Wall clock time and date at job start Tue Mar 31 2020 12:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46944 * 2 1 4 4 C 1.53002 * 109.47301 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47541 * 179.97438 * 4 3 2 6 6 C 1.37095 * 120.00381 * 265.21269 * 5 4 3 7 7 H 1.08006 * 119.99762 * 55.55780 * 6 5 4 8 8 C 1.38946 * 120.00070 * 235.56864 * 6 5 4 9 9 N 1.31418 * 119.99910 * 198.35499 * 8 6 5 10 10 Si 1.86796 * 120.00308 * 18.35467 * 8 6 5 11 11 H 1.48499 * 109.47248 * 94.56560 * 10 8 6 12 12 H 1.48500 * 109.47134 * 214.56974 * 10 8 6 13 13 H 1.48505 * 109.46879 * 334.56575 * 10 8 6 14 14 C 1.34780 * 120.00054 * 85.21167 * 5 4 3 15 15 O 1.21297 * 119.99914 * 4.40431 * 14 5 4 16 16 C 1.50697 * 119.99905 * 184.40377 * 14 5 4 17 17 H 1.08998 * 109.68208 * 311.05260 * 16 14 5 18 18 C 1.53333 * 109.68139 * 71.57850 * 16 14 5 19 19 C 1.52738 * 108.37979 * 189.60510 * 18 16 14 20 20 C 1.50636 * 110.58548 * 308.90460 * 19 18 16 21 21 C 1.38912 * 117.74700 * 197.48675 * 20 19 18 22 22 C 1.37927 * 120.54896 * 180.28886 * 21 20 19 23 23 C 1.38264 * 119.76743 * 0.09165 * 22 21 20 24 24 C 1.37932 * 119.77325 * 0.17366 * 23 22 21 25 25 C 1.37656 * 122.56722 * 17.71066 * 20 19 18 26 26 C 1.50631 * 122.56714 * 359.37727 * 25 20 19 27 27 H 1.09001 * 109.22080 * 257.43968 * 26 25 20 28 28 O 1.42901 * 109.25229 * 137.99568 * 26 25 20 29 29 H 1.09007 * 109.46963 * 300.00212 * 1 2 3 30 30 H 1.09001 * 109.46766 * 59.99858 * 1 2 3 31 31 H 1.08994 * 109.47010 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47220 * 240.00212 * 2 1 3 33 33 H 1.09002 * 109.47347 * 119.99400 * 2 1 3 34 34 H 1.09002 * 109.47757 * 60.00469 * 3 2 1 35 35 H 1.09001 * 109.47505 * 299.99689 * 3 2 1 36 36 H 1.08999 * 109.47145 * 59.99507 * 4 3 2 37 37 H 1.09003 * 109.47015 * 300.00239 * 4 3 2 38 38 H 0.96999 * 119.99858 * 180.02562 * 9 8 6 39 39 H 1.09004 * 109.68238 * 69.88343 * 18 16 14 40 40 H 1.08996 * 109.70840 * 309.34670 * 18 16 14 41 41 H 1.08999 * 109.25013 * 188.62341 * 19 18 16 42 42 H 1.08992 * 109.25220 * 69.19521 * 19 18 16 43 43 H 1.08008 * 119.72275 * 0.31186 * 21 20 19 44 44 H 1.07997 * 120.11848 * 180.02562 * 22 21 20 45 45 H 1.08000 * 120.11233 * 179.89991 * 23 22 21 46 46 H 1.08004 * 119.72743 * 179.64731 * 24 23 22 47 47 H 0.96701 * 114.00631 * 58.89586 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.3798 3.4367 -1.1847 7 1 3.6496 3.4950 -1.9784 8 6 5.6449 3.9827 -1.3630 9 7 5.8512 4.8664 -2.3137 10 14 7.0527 3.4609 -0.2517 11 1 7.8134 2.3622 -0.8992 12 1 7.9546 4.6174 -0.0191 13 1 6.5090 2.9882 1.0469 14 6 4.1916 3.4919 1.1616 15 8 3.9840 2.9254 2.2139 16 6 4.5985 4.9429 1.1545 17 1 5.4703 5.0766 0.5140 18 6 3.4394 5.8018 0.6352 19 6 3.9547 7.2223 0.4122 20 6 4.6684 7.7255 1.6396 21 6 4.8705 9.0950 1.7543 22 6 5.5228 9.6179 2.8513 23 6 5.9814 8.7726 3.8447 24 6 5.7865 7.4119 3.7301 25 6 5.1220 6.8841 2.6302 26 6 4.9305 5.3910 2.5765 27 1 4.1142 5.1097 3.2419 28 8 6.1314 4.7462 3.0055 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 3.9330 0.9288 -0.8908 37 1 3.9337 0.9286 0.8891 38 1 6.7345 5.2473 -2.4384 39 1 2.6340 5.8145 1.3697 40 1 3.0716 5.3927 -0.3058 41 1 3.1134 7.8791 0.1910 42 1 4.6444 7.2260 -0.4316 43 1 4.5136 9.7559 0.9782 44 1 5.6758 10.6838 2.9336 45 1 6.4943 9.1759 4.7053 46 1 6.1501 6.7518 4.5037 47 1 6.4062 4.9824 3.9020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183392702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:55 Heat of formation + Delta-G solvation = -71.446334 kcal Electronic energy + Delta-G solvation = -28233.301221 eV Core-core repulsion = 24573.283355 eV Total energy + Delta-G solvation = -3660.017866 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.26921 -38.76014 -36.47373 -35.26950 -34.89999 -33.97097 -31.92307 -31.16752 -30.18022 -28.56490 -27.98856 -24.60948 -24.14799 -22.88117 -22.23770 -21.66069 -20.64203 -19.82283 -18.63365 -17.45362 -17.34033 -15.84268 -15.59313 -15.38521 -14.98755 -14.90827 -14.65972 -14.10397 -14.00352 -13.77580 -13.35585 -13.34587 -12.98954 -12.75412 -12.61507 -12.58774 -12.26148 -12.14062 -11.92074 -11.66177 -11.53985 -11.19835 -10.96094 -10.92254 -10.78565 -10.72383 -10.64654 -10.55609 -10.26892 -9.99768 -9.93999 -9.73010 -9.56138 -8.94755 -8.60253 -8.49474 -8.29493 -7.45037 -6.45839 -4.23977 1.50765 1.55129 3.23427 3.35731 3.50761 3.84870 3.89717 4.23004 4.41969 4.75427 4.91309 4.94830 4.98517 5.09631 5.15914 5.32467 5.34517 5.47620 5.50448 5.52787 5.65057 5.67589 5.82709 5.86566 5.96427 6.03327 6.10277 6.12745 6.17557 6.20337 6.23592 6.27289 6.33218 6.41698 6.46777 6.51907 6.54051 6.61430 6.63055 6.82582 6.87137 6.92508 6.94244 6.95729 7.18370 7.73418 7.82920 8.06187 8.50045 9.04380 9.33662 9.79673 10.61654 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014610 B = 0.004942 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.012642 B = 5663.999144 C = 6165.381544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.127 4.127 4 C 0.110 3.890 5 N -0.476 5.476 6 C -0.349 4.349 7 H 0.096 0.904 8 C 0.081 3.919 9 N -0.857 5.857 10 Si 0.846 3.154 11 H -0.283 1.283 12 H -0.280 1.280 13 H -0.237 1.237 14 C 0.510 3.490 15 O -0.588 6.588 16 C -0.085 4.085 17 H 0.104 0.896 18 C -0.095 4.095 19 C -0.083 4.083 20 C -0.057 4.057 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.130 4.130 24 C -0.117 4.117 25 C -0.107 4.107 26 C 0.159 3.841 27 H 0.074 0.926 28 O -0.546 6.546 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.274 0.726 39 H 0.055 0.945 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.121 0.879 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.117 0.883 47 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.841 4.697 6.868 9.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.166 4.166 4 C -0.013 4.013 5 N -0.197 5.197 6 C -0.476 4.476 7 H 0.114 0.886 8 C -0.128 4.128 9 N -0.491 5.491 10 Si 0.671 3.329 11 H -0.210 1.210 12 H -0.205 1.205 13 H -0.160 1.160 14 C 0.300 3.700 15 O -0.471 6.471 16 C -0.106 4.106 17 H 0.122 0.878 18 C -0.133 4.133 19 C -0.120 4.120 20 C -0.057 4.057 21 C -0.141 4.141 22 C -0.141 4.141 23 C -0.148 4.148 24 C -0.135 4.135 25 C -0.107 4.107 26 C 0.100 3.900 27 H 0.091 0.909 28 O -0.351 6.351 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.120 0.880 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.139 0.861 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.135 0.865 47 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -3.861 4.265 6.658 8.799 hybrid contribution 1.183 0.199 0.876 1.486 sum -2.678 4.464 7.534 9.158 Atomic orbital electron populations 1.21753 0.96404 1.00825 1.01648 1.21462 0.95331 0.97544 1.01602 1.21885 0.96895 0.95778 1.02021 1.21481 0.93023 0.85643 1.01127 1.43596 1.60155 1.10008 1.05938 1.18828 0.98364 1.36861 0.93554 0.88607 1.25591 0.97571 0.94297 0.95316 1.69721 1.23571 1.24072 1.31720 0.87226 0.82977 0.79380 0.83348 1.20952 1.20540 1.15971 1.20239 0.78067 0.87949 0.83763 1.90514 1.54993 1.69908 1.31699 1.21093 1.01129 0.93886 0.94450 0.87789 1.21334 0.95806 0.93173 1.02963 1.20575 0.99650 0.96676 0.95113 1.19843 0.97444 0.92936 0.95460 1.21183 1.00055 0.94662 0.98248 1.21017 0.99083 0.99389 0.94618 1.20941 1.01159 0.93417 0.99242 1.20993 0.99451 0.95427 0.97623 1.20480 0.98811 0.96791 0.94644 1.20443 0.87484 0.85482 0.96555 0.90856 1.86737 1.42983 1.70212 1.35132 0.92997 0.92895 0.93336 0.92218 0.92331 0.92260 0.91940 0.91234 0.92350 0.91542 0.92608 0.87992 0.90753 0.89093 0.86088 0.86368 0.86377 0.86515 0.78950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 37.16 0.37 -1.49 16 2 C -0.12 -1.75 5.93 -26.73 -0.16 -1.91 16 3 C -0.13 -2.27 5.51 -26.73 -0.15 -2.41 16 4 C 0.11 2.30 5.37 -4.04 -0.02 2.28 16 5 N -0.48 -11.31 1.88 -114.81 -0.22 -11.52 16 6 C -0.35 -8.78 7.72 -14.94 -0.12 -8.90 16 7 H 0.10 2.53 8.06 -52.48 -0.42 2.11 16 8 C 0.08 2.10 4.12 -17.47 -0.07 2.02 16 9 N -0.86 -22.75 13.96 55.50 0.77 -21.98 16 10 Si 0.85 21.45 25.23 -169.99 -4.29 17.16 16 11 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 13 H -0.24 -6.33 5.44 56.52 0.31 -6.02 16 14 C 0.51 12.38 4.38 -10.99 -0.05 12.33 16 15 O -0.59 -15.20 15.30 4.99 0.08 -15.13 16 16 C -0.08 -1.87 0.94 -91.74 -0.09 -1.96 16 17 H 0.10 2.55 3.51 -51.93 -0.18 2.36 16 18 C -0.10 -1.84 5.15 -26.69 -0.14 -1.98 16 19 C -0.08 -1.43 5.67 -28.05 -0.16 -1.59 16 20 C -0.06 -0.95 5.74 -104.62 -0.60 -1.55 16 21 C -0.12 -1.77 9.61 -39.45 -0.38 -2.15 16 22 C -0.12 -1.58 10.05 -39.69 -0.40 -1.98 16 23 C -0.13 -1.68 10.05 -39.68 -0.40 -2.08 16 24 C -0.12 -1.71 9.20 -39.44 -0.36 -2.08 16 25 C -0.11 -1.86 5.57 -104.62 -0.58 -2.44 16 26 C 0.16 3.16 2.46 -28.05 -0.07 3.09 16 27 H 0.07 1.46 7.63 -51.93 -0.40 1.07 16 28 O -0.55 -11.04 12.61 -35.78 -0.45 -11.49 16 29 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.07 1.39 8.00 -51.93 -0.42 0.97 16 37 H 0.06 1.26 7.51 -51.93 -0.39 0.87 16 38 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 40 H 0.10 2.12 6.72 -51.93 -0.35 1.77 16 41 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 42 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 43 H 0.12 1.47 8.05 -52.48 -0.42 1.04 16 44 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.12 1.43 6.60 -52.48 -0.35 1.08 16 47 H 0.36 5.42 7.30 45.56 0.33 5.75 16 LS Contribution 365.18 15.07 5.50 5.50 Total: -1.00 -30.43 365.18 -8.86 -39.30 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -6.89 Total: 10.94 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -3.37 Total: -12.79 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.56 Total: -33.50 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.37 Total: -26.62 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.29 Total: 17.16 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.43 -8.86 -39.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183392702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.150 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds