Wall clock time and date at job start Tue Mar 31 2020 12:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47117 * 2 1 4 4 C 1.52994 * 109.47117 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46776 * 179.97438 * 4 3 2 6 6 C 1.37094 * 120.00262 * 264.48309 * 5 4 3 7 7 H 1.08005 * 120.00242 * 145.75950 * 6 5 4 8 8 C 1.38955 * 120.00290 * 325.76138 * 6 5 4 9 9 N 1.31411 * 120.00089 * 157.91031 * 8 6 5 10 10 Si 1.86797 * 119.99631 * 337.91228 * 8 6 5 11 11 H 1.48495 * 109.47341 * 94.67049 * 10 8 6 12 12 H 1.48498 * 109.47092 * 214.67029 * 10 8 6 13 13 H 1.48502 * 109.47274 * 334.66899 * 10 8 6 14 14 C 1.34781 * 120.00187 * 84.48976 * 5 4 3 15 15 O 1.21294 * 119.99460 * 359.97438 * 14 5 4 16 16 C 1.50704 * 120.00263 * 179.97438 * 14 5 4 17 17 C 1.53771 * 113.61434 * 80.86066 * 16 14 5 18 18 C 1.53957 * 87.02072 * 89.22663 * 17 16 14 19 19 O 1.42908 * 113.73931 * 139.94074 * 18 17 16 20 20 C 1.35899 * 116.99752 * 102.48698 * 19 18 17 21 21 C 1.38729 * 120.05372 * 175.08515 * 20 19 18 22 22 C 1.38149 * 119.94443 * 179.74443 * 21 20 19 23 23 C 1.38272 * 120.05056 * 0.51190 * 22 21 20 24 24 C 1.38262 * 120.11472 * 359.76672 * 23 22 21 25 25 C 1.38142 * 120.05513 * 359.97438 * 24 23 22 26 26 C 1.53777 * 87.11049 * 25.36403 * 18 17 16 27 27 H 1.09001 * 109.47519 * 299.99517 * 1 2 3 28 28 H 1.09000 * 109.47374 * 60.00426 * 1 2 3 29 29 H 1.09007 * 109.46973 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47500 * 239.99866 * 2 1 3 31 31 H 1.09000 * 109.47374 * 119.99574 * 2 1 3 32 32 H 1.08992 * 109.47045 * 59.99587 * 3 2 1 33 33 H 1.09000 * 109.46651 * 300.00017 * 3 2 1 34 34 H 1.09002 * 109.46996 * 59.99930 * 4 3 2 35 35 H 1.09000 * 109.47374 * 299.99574 * 4 3 2 36 36 H 0.97000 * 119.99639 * 180.02562 * 9 8 6 37 37 H 1.08996 * 112.84406 * 309.66280 * 16 14 5 38 38 H 1.09004 * 113.61773 * 203.74880 * 17 16 14 39 39 H 1.09005 * 113.62103 * 334.65347 * 17 16 14 40 40 H 1.08991 * 113.53967 * 270.80643 * 18 17 16 41 41 H 1.07994 * 120.03135 * 359.97438 * 21 20 19 42 42 H 1.07994 * 119.97485 * 180.23107 * 22 21 20 43 43 H 1.08002 * 119.93681 * 179.74402 * 23 22 21 44 44 H 1.08003 * 119.97233 * 180.02562 * 24 23 22 45 45 H 1.07998 * 120.02748 * 179.97438 * 25 24 23 46 46 H 1.09001 * 113.61212 * 220.09433 * 26 18 17 47 47 H 1.08998 * 113.61547 * 89.18333 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0581 2.8238 -0.0013 6 6 4.3937 3.4317 -1.1833 7 1 4.2203 4.4896 -1.3148 8 6 4.9570 2.6869 -2.2123 9 7 4.8839 3.1179 -3.4516 10 14 5.8180 1.0730 -1.8339 11 1 4.8634 -0.0507 -2.0107 12 1 6.9670 0.8964 -2.7580 13 1 6.3083 1.0902 -0.4323 14 6 4.1776 3.4969 1.1603 15 8 3.8803 2.9591 2.2061 16 6 4.6804 4.9176 1.1597 17 6 3.6008 5.9529 0.8033 18 6 3.2768 6.0140 2.3071 19 8 3.0031 7.3333 2.7836 20 6 1.6993 7.6568 2.9891 21 6 1.3673 8.8830 3.5467 22 6 0.0409 9.2117 3.7498 23 6 -0.9548 8.3154 3.4076 24 6 -0.6263 7.0903 2.8572 25 6 0.6983 6.7591 2.6472 26 6 4.7233 5.5563 2.5580 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.9329 0.9288 -0.8909 35 1 3.9337 0.9287 0.8891 36 1 5.2768 2.5978 -4.1699 37 1 5.6051 5.0390 0.5956 38 1 4.0035 6.8844 0.4052 39 1 2.7903 5.5479 0.1973 40 1 2.5280 5.2869 2.6210 41 1 2.1448 9.5815 3.8182 42 1 -0.2182 10.1676 4.1803 43 1 -1.9909 8.5726 3.5711 44 1 -1.4059 6.3921 2.5904 45 1 0.9545 5.8019 2.2176 46 1 4.8179 4.8314 3.3665 47 1 5.4335 6.3791 2.6405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186865788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:20 Heat of formation + Delta-G solvation = -39.084781 kcal Electronic energy + Delta-G solvation = -27046.559694 eV Core-core repulsion = 23387.945131 eV Total energy + Delta-G solvation = -3658.614563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.85585 -40.70527 -39.04184 -37.54083 -36.62262 -35.62435 -33.86047 -31.93329 -30.81398 -30.30828 -27.41003 -26.78451 -26.57675 -24.90808 -23.60274 -23.05734 -22.17797 -21.69005 -20.26472 -19.49206 -18.50619 -17.95490 -17.43656 -16.98922 -16.73729 -16.50597 -16.26968 -15.95247 -15.83013 -15.39461 -15.09608 -14.77091 -14.67038 -14.41153 -14.28368 -14.02969 -13.72028 -13.49328 -13.41286 -13.18961 -13.07209 -12.96648 -12.86574 -12.42968 -12.35098 -12.21581 -12.11088 -11.95391 -11.77453 -11.76469 -11.48869 -11.48506 -11.25535 -11.04093 -10.44024 -9.94779 -9.80529 -9.13969 -8.53656 -6.10743 0.39625 0.50238 1.14949 1.29383 1.39350 1.79502 2.14476 2.24090 2.51429 2.84971 2.94316 3.47537 3.50147 3.72937 3.81712 3.88198 3.94334 3.99590 4.02758 4.16045 4.21700 4.28592 4.32803 4.44223 4.50852 4.54165 4.62766 4.70360 4.71743 4.77329 4.84285 4.86144 4.89360 4.94574 4.98640 5.02000 5.09138 5.18484 5.19721 5.30385 5.37017 5.41912 5.44728 5.50419 5.60296 5.90297 6.04744 6.24632 6.47122 6.92746 7.38861 7.74776 8.60141 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.003884 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.000140 B = 7206.534984 C = 8287.924908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.116 4.116 4 C 0.094 3.906 5 N -0.467 5.467 6 C -0.341 4.341 7 H 0.093 0.907 8 C 0.033 3.967 9 N -0.891 5.891 10 Si 0.921 3.079 11 H -0.258 1.258 12 H -0.285 1.285 13 H -0.270 1.270 14 C 0.486 3.514 15 O -0.614 6.614 16 C -0.115 4.115 17 C -0.124 4.124 18 C 0.066 3.934 19 O -0.310 6.310 20 C 0.107 3.893 21 C -0.167 4.167 22 C -0.080 4.080 23 C -0.162 4.162 24 C -0.089 4.089 25 C -0.227 4.227 26 C -0.099 4.099 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.280 0.720 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.141 0.859 42 H 0.160 0.840 43 H 0.151 0.849 44 H 0.138 0.862 45 H 0.113 0.887 46 H 0.078 0.922 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.537 5.656 9.861 14.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.154 4.154 4 C -0.028 4.028 5 N -0.186 5.186 6 C -0.468 4.468 7 H 0.111 0.889 8 C -0.172 4.172 9 N -0.527 5.527 10 Si 0.748 3.252 11 H -0.184 1.184 12 H -0.212 1.212 13 H -0.195 1.195 14 C 0.276 3.724 15 O -0.501 6.501 16 C -0.136 4.136 17 C -0.162 4.162 18 C 0.010 3.990 19 O -0.224 6.224 20 C 0.062 3.938 21 C -0.185 4.185 22 C -0.097 4.097 23 C -0.180 4.180 24 C -0.107 4.107 25 C -0.246 4.246 26 C -0.136 4.136 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.077 0.923 40 H 0.104 0.896 41 H 0.158 0.842 42 H 0.178 0.822 43 H 0.169 0.831 44 H 0.156 0.844 45 H 0.131 0.869 46 H 0.097 0.903 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.459 5.459 10.156 14.300 hybrid contribution 0.676 -1.140 -0.682 1.491 sum -7.783 4.319 9.474 12.999 Atomic orbital electron populations 1.21708 0.94107 1.02488 1.01811 1.21483 0.97406 0.94878 1.02128 1.21741 0.94093 0.98339 1.01239 1.21794 0.95871 0.84501 1.00638 1.43857 1.56604 1.12159 1.05989 1.19067 1.41754 0.96435 0.89539 0.88892 1.25766 0.96253 1.00762 0.94431 1.69819 1.42004 1.41304 0.99613 0.86264 0.79071 0.81318 0.78592 1.18437 1.21218 1.19502 1.20332 0.80367 0.89102 0.82587 1.90515 1.56177 1.71285 1.32111 1.21838 1.01316 0.91049 0.99361 1.23346 0.98044 0.99023 0.95776 1.24100 0.98285 0.82087 0.94501 1.86092 1.22975 1.32642 1.80725 1.19442 0.83186 0.95226 0.95972 1.20760 0.98398 0.95220 1.04167 1.21367 0.90912 1.00371 0.97092 1.21431 1.00965 0.93951 1.01631 1.21253 0.94988 0.97673 0.96810 1.21433 0.94611 1.00627 1.07955 1.23031 0.94672 0.99876 0.96070 0.92731 0.92874 0.90924 0.92039 0.91465 0.92894 0.92739 0.91924 0.91805 0.91036 0.87286 0.87386 0.92281 0.89559 0.84159 0.82204 0.83100 0.84412 0.86881 0.90294 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.91 71.98 0.71 -2.85 16 2 C -0.12 -3.65 5.93 30.59 0.18 -3.47 16 3 C -0.12 -4.40 5.50 30.59 0.17 -4.23 16 4 C 0.09 4.11 3.97 86.38 0.34 4.45 16 5 N -0.47 -21.98 2.25 -635.53 -1.43 -23.41 16 6 C -0.34 -17.27 9.04 84.04 0.76 -16.51 16 7 H 0.09 4.94 6.70 -2.91 -0.02 4.92 16 8 C 0.03 1.68 5.30 84.93 0.45 2.13 16 9 N -0.89 -48.17 13.96 21.66 0.30 -47.86 16 10 Si 0.92 41.07 24.89 68.60 1.71 42.78 16 11 H -0.26 -10.79 6.63 99.48 0.66 -10.13 16 12 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 13 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 14 C 0.49 21.93 6.84 87.66 0.60 22.53 16 15 O -0.61 -29.50 15.50 -3.07 -0.05 -29.54 16 16 C -0.11 -4.36 3.09 -11.01 -0.03 -4.39 16 17 C -0.12 -4.36 6.75 31.18 0.21 -4.15 16 18 C 0.07 2.23 3.27 31.18 0.10 2.33 16 19 O -0.31 -9.97 10.15 -92.42 -0.94 -10.91 16 20 C 0.11 3.18 6.68 22.51 0.15 3.33 16 21 C -0.17 -4.01 9.99 22.37 0.22 -3.79 16 22 C -0.08 -1.51 10.04 22.26 0.22 -1.28 16 23 C -0.16 -3.11 10.04 22.28 0.22 -2.89 16 24 C -0.09 -2.11 10.04 22.25 0.22 -1.89 16 25 C -0.23 -6.69 9.02 22.37 0.20 -6.49 16 26 C -0.10 -3.23 7.29 31.12 0.23 -3.00 16 27 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.06 2.77 3.07 -2.39 -0.01 2.76 16 35 H 0.06 2.76 7.60 -2.39 -0.02 2.75 16 36 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 37 H 0.11 4.13 7.93 -2.39 -0.02 4.11 16 38 H 0.11 3.47 8.14 -2.38 -0.02 3.45 16 39 H 0.06 2.29 7.99 -2.38 -0.02 2.27 16 40 H 0.09 3.17 6.09 -2.39 -0.01 3.15 16 41 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 42 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 43 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 44 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 45 H 0.11 3.62 5.95 -2.91 -0.02 3.60 16 46 H 0.08 2.73 7.41 -2.39 -0.02 2.71 16 47 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -60.52 376.87 5.46 -55.06 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: 0.90 Total: 34.06 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 4.97 Total: -20.16 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: -1.13 Total: -71.28 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -0.99 Total: -40.45 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.71 Total: 42.78 kcal Total: -60.52 5.46 -55.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186865788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.972 kcal (2) G-P(sol) polarization free energy of solvation -60.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds