Wall clock time and date at job start Tue Mar 31 2020 12:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47011 * 2 1 4 4 C 1.52994 * 109.47432 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47688 * 180.02562 * 4 3 2 6 6 C 1.37100 * 120.00130 * 93.91267 * 5 4 3 7 7 H 1.07994 * 119.99915 * 221.25258 * 6 5 4 8 8 C 1.38947 * 119.99668 * 41.25310 * 6 5 4 9 9 N 1.31415 * 120.00038 * 198.59557 * 8 6 5 10 10 Si 1.86806 * 120.00334 * 18.59380 * 8 6 5 11 11 H 1.48498 * 109.47144 * 265.10389 * 10 8 6 12 12 H 1.48502 * 109.46871 * 25.10369 * 10 8 6 13 13 H 1.48499 * 109.47184 * 145.10327 * 10 8 6 14 14 C 1.34773 * 119.99904 * 273.92183 * 5 4 3 15 15 O 1.21291 * 120.00356 * 354.43314 * 14 5 4 16 16 C 1.50702 * 119.99941 * 174.44246 * 14 5 4 17 17 H 1.09003 * 109.67562 * 322.87102 * 16 14 5 18 18 C 1.53321 * 109.68327 * 83.39241 * 16 14 5 19 19 C 1.52743 * 108.38185 * 189.59337 * 18 16 14 20 20 C 1.50631 * 110.59072 * 308.89295 * 19 18 16 21 21 C 1.38903 * 117.75614 * 197.73064 * 20 19 18 22 22 C 1.37935 * 120.54744 * 180.24486 * 21 20 19 23 23 C 1.38272 * 119.76932 * 0.03106 * 22 21 20 24 24 C 1.37930 * 119.76885 * 359.88867 * 23 22 21 25 25 C 1.37666 * 122.55948 * 17.79633 * 20 19 18 26 26 C 1.50642 * 122.58000 * 359.28044 * 25 20 19 27 27 H 1.08991 * 109.28593 * 138.03854 * 26 25 20 28 28 O 1.42902 * 109.23140 * 257.47332 * 26 25 20 29 29 H 1.08999 * 109.47151 * 59.99894 * 1 2 3 30 30 H 1.08997 * 109.46632 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46860 * 299.99341 * 1 2 3 32 32 H 1.08996 * 109.46860 * 240.00659 * 2 1 3 33 33 H 1.08999 * 109.47151 * 120.00106 * 2 1 3 34 34 H 1.09004 * 109.46576 * 60.00284 * 3 2 1 35 35 H 1.08999 * 109.47182 * 300.00597 * 3 2 1 36 36 H 1.09005 * 109.46959 * 60.00003 * 4 3 2 37 37 H 1.09007 * 109.47282 * 300.00794 * 4 3 2 38 38 H 0.96993 * 120.00085 * 179.97438 * 9 8 6 39 39 H 1.09003 * 109.68267 * 309.31046 * 18 16 14 40 40 H 1.08991 * 109.68308 * 69.86947 * 18 16 14 41 41 H 1.09001 * 109.25201 * 69.18610 * 19 18 16 42 42 H 1.09006 * 109.24813 * 188.64705 * 19 18 16 43 43 H 1.08007 * 119.72692 * 0.25808 * 21 20 19 44 44 H 1.08001 * 120.11452 * 180.02562 * 22 21 20 45 45 H 1.07999 * 120.11283 * 179.90718 * 23 22 21 46 46 H 1.08003 * 119.72263 * 179.97438 * 24 23 22 47 47 H 0.96694 * 114.00023 * 301.07387 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.3627 3.4428 1.1861 7 1 4.0830 4.4738 1.3441 8 6 5.0311 2.7434 2.1835 9 7 5.0061 3.1810 3.4224 10 14 5.9651 1.1811 1.7635 11 1 5.0952 0.0030 2.0094 12 1 6.3639 1.2122 0.3334 13 1 7.1788 1.0863 2.6139 14 6 4.2082 3.4861 -1.1629 15 8 4.0362 2.9087 -2.2156 16 6 4.5897 4.9440 -1.1568 17 1 4.0979 5.4485 -0.3251 18 6 6.1105 5.0792 -1.0164 19 6 6.4428 6.5500 -0.7725 20 6 5.7823 7.4213 -1.8086 21 6 6.2654 8.7135 -1.9704 22 6 5.6999 9.5622 -2.8991 23 6 4.6429 9.1241 -3.6755 24 6 4.1628 7.8408 -3.5175 25 6 4.7327 6.9837 -2.5846 26 6 4.1671 5.5919 -2.4738 27 1 3.0792 5.6409 -2.5175 28 8 4.6464 4.8009 -3.5631 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8901 35 1 1.6766 1.9564 -0.8899 36 1 3.9337 0.9287 -0.8892 37 1 3.9330 0.9288 0.8908 38 1 5.4723 2.6926 4.1188 39 1 6.4561 4.4802 -0.1739 40 1 6.5952 4.7403 -1.9319 41 1 6.0901 6.8387 0.2177 42 1 7.5229 6.6876 -0.8235 43 1 7.0908 9.0565 -1.3641 44 1 6.0814 10.5654 -3.0194 45 1 4.1950 9.7845 -4.4033 46 1 3.3369 7.4995 -4.1240 47 1 4.4160 5.1508 -4.4346 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183392705.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:04 Heat of formation + Delta-G solvation = -69.284654 kcal Electronic energy + Delta-G solvation = -27734.819504 eV Core-core repulsion = 24074.895376 eV Total energy + Delta-G solvation = -3659.924128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.25566 -38.71471 -36.57744 -35.22740 -34.63242 -33.89293 -31.81289 -31.40903 -30.29857 -28.62048 -28.02339 -24.82030 -24.08736 -22.98244 -22.36821 -21.92254 -20.70364 -19.48816 -18.72939 -17.30250 -16.62862 -16.30548 -16.01894 -15.24295 -14.97849 -14.74643 -14.71037 -14.21777 -14.16141 -13.70003 -13.60560 -13.28424 -13.07035 -12.98022 -12.62879 -12.51297 -12.19984 -12.09769 -11.79941 -11.72826 -11.56882 -11.35293 -11.22007 -11.06088 -10.77995 -10.66446 -10.54976 -10.50778 -10.26739 -9.99050 -9.85466 -9.74155 -9.54168 -9.08905 -8.73058 -8.49420 -8.31786 -7.64459 -6.43595 -4.06781 1.40836 1.46136 3.08073 3.23900 3.34184 3.80328 3.82171 4.16567 4.35317 4.77327 4.86576 4.93241 5.00265 5.02803 5.09090 5.35385 5.38003 5.38825 5.45216 5.49399 5.54698 5.61575 5.76090 5.84682 5.86672 5.93039 6.10899 6.13786 6.14396 6.18305 6.22927 6.26295 6.28439 6.32296 6.37794 6.45952 6.52746 6.54546 6.54997 6.78707 6.82411 6.84549 6.88663 6.94876 7.09906 7.47204 8.10574 8.15145 8.29343 9.02774 9.44172 9.79379 10.67052 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.004519 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.419791 B = 6193.973103 C = 7403.393293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.105 3.895 5 N -0.474 5.474 6 C -0.339 4.339 7 H 0.102 0.898 8 C 0.069 3.931 9 N -0.866 5.866 10 Si 0.872 3.128 11 H -0.275 1.275 12 H -0.260 1.260 13 H -0.289 1.289 14 C 0.493 3.507 15 O -0.567 6.567 16 C -0.079 4.079 17 H 0.102 0.898 18 C -0.099 4.099 19 C -0.083 4.083 20 C -0.051 4.051 21 C -0.126 4.126 22 C -0.120 4.120 23 C -0.131 4.131 24 C -0.115 4.115 25 C -0.110 4.110 26 C 0.163 3.837 27 H 0.056 0.944 28 O -0.521 6.521 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.273 0.727 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.328 7.027 -8.647 11.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.164 4.164 4 C -0.018 4.018 5 N -0.196 5.196 6 C -0.466 4.466 7 H 0.119 0.881 8 C -0.138 4.138 9 N -0.502 5.502 10 Si 0.699 3.301 11 H -0.202 1.202 12 H -0.184 1.184 13 H -0.216 1.216 14 C 0.281 3.719 15 O -0.449 6.449 16 C -0.100 4.100 17 H 0.120 0.880 18 C -0.137 4.137 19 C -0.120 4.120 20 C -0.051 4.051 21 C -0.144 4.144 22 C -0.138 4.138 23 C -0.149 4.149 24 C -0.133 4.133 25 C -0.110 4.110 26 C 0.103 3.897 27 H 0.074 0.926 28 O -0.323 6.323 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.115 6.333 -8.461 10.627 hybrid contribution 0.251 -0.236 -0.253 0.428 sum -0.864 6.097 -8.714 10.670 Atomic orbital electron populations 1.21739 0.96236 1.00842 1.01687 1.21483 0.95507 0.97586 1.01583 1.21854 0.96328 0.95870 1.02310 1.21564 0.93686 0.85703 1.00867 1.43739 1.58289 1.11648 1.05928 1.18995 1.37528 0.99578 0.90493 0.88098 1.25319 0.95843 0.97868 0.94741 1.69733 1.40268 1.40425 0.99751 0.86994 0.79924 0.83417 0.79729 1.20203 1.18446 1.21622 1.20150 0.79514 0.88712 0.83507 1.90586 1.54000 1.69243 1.31042 1.21109 0.98348 0.94982 0.95549 0.88010 1.21331 0.93997 0.95184 1.03204 1.20582 0.99679 0.94492 0.97242 1.19813 0.94624 0.94317 0.96324 1.21203 1.00582 0.93624 0.99034 1.21044 0.96792 0.99410 0.96529 1.20979 0.97667 0.96050 1.00254 1.21143 0.99853 0.94008 0.98268 1.20442 0.96677 0.97020 0.96878 1.20335 0.95885 0.85068 0.88375 0.92587 1.86936 1.79889 1.50592 1.14923 0.92969 0.93316 0.92802 0.92320 0.92294 0.91384 0.92191 0.91777 0.91792 0.91648 0.89507 0.91365 0.89789 0.90778 0.86174 0.86377 0.86378 0.86387 0.79741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.99 5.93 -26.73 -0.16 -2.14 16 3 C -0.12 -2.42 5.52 -26.73 -0.15 -2.57 16 4 C 0.10 2.34 4.04 -4.05 -0.02 2.33 16 5 N -0.47 -11.29 2.13 -114.81 -0.24 -11.53 16 6 C -0.34 -8.52 8.27 -14.93 -0.12 -8.64 16 7 H 0.10 2.64 6.77 -52.49 -0.36 2.29 16 8 C 0.07 1.78 5.32 -17.47 -0.09 1.69 16 9 N -0.87 -23.42 13.96 55.50 0.77 -22.65 16 10 Si 0.87 20.55 24.98 -169.99 -4.25 16.31 16 11 H -0.28 -6.29 6.72 56.52 0.38 -5.91 16 12 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 14 C 0.49 11.44 6.72 -10.99 -0.07 11.37 16 15 O -0.57 -14.27 14.22 -17.62 -0.25 -14.52 16 16 C -0.08 -1.55 1.67 -91.74 -0.15 -1.71 16 17 H 0.10 2.03 6.64 -51.93 -0.34 1.68 16 18 C -0.10 -1.85 5.17 -26.70 -0.14 -1.98 16 19 C -0.08 -1.27 5.67 -28.05 -0.16 -1.43 16 20 C -0.05 -0.75 5.74 -104.62 -0.60 -1.35 16 21 C -0.13 -1.61 9.61 -39.45 -0.38 -1.99 16 22 C -0.12 -1.37 10.05 -39.68 -0.40 -1.77 16 23 C -0.13 -1.50 10.05 -39.68 -0.40 -1.90 16 24 C -0.11 -1.46 9.51 -39.44 -0.38 -1.83 16 25 C -0.11 -1.66 5.32 -104.61 -0.56 -2.21 16 26 C 0.16 2.81 2.81 -28.04 -0.08 2.73 16 27 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 28 O -0.52 -9.43 10.62 -58.40 -0.62 -10.05 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.45 7.47 -51.93 -0.39 1.06 16 37 H 0.06 1.47 3.68 -51.93 -0.19 1.27 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.09 1.77 7.38 -51.93 -0.38 1.39 16 40 H 0.07 1.32 7.66 -51.93 -0.40 0.92 16 41 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 43 H 0.12 1.29 8.05 -52.48 -0.42 0.87 16 44 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.12 1.27 8.05 -52.48 -0.42 0.85 16 47 H 0.36 4.84 8.97 45.56 0.41 5.25 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -30.06 368.65 -9.24 -39.29 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -6.73 Total: 10.65 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -3.48 Total: -13.06 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.53 Total: -34.18 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.87 Total: -24.57 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.25 Total: 16.31 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.06 -9.24 -39.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183392705.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.990 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds