Wall clock time and date at job start Tue Mar 31 2020 12:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47011 * 2 1 4 4 C 1.52994 * 109.47432 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47688 * 180.02562 * 4 3 2 6 6 C 1.37100 * 120.00130 * 93.91267 * 5 4 3 7 7 H 1.07994 * 119.99915 * 221.25258 * 6 5 4 8 8 C 1.38947 * 119.99668 * 41.25310 * 6 5 4 9 9 N 1.31415 * 120.00038 * 198.59557 * 8 6 5 10 10 Si 1.86806 * 120.00334 * 18.59380 * 8 6 5 11 11 H 1.48498 * 109.47144 * 265.10389 * 10 8 6 12 12 H 1.48502 * 109.46871 * 25.10369 * 10 8 6 13 13 H 1.48499 * 109.47184 * 145.10327 * 10 8 6 14 14 C 1.34773 * 119.99904 * 273.92183 * 5 4 3 15 15 O 1.21291 * 120.00356 * 354.43314 * 14 5 4 16 16 C 1.50702 * 119.99941 * 174.44246 * 14 5 4 17 17 H 1.09003 * 109.67562 * 322.87102 * 16 14 5 18 18 C 1.53321 * 109.68327 * 83.39241 * 16 14 5 19 19 C 1.52743 * 108.38185 * 189.59337 * 18 16 14 20 20 C 1.50631 * 110.59072 * 308.89295 * 19 18 16 21 21 C 1.38903 * 117.75614 * 197.73064 * 20 19 18 22 22 C 1.37935 * 120.54744 * 180.24486 * 21 20 19 23 23 C 1.38272 * 119.76932 * 0.03106 * 22 21 20 24 24 C 1.37930 * 119.76885 * 359.88867 * 23 22 21 25 25 C 1.37666 * 122.55948 * 17.79633 * 20 19 18 26 26 C 1.50642 * 122.58000 * 359.28044 * 25 20 19 27 27 H 1.08991 * 109.28593 * 138.03854 * 26 25 20 28 28 O 1.42902 * 109.23140 * 257.47332 * 26 25 20 29 29 H 1.08999 * 109.47151 * 59.99894 * 1 2 3 30 30 H 1.08997 * 109.46632 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46860 * 299.99341 * 1 2 3 32 32 H 1.08996 * 109.46860 * 240.00659 * 2 1 3 33 33 H 1.08999 * 109.47151 * 120.00106 * 2 1 3 34 34 H 1.09004 * 109.46576 * 60.00284 * 3 2 1 35 35 H 1.08999 * 109.47182 * 300.00597 * 3 2 1 36 36 H 1.09005 * 109.46959 * 60.00003 * 4 3 2 37 37 H 1.09007 * 109.47282 * 300.00794 * 4 3 2 38 38 H 0.96993 * 120.00085 * 179.97438 * 9 8 6 39 39 H 1.09003 * 109.68267 * 309.31046 * 18 16 14 40 40 H 1.08991 * 109.68308 * 69.86947 * 18 16 14 41 41 H 1.09001 * 109.25201 * 69.18610 * 19 18 16 42 42 H 1.09006 * 109.24813 * 188.64705 * 19 18 16 43 43 H 1.08007 * 119.72692 * 0.25808 * 21 20 19 44 44 H 1.08001 * 120.11452 * 180.02562 * 22 21 20 45 45 H 1.07999 * 120.11283 * 179.90718 * 23 22 21 46 46 H 1.08003 * 119.72263 * 179.97438 * 24 23 22 47 47 H 0.96694 * 114.00023 * 301.07387 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.3627 3.4428 1.1861 7 1 4.0830 4.4738 1.3441 8 6 5.0311 2.7434 2.1835 9 7 5.0061 3.1810 3.4224 10 14 5.9651 1.1811 1.7635 11 1 5.0952 0.0030 2.0094 12 1 6.3639 1.2122 0.3334 13 1 7.1788 1.0863 2.6139 14 6 4.2082 3.4861 -1.1629 15 8 4.0362 2.9087 -2.2156 16 6 4.5897 4.9440 -1.1568 17 1 4.0979 5.4485 -0.3251 18 6 6.1105 5.0792 -1.0164 19 6 6.4428 6.5500 -0.7725 20 6 5.7823 7.4213 -1.8086 21 6 6.2654 8.7135 -1.9704 22 6 5.6999 9.5622 -2.8991 23 6 4.6429 9.1241 -3.6755 24 6 4.1628 7.8408 -3.5175 25 6 4.7327 6.9837 -2.5846 26 6 4.1671 5.5919 -2.4738 27 1 3.0792 5.6409 -2.5175 28 8 4.6464 4.8009 -3.5631 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8901 35 1 1.6766 1.9564 -0.8899 36 1 3.9337 0.9287 -0.8892 37 1 3.9330 0.9288 0.8908 38 1 5.4723 2.6926 4.1188 39 1 6.4561 4.4802 -0.1739 40 1 6.5952 4.7403 -1.9319 41 1 6.0901 6.8387 0.2177 42 1 7.5229 6.6876 -0.8235 43 1 7.0908 9.0565 -1.3641 44 1 6.0814 10.5654 -3.0194 45 1 4.1950 9.7845 -4.4033 46 1 3.3369 7.4995 -4.1240 47 1 4.4160 5.1508 -4.4346 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183392705.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:03 Heat of formation + Delta-G solvation = -85.311835 kcal Electronic energy + Delta-G solvation = -27735.514495 eV Core-core repulsion = 24074.895376 eV Total energy + Delta-G solvation = -3660.619119 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.61032 -40.28730 -37.94893 -36.91022 -36.04364 -35.46101 -33.77848 -32.54816 -31.51828 -30.01997 -29.34175 -26.78310 -25.51684 -24.28428 -23.71004 -22.97724 -22.13444 -21.03167 -20.43235 -18.85734 -18.29656 -17.69687 -17.41140 -17.04192 -16.25555 -16.18910 -15.99412 -15.75990 -15.50159 -15.25963 -14.97927 -14.67874 -14.52539 -14.41298 -14.10176 -13.99673 -13.74925 -13.40945 -13.20132 -13.13473 -13.04945 -12.85431 -12.80675 -12.27808 -12.19703 -12.09054 -12.05838 -11.95995 -11.86640 -11.79626 -11.45848 -11.23301 -11.05446 -10.87096 -10.16988 -9.70951 -9.59665 -9.51245 -8.47801 -6.11565 0.41947 0.49226 1.16462 1.29048 1.40569 1.95335 2.18671 2.60896 2.83147 2.95852 3.49189 3.67981 3.74957 3.92763 3.95062 4.02917 4.04439 4.17634 4.21457 4.25197 4.27381 4.33185 4.43371 4.50156 4.55197 4.60389 4.74797 4.75596 4.76974 4.83541 4.89645 4.91643 4.98674 5.04758 5.12656 5.16630 5.21827 5.22723 5.33404 5.35807 5.41535 5.54775 5.58846 5.62596 5.77237 6.09501 6.13513 6.31350 6.94663 7.02226 7.48729 7.86624 8.66171 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.004519 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.419791 B = 6193.973103 C = 7403.393293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 C -0.115 4.115 4 C 0.099 3.901 5 N -0.484 5.484 6 C -0.329 4.329 7 H 0.084 0.916 8 C 0.038 3.962 9 N -0.897 5.897 10 Si 0.915 3.085 11 H -0.260 1.260 12 H -0.276 1.276 13 H -0.284 1.284 14 C 0.486 3.514 15 O -0.588 6.588 16 C -0.078 4.078 17 H 0.093 0.907 18 C -0.092 4.092 19 C -0.075 4.075 20 C -0.073 4.073 21 C -0.131 4.131 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.118 4.118 25 C -0.129 4.129 26 C 0.170 3.830 27 H 0.054 0.946 28 O -0.545 6.545 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.278 0.722 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.139 0.861 44 H 0.150 0.850 45 H 0.149 0.851 46 H 0.135 0.865 47 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.561 8.249 -9.876 12.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.153 4.153 4 C -0.024 4.024 5 N -0.206 5.206 6 C -0.456 4.456 7 H 0.102 0.898 8 C -0.166 4.166 9 N -0.535 5.535 10 Si 0.742 3.258 11 H -0.186 1.186 12 H -0.201 1.201 13 H -0.210 1.210 14 C 0.276 3.724 15 O -0.471 6.471 16 C -0.100 4.100 17 H 0.111 0.889 18 C -0.130 4.130 19 C -0.112 4.112 20 C -0.073 4.073 21 C -0.149 4.149 22 C -0.133 4.133 23 C -0.145 4.145 24 C -0.136 4.136 25 C -0.129 4.129 26 C 0.111 3.889 27 H 0.072 0.928 28 O -0.350 6.350 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.156 0.844 44 H 0.168 0.832 45 H 0.167 0.833 46 H 0.153 0.847 47 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.360 7.553 -9.692 12.363 hybrid contribution 0.314 -0.552 0.046 0.637 sum -1.046 7.001 -9.646 11.965 Atomic orbital electron populations 1.21706 0.94039 1.02453 1.01861 1.21483 0.97432 0.94949 1.02035 1.21750 0.94116 0.98239 1.01231 1.21674 0.95695 0.84837 1.00153 1.43895 1.58678 1.12290 1.05736 1.18840 1.37028 0.98984 0.90771 0.89838 1.25709 0.96342 0.99971 0.94585 1.69779 1.41457 1.41817 1.00415 0.86308 0.79385 0.81712 0.78431 1.18608 1.20123 1.21008 1.20784 0.78619 0.90091 0.82940 1.90554 1.54833 1.70146 1.31572 1.21103 0.99008 0.92631 0.97217 0.88855 1.21209 0.93000 0.97419 1.01336 1.20484 1.01024 0.92111 0.97572 1.19833 0.95328 0.95434 0.96724 1.21424 1.01095 0.92758 0.99638 1.21464 0.96129 1.00488 0.95245 1.21381 0.97200 0.95652 1.00286 1.21345 1.00186 0.94394 0.97718 1.20277 0.97782 0.96088 0.98770 1.20159 0.95784 0.86167 0.86792 0.92777 1.86864 1.80211 1.51730 1.16236 0.92715 0.90982 0.92770 0.91695 0.92024 0.92508 0.93070 0.92435 0.92314 0.91226 0.92148 0.92518 0.90235 0.88906 0.84360 0.83233 0.83283 0.84740 0.77606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.91 71.98 0.71 -2.92 16 2 C -0.12 -3.76 5.93 30.60 0.18 -3.58 16 3 C -0.11 -4.49 5.52 30.59 0.17 -4.32 16 4 C 0.10 4.51 4.04 86.38 0.35 4.86 16 5 N -0.48 -23.80 2.13 -635.55 -1.35 -25.15 16 6 C -0.33 -17.11 8.27 84.04 0.70 -16.42 16 7 H 0.08 4.59 6.77 -2.91 -0.02 4.57 16 8 C 0.04 2.00 5.32 84.93 0.45 2.45 16 9 N -0.90 -49.33 13.96 21.66 0.30 -49.03 16 10 Si 0.91 42.86 24.98 68.60 1.71 44.57 16 11 H -0.26 -11.49 6.72 99.48 0.67 -10.82 16 12 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 13 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 14 C 0.49 23.40 6.72 87.66 0.59 23.99 16 15 O -0.59 -30.42 14.22 19.09 0.27 -30.15 16 16 C -0.08 -3.22 1.67 -11.52 -0.02 -3.24 16 17 H 0.09 3.93 6.64 -2.39 -0.02 3.91 16 18 C -0.09 -3.55 5.17 30.62 0.16 -3.39 16 19 C -0.08 -2.32 5.67 29.74 0.17 -2.15 16 20 C -0.07 -2.10 5.74 -19.86 -0.11 -2.22 16 21 C -0.13 -3.01 9.61 22.36 0.21 -2.80 16 22 C -0.12 -2.20 10.05 22.21 0.22 -1.98 16 23 C -0.13 -2.44 10.05 22.20 0.22 -2.21 16 24 C -0.12 -2.75 9.51 22.36 0.21 -2.54 16 25 C -0.13 -3.79 5.32 -19.86 -0.11 -3.90 16 26 C 0.17 5.96 2.81 29.74 0.08 6.04 16 27 H 0.05 1.86 8.13 -2.39 -0.02 1.84 16 28 O -0.54 -19.95 10.62 -126.83 -1.35 -21.29 16 29 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.06 2.66 7.47 -2.38 -0.02 2.64 16 37 H 0.06 2.71 3.68 -2.38 -0.01 2.70 16 38 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 39 H 0.06 2.60 7.38 -2.39 -0.02 2.59 16 40 H 0.06 2.29 7.66 -2.39 -0.02 2.27 16 41 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.09 2.45 8.12 -2.38 -0.02 2.43 16 43 H 0.14 2.58 8.05 -2.91 -0.02 2.56 16 44 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 45 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 46 H 0.13 2.58 8.05 -2.91 -0.02 2.55 16 47 H 0.38 10.08 8.97 -74.06 -0.66 9.42 16 Total: -1.00 -65.73 368.65 4.05 -61.69 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: 0.26 Total: 33.68 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 4.19 Total: -14.31 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -1.05 Total: -74.19 kcal Atomic # 8 Polarization: -50.37 SS G_CDS: -1.07 Total: -51.44 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.71 Total: 44.57 kcal Total: -65.73 4.05 -61.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183392705.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.625 kcal (2) G-P(sol) polarization free energy of solvation -65.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds