Wall clock time and date at job start Tue Mar 31 2020 12:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46944 * 2 1 4 4 C 1.53002 * 109.47301 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47541 * 179.97438 * 4 3 2 6 6 C 1.37095 * 120.00381 * 265.21269 * 5 4 3 7 7 H 1.08006 * 119.99762 * 55.55780 * 6 5 4 8 8 C 1.38946 * 120.00070 * 235.56864 * 6 5 4 9 9 N 1.31418 * 119.99910 * 198.35499 * 8 6 5 10 10 Si 1.86796 * 120.00308 * 18.35467 * 8 6 5 11 11 H 1.48499 * 109.47248 * 94.56560 * 10 8 6 12 12 H 1.48500 * 109.47134 * 214.56974 * 10 8 6 13 13 H 1.48505 * 109.46879 * 334.56575 * 10 8 6 14 14 C 1.34780 * 120.00054 * 85.21167 * 5 4 3 15 15 O 1.21297 * 119.99914 * 4.40431 * 14 5 4 16 16 C 1.50697 * 119.99905 * 184.40377 * 14 5 4 17 17 H 1.08998 * 109.68208 * 311.05260 * 16 14 5 18 18 C 1.53333 * 109.68139 * 71.57850 * 16 14 5 19 19 C 1.52738 * 108.37979 * 189.60510 * 18 16 14 20 20 C 1.50636 * 110.58548 * 308.90460 * 19 18 16 21 21 C 1.38912 * 117.74700 * 197.48675 * 20 19 18 22 22 C 1.37927 * 120.54896 * 180.28886 * 21 20 19 23 23 C 1.38264 * 119.76743 * 0.09165 * 22 21 20 24 24 C 1.37932 * 119.77325 * 0.17366 * 23 22 21 25 25 C 1.37656 * 122.56722 * 17.71066 * 20 19 18 26 26 C 1.50631 * 122.56714 * 359.37727 * 25 20 19 27 27 H 1.09001 * 109.22080 * 257.43968 * 26 25 20 28 28 O 1.42901 * 109.25229 * 137.99568 * 26 25 20 29 29 H 1.09007 * 109.46963 * 300.00212 * 1 2 3 30 30 H 1.09001 * 109.46766 * 59.99858 * 1 2 3 31 31 H 1.08994 * 109.47010 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47220 * 240.00212 * 2 1 3 33 33 H 1.09002 * 109.47347 * 119.99400 * 2 1 3 34 34 H 1.09002 * 109.47757 * 60.00469 * 3 2 1 35 35 H 1.09001 * 109.47505 * 299.99689 * 3 2 1 36 36 H 1.08999 * 109.47145 * 59.99507 * 4 3 2 37 37 H 1.09003 * 109.47015 * 300.00239 * 4 3 2 38 38 H 0.96999 * 119.99858 * 180.02562 * 9 8 6 39 39 H 1.09004 * 109.68238 * 69.88343 * 18 16 14 40 40 H 1.08996 * 109.70840 * 309.34670 * 18 16 14 41 41 H 1.08999 * 109.25013 * 188.62341 * 19 18 16 42 42 H 1.08992 * 109.25220 * 69.19521 * 19 18 16 43 43 H 1.08008 * 119.72275 * 0.31186 * 21 20 19 44 44 H 1.07997 * 120.11848 * 180.02562 * 22 21 20 45 45 H 1.08000 * 120.11233 * 179.89991 * 23 22 21 46 46 H 1.08004 * 119.72743 * 179.64731 * 24 23 22 47 47 H 0.96701 * 114.00631 * 58.89586 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.3798 3.4367 -1.1847 7 1 3.6496 3.4950 -1.9784 8 6 5.6449 3.9827 -1.3630 9 7 5.8512 4.8664 -2.3137 10 14 7.0527 3.4609 -0.2517 11 1 7.8134 2.3622 -0.8992 12 1 7.9546 4.6174 -0.0191 13 1 6.5090 2.9882 1.0469 14 6 4.1916 3.4919 1.1616 15 8 3.9840 2.9254 2.2139 16 6 4.5985 4.9429 1.1545 17 1 5.4703 5.0766 0.5140 18 6 3.4394 5.8018 0.6352 19 6 3.9547 7.2223 0.4122 20 6 4.6684 7.7255 1.6396 21 6 4.8705 9.0950 1.7543 22 6 5.5228 9.6179 2.8513 23 6 5.9814 8.7726 3.8447 24 6 5.7865 7.4119 3.7301 25 6 5.1220 6.8841 2.6302 26 6 4.9305 5.3910 2.5765 27 1 4.1142 5.1097 3.2419 28 8 6.1314 4.7462 3.0055 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 3.9330 0.9288 -0.8908 37 1 3.9337 0.9286 0.8891 38 1 6.7345 5.2473 -2.4384 39 1 2.6340 5.8145 1.3697 40 1 3.0716 5.3927 -0.3058 41 1 3.1134 7.8791 0.1910 42 1 4.6444 7.2260 -0.4316 43 1 4.5136 9.7559 0.9782 44 1 5.6758 10.6838 2.9336 45 1 6.4943 9.1759 4.7053 46 1 6.1501 6.7518 4.5037 47 1 6.4062 4.9824 3.9020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183392702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:54 Heat of formation + Delta-G solvation = -89.253384 kcal Electronic energy + Delta-G solvation = -28234.073393 eV Core-core repulsion = 24573.283355 eV Total energy + Delta-G solvation = -3660.790037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.76340 -40.34842 -37.91897 -36.94002 -36.45207 -35.52927 -33.83340 -32.43318 -31.49928 -29.98020 -29.37477 -26.56470 -25.59431 -24.23060 -23.65086 -22.87259 -21.98184 -21.50702 -20.27119 -19.26091 -18.77834 -17.52403 -17.27854 -16.84670 -16.45126 -16.28835 -16.10206 -15.69724 -15.53317 -15.26327 -14.97889 -14.76460 -14.58379 -14.15921 -14.12653 -14.05593 -13.69647 -13.55429 -13.36082 -13.17275 -13.05095 -12.82356 -12.58542 -12.38457 -12.26603 -12.16617 -12.06248 -12.02070 -11.88870 -11.72302 -11.42140 -11.35117 -11.04845 -10.95351 -10.37931 -9.70811 -9.50621 -9.39237 -8.53741 -6.29662 0.38535 0.45402 1.16534 1.26444 1.43631 1.91268 2.16958 2.65100 2.78849 2.89184 3.32598 3.60344 3.70933 3.92596 4.00608 4.06472 4.08549 4.15576 4.19880 4.28831 4.31589 4.39904 4.44225 4.47050 4.54089 4.71506 4.73781 4.75614 4.83984 4.88896 4.93761 4.98228 4.99201 5.09306 5.11205 5.12543 5.28379 5.30429 5.31842 5.40535 5.49137 5.55916 5.58649 5.71959 5.72832 5.88307 6.10017 6.45255 6.75999 7.00135 7.37104 7.84580 8.56898 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014610 B = 0.004942 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.012642 B = 5663.999144 C = 6165.381544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.115 4.115 4 C 0.104 3.896 5 N -0.483 5.483 6 C -0.336 4.336 7 H 0.083 0.917 8 C 0.066 3.934 9 N -0.874 5.874 10 Si 0.884 3.116 11 H -0.283 1.283 12 H -0.285 1.285 13 H -0.259 1.259 14 C 0.503 3.497 15 O -0.609 6.609 16 C -0.088 4.088 17 H 0.080 0.920 18 C -0.089 4.089 19 C -0.075 4.075 20 C -0.080 4.080 21 C -0.128 4.128 22 C -0.117 4.117 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.133 4.133 26 C 0.166 3.834 27 H 0.064 0.936 28 O -0.570 6.570 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.277 0.723 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.142 0.858 44 H 0.154 0.846 45 H 0.152 0.848 46 H 0.135 0.865 47 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.045 6.164 7.855 10.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.154 4.154 4 C -0.018 4.018 5 N -0.204 5.204 6 C -0.463 4.463 7 H 0.100 0.900 8 C -0.141 4.141 9 N -0.510 5.510 10 Si 0.711 3.289 11 H -0.209 1.209 12 H -0.211 1.211 13 H -0.183 1.183 14 C 0.293 3.707 15 O -0.494 6.494 16 C -0.109 4.109 17 H 0.098 0.902 18 C -0.127 4.127 19 C -0.112 4.112 20 C -0.080 4.080 21 C -0.146 4.146 22 C -0.134 4.134 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.133 4.133 26 C 0.107 3.893 27 H 0.081 0.919 28 O -0.378 6.378 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.120 0.880 42 H 0.085 0.915 43 H 0.160 0.840 44 H 0.171 0.829 45 H 0.170 0.830 46 H 0.153 0.847 47 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -4.063 5.726 7.641 10.377 hybrid contribution 1.250 -0.240 0.629 1.420 sum -2.813 5.486 8.270 10.315 Atomic orbital electron populations 1.21724 0.94579 1.02291 1.01690 1.21440 0.96893 0.94886 1.02261 1.21759 0.94507 0.98182 1.00911 1.21665 0.95109 0.84070 1.00996 1.43751 1.60120 1.11130 1.05444 1.18636 0.97721 1.36609 0.93374 0.89966 1.25751 0.98234 0.94472 0.95605 1.69735 1.23979 1.24754 1.32532 0.86683 0.82001 0.78653 0.81608 1.20929 1.21064 1.18315 1.20712 0.77554 0.88937 0.83479 1.90478 1.56048 1.70618 1.32288 1.21112 1.00919 0.92883 0.95947 0.90193 1.21266 0.95280 0.94307 1.01861 1.20466 1.00153 0.95595 0.94960 1.19894 0.98609 0.94316 0.95203 1.21443 1.00019 0.93654 0.99478 1.21479 0.97230 1.01249 0.93481 1.21378 1.00164 0.92539 1.00198 1.21260 0.98916 0.96892 0.97185 1.20363 1.01252 0.95084 0.96628 1.20260 0.86989 0.87475 0.94622 0.91880 1.86666 1.43237 1.70982 1.36952 0.93279 0.92592 0.91154 0.91060 0.92185 0.93997 0.92297 0.90422 0.93280 0.91227 0.91587 0.90145 0.87999 0.91466 0.84031 0.82866 0.83002 0.84712 0.76639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.91 71.98 0.71 -2.67 16 2 C -0.12 -3.25 5.93 30.59 0.18 -3.07 16 3 C -0.11 -4.13 5.51 30.59 0.17 -3.96 16 4 C 0.10 4.42 5.37 86.38 0.46 4.89 16 5 N -0.48 -23.62 1.88 -635.53 -1.20 -24.82 16 6 C -0.34 -17.32 7.72 84.04 0.65 -16.67 16 7 H 0.08 4.47 8.06 -2.91 -0.02 4.44 16 8 C 0.07 3.50 4.12 84.92 0.35 3.85 16 9 N -0.87 -47.12 13.96 21.66 0.30 -46.82 16 10 Si 0.88 45.36 25.23 68.60 1.73 47.09 16 11 H -0.28 -14.27 7.11 99.48 0.71 -13.56 16 12 H -0.28 -14.67 7.11 99.48 0.71 -13.97 16 13 H -0.26 -14.20 5.44 99.48 0.54 -13.66 16 14 C 0.50 25.16 4.38 87.66 0.38 25.54 16 15 O -0.61 -32.50 15.30 -2.56 -0.04 -32.54 16 16 C -0.09 -3.98 0.94 -11.52 -0.01 -3.99 16 17 H 0.08 4.04 3.51 -2.39 -0.01 4.03 16 18 C -0.09 -3.55 5.15 30.62 0.16 -3.39 16 19 C -0.07 -2.57 5.67 29.74 0.17 -2.40 16 20 C -0.08 -2.62 5.74 -19.86 -0.11 -2.73 16 21 C -0.13 -3.32 9.61 22.36 0.21 -3.11 16 22 C -0.12 -2.53 10.05 22.20 0.22 -2.31 16 23 C -0.13 -2.77 10.05 22.20 0.22 -2.54 16 24 C -0.12 -3.40 9.20 22.36 0.21 -3.19 16 25 C -0.13 -4.55 5.57 -19.86 -0.11 -4.66 16 26 C 0.17 6.68 2.46 29.74 0.07 6.75 16 27 H 0.06 2.60 7.63 -2.39 -0.02 2.58 16 28 O -0.57 -23.41 12.61 -148.45 -1.87 -25.28 16 29 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.08 3.12 8.00 -2.39 -0.02 3.10 16 37 H 0.05 2.16 7.51 -2.39 -0.02 2.14 16 38 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 39 H 0.07 2.43 8.10 -2.39 -0.02 2.41 16 40 H 0.08 3.49 6.72 -2.39 -0.02 3.47 16 41 H 0.10 2.83 8.13 -2.39 -0.02 2.81 16 42 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 43 H 0.14 2.99 8.05 -2.91 -0.02 2.96 16 44 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 45 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 46 H 0.14 3.01 6.60 -2.91 -0.02 3.00 16 47 H 0.38 11.40 7.30 -74.06 -0.54 10.86 16 Total: -1.00 -67.02 365.18 3.12 -63.89 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.26 Total: 32.13 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 3.94 Total: -13.66 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -0.89 Total: -71.63 kcal Atomic # 8 Polarization: -55.91 SS G_CDS: -1.91 Total: -57.82 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.73 Total: 47.09 kcal Total: -67.02 3.12 -63.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183392702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.361 kcal (2) G-P(sol) polarization free energy of solvation -67.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds