Wall clock time and date at job start Tue Mar 31 2020 12:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47117 * 2 1 4 4 C 1.52994 * 109.47117 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46776 * 179.97438 * 4 3 2 6 6 C 1.37094 * 120.00262 * 264.48309 * 5 4 3 7 7 H 1.08005 * 120.00242 * 145.75950 * 6 5 4 8 8 C 1.38955 * 120.00290 * 325.76138 * 6 5 4 9 9 N 1.31411 * 120.00089 * 157.91031 * 8 6 5 10 10 Si 1.86797 * 119.99631 * 337.91228 * 8 6 5 11 11 H 1.48495 * 109.47341 * 94.67049 * 10 8 6 12 12 H 1.48498 * 109.47092 * 214.67029 * 10 8 6 13 13 H 1.48502 * 109.47274 * 334.66899 * 10 8 6 14 14 C 1.34781 * 120.00187 * 84.48976 * 5 4 3 15 15 O 1.21294 * 119.99460 * 359.97438 * 14 5 4 16 16 C 1.50704 * 120.00263 * 179.97438 * 14 5 4 17 17 C 1.53771 * 113.61434 * 80.86066 * 16 14 5 18 18 C 1.53957 * 87.02072 * 89.22663 * 17 16 14 19 19 O 1.42908 * 113.73931 * 139.94074 * 18 17 16 20 20 C 1.35899 * 116.99752 * 102.48698 * 19 18 17 21 21 C 1.38729 * 120.05372 * 175.08515 * 20 19 18 22 22 C 1.38149 * 119.94443 * 179.74443 * 21 20 19 23 23 C 1.38272 * 120.05056 * 0.51190 * 22 21 20 24 24 C 1.38262 * 120.11472 * 359.76672 * 23 22 21 25 25 C 1.38142 * 120.05513 * 359.97438 * 24 23 22 26 26 C 1.53777 * 87.11049 * 25.36403 * 18 17 16 27 27 H 1.09001 * 109.47519 * 299.99517 * 1 2 3 28 28 H 1.09000 * 109.47374 * 60.00426 * 1 2 3 29 29 H 1.09007 * 109.46973 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47500 * 239.99866 * 2 1 3 31 31 H 1.09000 * 109.47374 * 119.99574 * 2 1 3 32 32 H 1.08992 * 109.47045 * 59.99587 * 3 2 1 33 33 H 1.09000 * 109.46651 * 300.00017 * 3 2 1 34 34 H 1.09002 * 109.46996 * 59.99930 * 4 3 2 35 35 H 1.09000 * 109.47374 * 299.99574 * 4 3 2 36 36 H 0.97000 * 119.99639 * 180.02562 * 9 8 6 37 37 H 1.08996 * 112.84406 * 309.66280 * 16 14 5 38 38 H 1.09004 * 113.61773 * 203.74880 * 17 16 14 39 39 H 1.09005 * 113.62103 * 334.65347 * 17 16 14 40 40 H 1.08991 * 113.53967 * 270.80643 * 18 17 16 41 41 H 1.07994 * 120.03135 * 359.97438 * 21 20 19 42 42 H 1.07994 * 119.97485 * 180.23107 * 22 21 20 43 43 H 1.08002 * 119.93681 * 179.74402 * 23 22 21 44 44 H 1.08003 * 119.97233 * 180.02562 * 24 23 22 45 45 H 1.07998 * 120.02748 * 179.97438 * 25 24 23 46 46 H 1.09001 * 113.61212 * 220.09433 * 26 18 17 47 47 H 1.08998 * 113.61547 * 89.18333 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0581 2.8238 -0.0013 6 6 4.3937 3.4317 -1.1833 7 1 4.2203 4.4896 -1.3148 8 6 4.9570 2.6869 -2.2123 9 7 4.8839 3.1179 -3.4516 10 14 5.8180 1.0730 -1.8339 11 1 4.8634 -0.0507 -2.0107 12 1 6.9670 0.8964 -2.7580 13 1 6.3083 1.0902 -0.4323 14 6 4.1776 3.4969 1.1603 15 8 3.8803 2.9591 2.2061 16 6 4.6804 4.9176 1.1597 17 6 3.6008 5.9529 0.8033 18 6 3.2768 6.0140 2.3071 19 8 3.0031 7.3333 2.7836 20 6 1.6993 7.6568 2.9891 21 6 1.3673 8.8830 3.5467 22 6 0.0409 9.2117 3.7498 23 6 -0.9548 8.3154 3.4076 24 6 -0.6263 7.0903 2.8572 25 6 0.6983 6.7591 2.6472 26 6 4.7233 5.5563 2.5580 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.9329 0.9288 -0.8909 35 1 3.9337 0.9287 0.8891 36 1 5.2768 2.5978 -4.1699 37 1 5.6051 5.0390 0.5956 38 1 4.0035 6.8844 0.4052 39 1 2.7903 5.5479 0.1973 40 1 2.5280 5.2869 2.6210 41 1 2.1448 9.5815 3.8182 42 1 -0.2182 10.1676 4.1803 43 1 -1.9909 8.5726 3.5711 44 1 -1.4059 6.3921 2.5904 45 1 0.9545 5.8019 2.2176 46 1 4.8179 4.8314 3.3665 47 1 5.4335 6.3791 2.6405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186865788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:21 Heat of formation + Delta-G solvation = -26.216959 kcal Electronic energy + Delta-G solvation = -27046.001703 eV Core-core repulsion = 23387.945131 eV Total energy + Delta-G solvation = -3658.056573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.46572 -39.32042 -37.72343 -36.11680 -35.03800 -34.08113 -31.95651 -30.96873 -29.75217 -28.87046 -25.85298 -25.39431 -24.81042 -23.52441 -22.53463 -21.90623 -20.79885 -20.19652 -18.49575 -18.34929 -16.76473 -16.46918 -15.95658 -15.70440 -15.32633 -15.13477 -14.84377 -14.52769 -14.36043 -14.14795 -13.75734 -13.41357 -13.20135 -13.14763 -12.71561 -12.54554 -12.36674 -12.21179 -11.94260 -11.82819 -11.70017 -11.48785 -11.36454 -11.21469 -11.04114 -10.74200 -10.66318 -10.60468 -10.40065 -10.14587 -10.01083 -9.90959 -9.78016 -9.22948 -8.98216 -8.62820 -8.08497 -7.91614 -6.56561 -4.12301 1.36250 1.49393 2.97479 3.15826 3.22960 3.41948 3.57590 3.82712 4.03679 4.21822 4.78938 4.85714 4.88350 4.90771 4.99317 5.10145 5.22393 5.29592 5.31891 5.36190 5.40825 5.44592 5.48726 5.67746 5.73509 5.86559 6.00777 6.02294 6.06783 6.10396 6.12147 6.17733 6.19090 6.27101 6.34922 6.37446 6.38661 6.41235 6.46380 6.49821 6.54370 6.61148 6.73324 6.84576 6.86829 7.26656 7.63099 7.98388 8.18266 8.86439 9.27481 9.60369 10.53834 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.003884 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.000140 B = 7206.534984 C = 8287.924908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.101 3.899 5 N -0.455 5.455 6 C -0.346 4.346 7 H 0.110 0.890 8 C 0.068 3.932 9 N -0.855 5.855 10 Si 0.875 3.125 11 H -0.274 1.274 12 H -0.288 1.288 13 H -0.262 1.262 14 C 0.488 3.512 15 O -0.598 6.598 16 C -0.107 4.107 17 C -0.132 4.132 18 C 0.055 3.945 19 O -0.304 6.304 20 C 0.138 3.862 21 C -0.160 4.160 22 C -0.085 4.085 23 C -0.168 4.168 24 C -0.079 4.079 25 C -0.207 4.207 26 C -0.112 4.112 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.276 0.724 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.131 0.869 46 H 0.087 0.913 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.333 5.087 8.655 12.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.164 4.164 4 C -0.022 4.022 5 N -0.174 5.174 6 C -0.473 4.473 7 H 0.127 0.873 8 C -0.140 4.140 9 N -0.490 5.490 10 Si 0.703 3.297 11 H -0.201 1.201 12 H -0.215 1.215 13 H -0.186 1.186 14 C 0.277 3.723 15 O -0.484 6.484 16 C -0.128 4.128 17 C -0.171 4.171 18 C -0.001 4.001 19 O -0.218 6.218 20 C 0.093 3.907 21 C -0.179 4.179 22 C -0.103 4.103 23 C -0.186 4.186 24 C -0.098 4.098 25 C -0.225 4.225 26 C -0.149 4.149 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.120 0.880 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.149 0.851 46 H 0.106 0.894 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.241 4.896 8.944 12.506 hybrid contribution 0.404 -1.062 -0.386 1.200 sum -6.837 3.834 8.558 11.605 Atomic orbital electron populations 1.21737 0.96123 1.00922 1.01727 1.21478 0.95623 0.97436 1.01615 1.21836 0.95944 0.96086 1.02494 1.21669 0.94144 0.85268 1.01095 1.43732 1.56001 1.11486 1.06199 1.19170 1.42131 0.96908 0.89059 0.87277 1.25304 0.95820 0.98233 0.94666 1.69763 1.40603 1.39743 0.98883 0.87004 0.79657 0.83565 0.79451 1.20089 1.21547 1.18624 1.19787 0.81303 0.87998 0.83162 1.90537 1.55668 1.70528 1.31690 1.21835 1.01094 0.92590 0.97295 1.23408 0.99233 0.99172 0.95247 1.24411 0.98629 0.81705 0.95335 1.86139 1.21902 1.33467 1.80280 1.19109 0.83719 0.93902 0.94015 1.20445 0.96911 0.95927 1.04627 1.20914 0.91908 0.99103 0.98357 1.21005 0.99216 0.94937 1.03428 1.20964 0.95576 0.96432 0.96789 1.21412 0.93359 1.01019 1.06746 1.23063 0.94075 0.99658 0.98130 0.92930 0.92773 0.93246 0.92276 0.92278 0.91924 0.91328 0.91455 0.91636 0.91403 0.87292 0.88796 0.90348 0.88020 0.85460 0.85742 0.86257 0.85981 0.85118 0.89439 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.15 0.37 -1.59 16 2 C -0.12 -1.93 5.93 -26.73 -0.16 -2.09 16 3 C -0.13 -2.36 5.50 -26.73 -0.15 -2.51 16 4 C 0.10 2.18 3.97 -4.05 -0.02 2.17 16 5 N -0.46 -10.50 2.25 -114.81 -0.26 -10.76 16 6 C -0.35 -8.56 9.04 -14.93 -0.14 -8.69 16 7 H 0.11 2.79 6.70 -52.48 -0.35 2.44 16 8 C 0.07 1.72 5.30 -17.47 -0.09 1.62 16 9 N -0.86 -22.78 13.96 55.50 0.77 -22.00 16 10 Si 0.88 19.94 24.89 -169.99 -4.23 15.71 16 11 H -0.27 -5.99 6.63 56.52 0.37 -5.61 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 14 C 0.49 10.78 6.84 -10.98 -0.08 10.70 16 15 O -0.60 -14.11 15.50 5.55 0.09 -14.03 16 16 C -0.11 -2.00 3.09 -90.96 -0.28 -2.28 16 17 C -0.13 -2.27 6.75 -25.83 -0.17 -2.44 16 18 C 0.05 0.90 3.27 -25.83 -0.08 0.82 16 19 O -0.30 -4.88 10.15 -19.42 -0.20 -5.08 16 20 C 0.14 2.07 6.68 -39.22 -0.26 1.81 16 21 C -0.16 -2.06 9.99 -39.43 -0.39 -2.46 16 22 C -0.08 -0.93 10.04 -39.60 -0.40 -1.33 16 23 C -0.17 -1.86 10.04 -39.56 -0.40 -2.26 16 24 C -0.08 -0.99 10.04 -39.61 -0.40 -1.38 16 25 C -0.21 -2.99 9.02 -39.43 -0.36 -3.35 16 26 C -0.11 -1.83 7.29 -25.92 -0.19 -2.02 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.07 1.49 3.07 -51.93 -0.16 1.34 16 35 H 0.07 1.41 7.60 -51.93 -0.39 1.02 16 36 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.11 2.04 7.93 -51.93 -0.41 1.63 16 38 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.08 1.44 7.99 -51.93 -0.41 1.02 16 40 H 0.10 1.77 6.09 -51.93 -0.32 1.46 16 41 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 45 H 0.13 1.96 5.95 -52.49 -0.31 1.64 16 46 H 0.09 1.51 7.41 -51.93 -0.38 1.12 16 47 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 376.87 15.07 5.68 5.68 Total: -1.00 -27.87 376.87 -8.74 -36.61 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -7.40 Total: 9.14 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -3.19 Total: -15.27 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.52 Total: -32.76 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.11 Total: -19.11 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.23 Total: 15.71 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.87 -8.74 -36.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186865788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.392 kcal (2) G-P(sol) polarization free energy of solvation -27.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds