.00060 * 1 2 3 31 31 H 1.09001 * 109.47102 * 60.00293 * 1 2 3 32 32 H 1.08997 * 109.46934 * 239.99940 * 2 1 3 33 33 H 1.09001 * 109.47102 * 119.99707 * 2 1 3 34 34 H 1.09004 * 109.47064 * 59.99860 * 3 2 1 35 35 H 1.09008 * 109.47204 * 300.00439 * 3 2 1 36 36 H 1.09003 * 109.47041 * 66.23126 * 4 3 2 37 37 H 1.08998 * 109.47111 * 306.24024 * 4 3 2 38 38 H 0.97000 * 119.99925 * 184.96110 * 9 8 6 39 39 H 1.09004 * 109.68296 * 290.07463 * 18 16 14 40 40 H 1.09005 * 109.68101 * 50.63172 * 18 16 14 41 41 H 1.08994 * 109.24932 * 171.34437 * 19 18 16 42 42 H 1.08995 * 109.24857 * 290.77014 * 19 18 16 43 43 H 1.08007 * 119.72808 * 359.78365 * 21 20 19 44 44 H 1.07999 * 120.11966 * 180.02562 * 22 21 20 45 45 H 1.08002 * 120.11482 * 180.12531 * 23 22 21 46 46 H 1.08001 * 119.72766 * 180.02562 * 24 23 22 47 47 H 0.96700 * 114.00215 * 59.44556 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8156 0.1506 6 6 3.8317 3.7358 -0.8400 7 1 2.9136 3.7031 -1.4078 8 6 4.7834 4.7105 -1.1138 9 7 6.0289 4.5384 -0.7316 10 14 4.2924 6.2655 -2.0249 11 1 3.8743 7.3015 -1.0464 12 1 5.4492 6.7651 -2.8105 13 1 3.1633 5.9663 -2.9419 14 6 4.7301 3.1742 1.2627 15 8 5.0381 4.3343 1.4375 16 6 5.0986 2.1339 2.2888 17 1 5.4975 1.2509 1.7894 18 6 3.8581 1.7507 3.1044 19 6 4.2025 0.5348 3.9622 20 6 5.4711 0.7759 4.7376 21 6 5.7303 -0.0477 5.8259 22 6 6.8773 0.1188 6.5736 23 6 7.7771 1.1137 6.2382 24 6 7.5202 1.9342 5.1597 25 6 6.3654 1.7684 4.4056 26 6 6.1463 2.7020 3.2440 27 1 7.0861 2.8359 2.7084 28 8 5.6993 3.9673 3.7351 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.9337 1.0283 -0.9397 37 1 3.9330 0.8352 0.8297 38 1 6.6776 5.2484 -0.8582 39 1 3.5693 2.5830 3.7464 40 1 3.0375 1.5042 2.4306 41 1 3.3862 0.3436 4.6587 42 1 4.3349 -0.3340 3.3174 43 1 5.0280 -0.8251 6.0886 44 1 7.0721 -0.5257 7.4180 45 1 8.6780 1.2477 6.8186 46 1 8.2237 2.7109 4.8981 47 1 6.3182 4.3941 4.3433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183392687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:50 Heat of formation + Delta-G solvation = -79.188850 kcal Electronic energy + Delta-G solvation = -28047.186519 eV Core-core repulsion = 24386.832913 eV Total energy + Delta-G solvation = -3660.353606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.52449 -39.95334 -37.75928 -36.80731 -35.91097 -34.91301 -33.56953 -32.47575 -31.26667 -29.57993 -29.37780 -27.00871 -24.78902 -24.16922 -23.74419 -22.97150 -21.86588 -21.36659 -20.11949 -18.71897 -17.87074 -17.46824 -17.31854 -16.76089 -16.34696 -15.97335 -15.82504 -15.57459 -15.37730 -15.29287 -14.85893 -14.52659 -14.24746 -14.05866 -13.89380 -13.82871 -13.39323 -13.26634 -13.10300 -12.93967 -12.87605 -12.81610 -12.44167 -12.22645 -12.14833 -12.09233 -12.03359 -11.96485 -11.85370 -11.69626 -11.31716 -11.17574 -10.88080 -10.70931 -9.72492 -9.71254 -9.50761 -8.94013 -8.10928 -5.84748 0.41792 0.48837 1.36783 1.45154 1.49067 2.37475 2.62023 2.82828 3.14893 3.34411 3.51555 3.73636 3.75173 3.96148 4.03559 4.12139 4.17825 4.18886 4.21414 4.32457 4.38357 4.44206 4.51503 4.56271 4.66957 4.70279 4.76234 4.79547 4.86577 4.94586 5.01249 5.04333 5.06302 5.12101 5.14825 5.21077 5.22686 5.37076 5.44103 5.48212 5.54767 5.58361 5.62036 5.64800 5.77418 6.13705 6.22881 6.91250 7.11315 7.38715 7.83432 8.57409 8.94606 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.005179 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.803379 B = 5405.113879 C = 7439.799882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.120 4.120 4 C 0.103 3.897 5 N -0.480 5.480 6 C -0.348 4.348 7 H 0.080 0.920 8 C 0.012 3.988 9 N -0.863 5.863 10 Si 0.961 3.039 11 H -0.295 1.295 12 H -0.286 1.286 13 H -0.254 1.254 14 C 0.464 3.536 15 O -0.555 6.555 16 C -0.086 4.086 17 H 0.091 0.909 18 C -0.099 4.099 19 C -0.075 4.075 20 C -0.072 4.072 21 C -0.125 4.125 22 C -0.116 4.116 23 C -0.129 4.129 24 C -0.127 4.127 25 C -0.128 4.128 26 C 0.174 3.826 27 H 0.029 0.971 28 O -0.547 6.547 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.086 0.914 38 H 0.253 0.747 39 H 0.049 0.951 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.149 0.851 44 H 0.152 0.848 45 H 0.144 0.856 46 H 0.120 0.880 47 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.527 -15.017 12.660 19.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.158 4.158 4 C -0.021 4.021 5 N -0.203 5.203 6 C -0.476 4.476 7 H 0.098 0.902 8 C -0.193 4.193 9 N -0.500 5.500 10 Si 0.787 3.213 11 H -0.222 1.222 12 H -0.211 1.211 13 H -0.178 1.178 14 C 0.252 3.748 15 O -0.433 6.433 16 C -0.108 4.108 17 H 0.109 0.891 18 C -0.137 4.137 19 C -0.111 4.111 20 C -0.072 4.072 21 C -0.143 4.143 22 C -0.134 4.134 23 C -0.147 4.147 24 C -0.145 4.145 25 C -0.129 4.129 26 C 0.115 3.885 27 H 0.047 0.953 28 O -0.351 6.351 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.167 0.833 44 H 0.170 0.830 45 H 0.162 0.838 46 H 0.138 0.862 47 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.701 -14.518 12.282 19.207 hybrid contribution 0.859 1.675 -0.534 1.956 sum -1.842 -12.843 11.748 17.503 Atomic orbital electron populations 1.21743 0.95157 1.02167 1.01499 1.21458 0.96401 0.94615 1.02807 1.21836 0.94849 0.98066 1.01091 1.21734 0.94953 0.84258 1.01114 1.43603 1.52814 1.08834 1.15000 1.19268 1.01811 1.12072 1.14434 0.90228 1.25806 0.93791 1.02274 0.97448 1.70030 1.02363 1.31958 1.45696 0.85437 0.78068 0.79981 0.77822 1.22222 1.21144 1.17785 1.20336 0.82849 0.89317 0.82272 1.90501 1.54837 1.21677 1.76270 1.21245 0.97672 0.97332 0.94565 0.89079 1.21495 0.95745 0.98395 0.98060 1.20574 0.94727 0.97564 0.98269 1.19893 0.95920 0.94841 0.96587 1.21476 0.98637 0.99590 0.94601 1.21484 0.93848 0.97992 1.00036 1.21339 1.00652 0.95783 0.96881 1.21311 0.96451 1.00375 0.96370 1.20289 0.96336 0.98098 0.98166 1.20030 0.95088 0.82749 0.90666 0.95257 1.86839 1.48387 1.33468 1.66439 0.91145 0.92953 0.93519 0.91594 0.90480 0.93159 0.93585 0.93516 0.89633 0.93770 0.93184 0.90107 0.88014 0.88479 0.83281 0.83020 0.83780 0.86244 0.78242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.91 71.98 0.71 -2.29 16 2 C -0.11 -2.65 5.93 30.59 0.18 -2.47 16 3 C -0.12 -3.92 4.77 30.59 0.15 -3.78 16 4 C 0.10 3.97 4.90 86.38 0.42 4.40 16 5 N -0.48 -24.74 2.69 -635.55 -1.71 -26.45 16 6 C -0.35 -19.99 9.05 84.04 0.76 -19.23 16 7 H 0.08 4.39 7.24 -2.91 -0.02 4.37 16 8 C 0.01 0.72 4.35 84.93 0.37 1.09 16 9 N -0.86 -54.81 11.16 21.66 0.24 -54.57 16 10 Si 0.96 47.94 29.60 68.60 2.03 49.97 16 11 H -0.29 -15.31 7.11 99.48 0.71 -14.60 16 12 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 13 H -0.25 -11.61 7.11 99.48 0.71 -10.90 16 14 C 0.46 24.76 6.02 87.66 0.53 25.29 16 15 O -0.56 -35.06 11.88 18.90 0.22 -34.84 16 16 C -0.09 -3.51 1.50 -11.52 -0.02 -3.53 16 17 H 0.09 3.48 7.08 -2.39 -0.02 3.47 16 18 C -0.10 -3.25 4.78 30.62 0.15 -3.10 16 19 C -0.07 -1.75 5.67 29.74 0.17 -1.58 16 20 C -0.07 -1.87 5.74 -19.86 -0.11 -1.98 16 21 C -0.13 -2.47 9.61 22.36 0.21 -2.26 16 22 C -0.12 -2.08 10.05 22.20 0.22 -1.86 16 23 C -0.13 -2.63 10.05 22.20 0.22 -2.41 16 24 C -0.13 -3.33 9.52 22.36 0.21 -3.12 16 25 C -0.13 -3.94 5.33 -19.86 -0.11 -4.05 16 26 C 0.17 6.87 2.74 29.74 0.08 6.96 16 27 H 0.03 1.29 8.13 -2.39 -0.02 1.27 16 28 O -0.55 -23.64 10.70 -127.00 -1.36 -25.00 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.73 7.34 -2.38 -0.02 1.71 16 35 H 0.05 1.67 7.46 -2.38 -0.02 1.65 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.09 2.83 4.72 -2.39 -0.01 2.82 16 38 H 0.25 15.71 8.32 -92.71 -0.77 14.94 16 39 H 0.05 1.88 7.66 -2.38 -0.02 1.86 16 40 H 0.08 2.52 5.20 -2.38 -0.01 2.51 16 41 H 0.10 1.86 8.13 -2.39 -0.02 1.84 16 42 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.15 2.02 8.05 -2.91 -0.02 2.00 16 44 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 45 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 46 H 0.12 2.98 8.05 -2.91 -0.02 2.96 16 47 H 0.37 12.82 8.98 -74.06 -0.67 12.16 16 Total: -1.00 -80.22 366.73 3.88 -76.34 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.30 Total: 28.47 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 4.15 Total: -13.91 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -1.47 Total: -81.02 kcal Atomic # 8 Polarization: -58.70 SS G_CDS: -1.13 Total: -59.84 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -80.22 3.88 -76.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183392687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.852 kcal (2) G-P(sol) polarization free energy of solvation -80.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds