Wall clock time and date at job start Tue Mar 31 2020 12:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99769 * 2 1 4 4 C 1.52998 * 109.47224 * 59.99928 * 3 2 1 5 5 C 1.52997 * 109.47297 * 299.99807 * 3 2 1 6 6 C 1.53000 * 109.46934 * 179.97438 * 3 2 1 7 7 H 1.09003 * 109.87517 * 186.64245 * 6 3 2 8 8 C 1.54327 * 110.00775 * 65.54551 * 6 3 2 9 9 C 1.55153 * 102.94283 * 218.31483 * 8 6 3 10 10 C 1.54700 * 101.67651 * 35.33703 * 9 8 6 11 11 N 1.47016 * 109.88635 * 307.66177 * 6 3 2 12 12 C 1.34784 * 125.64781 * 298.47455 * 11 6 3 13 13 O 1.21546 * 119.99872 * 0.81576 * 12 11 6 14 14 C 1.47886 * 119.99821 * 180.81234 * 12 11 6 15 15 C 1.39911 * 120.02751 * 337.71562 * 14 12 11 16 16 C 1.38333 * 120.35808 * 180.02562 * 15 14 12 17 17 C 1.37750 * 120.41222 * 359.97438 * 16 15 14 18 18 C 1.40753 * 120.03804 * 0.02562 * 17 16 15 19 19 C 1.41443 * 120.17687 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99867 * 192.92423 * 19 18 17 21 21 C 1.39934 * 119.99667 * 12.92136 * 19 18 17 22 22 N 1.30833 * 119.99762 * 218.41391 * 21 19 18 23 23 Si 1.86801 * 120.00425 * 38.41959 * 21 19 18 24 24 H 1.48503 * 109.46785 * 265.48830 * 23 21 19 25 25 H 1.48506 * 109.46774 * 25.48070 * 23 21 19 26 26 H 1.48489 * 109.47406 * 145.48309 * 23 21 19 27 27 C 1.39003 * 120.01826 * 157.97506 * 14 12 11 28 28 H 1.08995 * 109.47104 * 300.00274 * 1 2 3 29 29 H 1.09001 * 109.47115 * 60.00022 * 1 2 3 30 30 H 1.09001 * 109.47218 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47511 * 160.30467 * 4 3 2 32 32 H 1.08996 * 109.47465 * 280.31561 * 4 3 2 33 33 H 1.09006 * 109.47032 * 40.30942 * 4 3 2 34 34 H 1.09000 * 109.47282 * 300.00308 * 5 3 2 35 35 H 1.08997 * 109.47231 * 60.00407 * 5 3 2 36 36 H 1.08999 * 109.47311 * 180.02562 * 5 3 2 37 37 H 1.08999 * 110.72302 * 336.68014 * 8 6 3 38 38 H 1.09009 * 110.72008 * 99.95646 * 8 6 3 39 39 H 1.08999 * 111.01011 * 153.57379 * 9 8 6 40 40 H 1.08996 * 111.00832 * 277.43272 * 9 8 6 41 41 H 1.09005 * 110.39086 * 204.36489 * 10 9 8 42 42 H 1.08994 * 110.23411 * 82.11058 * 10 9 8 43 43 H 1.08002 * 119.82342 * 0.02597 * 15 14 12 44 44 H 1.07997 * 119.79578 * 180.02562 * 16 15 14 45 45 H 1.07997 * 119.98396 * 179.97438 * 17 16 15 46 46 H 0.96999 * 120.00084 * 5.05202 * 22 21 19 47 47 H 1.07995 * 120.20454 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0648 1.2492 5 6 1.5588 2.0647 -1.2492 6 6 3.5354 1.1847 0.0006 7 1 3.9852 2.1705 0.1192 8 6 4.0150 0.5443 -1.3191 9 6 5.1799 -0.3709 -0.8581 10 6 4.6698 -0.8573 0.5191 11 7 3.9668 0.3033 1.0954 12 6 3.7591 0.5229 2.4089 13 8 3.1560 1.5140 2.7715 14 6 4.2649 -0.4420 3.4089 15 6 4.5294 -1.7640 3.0349 16 6 5.0022 -2.6725 3.9648 17 6 5.2185 -2.2864 5.2693 18 6 4.9581 -0.9607 5.6641 19 6 5.1786 -0.5613 7.0029 20 1 4.7885 0.3817 7.3563 21 6 5.9023 -1.3880 7.8695 22 7 5.5386 -1.5016 9.1212 23 14 7.3876 -2.3295 7.2395 24 1 6.9721 -3.6968 6.8356 25 1 7.9624 -1.6206 6.0679 26 1 8.4088 -2.4194 8.3136 27 6 4.4727 -0.0376 4.7225 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 2.2438 2.8909 1.4398 32 1 0.5531 2.4552 1.0935 33 1 1.5577 1.3890 2.1046 34 1 1.8804 1.5238 -2.1392 35 1 0.4722 2.1509 -1.2493 36 1 2.0025 3.0604 -1.2495 37 1 3.2184 -0.0447 -1.7737 38 1 4.3742 1.3073 -2.0098 39 1 5.3149 -1.2071 -1.5441 40 1 6.1039 0.1970 -0.7503 41 1 5.5073 -1.1470 1.1536 42 1 3.9817 -1.6931 0.3925 43 1 4.3636 -2.0770 2.0146 44 1 5.2037 -3.6906 3.6661 45 1 5.5873 -3.0015 5.9897 46 1 4.7262 -1.0717 9.4311 47 1 4.2663 0.9809 5.0165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188675856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:41 Heat of formation + Delta-G solvation = -37.152783 kcal Electronic energy + Delta-G solvation = -27946.975998 eV Core-core repulsion = 24288.445212 eV Total energy + Delta-G solvation = -3658.530786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.57148 -38.45088 -37.18699 -36.77960 -33.96866 -32.94291 -31.51478 -30.23327 -29.78834 -28.32014 -27.24885 -26.66182 -24.84696 -24.17119 -21.98262 -21.44053 -20.50111 -20.07513 -19.10143 -18.18217 -16.57888 -16.49569 -15.71315 -15.60400 -15.37427 -15.08232 -14.60296 -14.11005 -14.00644 -13.88690 -13.56355 -13.31239 -13.18457 -12.75907 -12.58476 -12.39868 -12.36819 -12.17055 -12.08075 -11.95520 -11.75208 -11.53661 -11.25099 -11.14837 -10.98625 -10.79510 -10.72413 -10.50228 -10.38782 -10.23484 -9.76048 -9.51301 -9.45926 -8.98060 -8.87915 -8.14922 -7.79950 -7.71957 -7.52687 -4.53698 2.11554 2.69436 3.14531 3.30575 3.33905 3.45938 3.67652 3.85736 3.95085 4.38195 4.53763 4.58632 4.76663 4.97094 5.03688 5.15662 5.31115 5.35537 5.39653 5.40752 5.44254 5.47904 5.64459 5.68371 5.71673 5.77863 5.83779 5.91148 5.96060 5.98424 6.05213 6.09975 6.22958 6.26847 6.28512 6.51056 6.65695 6.79632 6.89498 6.96491 7.21036 7.32186 7.39879 7.57682 7.67212 7.74052 7.86226 8.04870 8.34180 8.51649 8.70282 8.82046 9.75967 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021974 B = 0.003706 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.920050 B = 7553.062809 C = 8089.658937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.369 6.369 3 C 0.102 3.898 4 C -0.169 4.169 5 C -0.176 4.176 6 C 0.154 3.846 7 H 0.082 0.918 8 C -0.126 4.126 9 C -0.137 4.137 10 C 0.102 3.898 11 N -0.601 5.601 12 C 0.573 3.427 13 O -0.537 6.537 14 C -0.092 4.092 15 C -0.251 4.251 16 C -0.075 4.075 17 C -0.246 4.246 18 C 0.090 3.910 19 C -0.518 4.518 20 H 0.081 0.919 21 C 0.056 3.944 22 N -0.782 5.782 23 Si 1.065 2.935 24 H -0.273 1.273 25 H -0.263 1.263 26 H -0.286 1.286 27 C -0.162 4.162 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.030 0.970 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.113 0.887 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.293 0.707 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.182 1.688 -19.418 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.288 6.288 3 C 0.062 3.938 4 C -0.226 4.226 5 C -0.234 4.234 6 C 0.050 3.950 7 H 0.100 0.900 8 C -0.163 4.163 9 C -0.175 4.175 10 C -0.021 4.021 11 N -0.335 5.335 12 C 0.366 3.634 13 O -0.417 6.417 14 C -0.094 4.094 15 C -0.270 4.270 16 C -0.094 4.094 17 C -0.265 4.265 18 C 0.087 3.913 19 C -0.544 4.544 20 H 0.099 0.901 21 C -0.169 4.169 22 N -0.401 5.401 23 Si 0.890 3.110 24 H -0.199 1.199 25 H -0.188 1.188 26 H -0.213 1.213 27 C -0.182 4.182 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.131 0.869 44 H 0.114 0.886 45 H 0.120 0.880 46 H 0.104 0.896 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.236 1.123 -18.532 18.701 hybrid contribution -1.746 1.293 -0.342 2.199 sum -3.982 2.416 -18.874 19.440 Atomic orbital electron populations 1.22696 0.82099 1.02146 0.99817 1.87969 1.18852 1.27039 1.94970 1.21923 0.93287 0.83664 0.94924 1.22951 0.99051 1.02348 0.98223 1.22445 1.01766 1.00946 0.98231 1.21587 0.91291 0.94887 0.87205 0.90042 1.22689 0.98562 0.99342 0.95745 1.22827 0.98096 0.99796 0.96824 1.22636 0.96863 0.88996 0.93607 1.48141 1.57261 1.23526 1.04535 1.18485 0.78317 0.85990 0.80562 1.90706 1.40639 1.30285 1.80070 1.19306 1.03327 0.93504 0.93307 1.20983 1.13162 0.93460 0.99403 1.20499 0.98124 0.97228 0.93499 1.21136 1.12683 0.96455 0.96218 1.17566 0.90342 0.90992 0.92420 1.20622 1.32119 1.06509 0.95181 0.90135 1.27363 1.01891 0.94520 0.93157 1.70563 1.22038 1.29671 1.17804 0.83798 0.74232 0.76760 0.76186 1.19925 1.18762 1.21336 1.21004 1.07240 0.98830 0.91136 0.93977 0.94368 0.90142 0.91171 0.95115 0.88391 0.91691 0.92184 0.91552 0.89820 0.90577 0.90044 0.90830 0.88947 0.91110 0.86898 0.88645 0.87964 0.89561 0.87757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.27 101.05 1.04 1.38 16 2 O -0.37 -5.33 9.52 -35.23 -0.34 -5.66 16 3 C 0.10 1.37 0.50 -90.62 -0.05 1.33 16 4 C -0.17 -2.67 5.88 37.16 0.22 -2.45 16 5 C -0.18 -1.78 7.84 37.16 0.29 -1.49 16 6 C 0.15 2.09 2.45 -66.95 -0.16 1.93 16 7 H 0.08 1.12 8.01 -51.93 -0.42 0.70 16 8 C -0.13 -1.27 5.25 -24.90 -0.13 -1.40 16 9 C -0.14 -1.39 7.07 -24.70 -0.17 -1.57 16 10 C 0.10 1.39 4.96 -2.64 -0.01 1.38 16 11 N -0.60 -9.89 2.79 -164.24 -0.46 -10.35 16 12 C 0.57 11.81 7.16 -12.31 -0.09 11.72 16 13 O -0.54 -11.92 11.42 5.32 0.06 -11.86 16 14 C -0.09 -2.07 5.75 -105.04 -0.60 -2.67 16 15 C -0.25 -5.19 8.02 -38.92 -0.31 -5.50 16 16 C -0.08 -1.61 10.01 -39.72 -0.40 -2.01 16 17 C -0.25 -5.95 7.79 -38.81 -0.30 -6.25 16 18 C 0.09 2.34 5.38 -106.87 -0.57 1.76 16 19 C -0.52 -13.96 9.29 -37.73 -0.35 -14.31 16 20 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 21 C 0.06 1.43 5.17 -17.34 -0.09 1.34 16 22 N -0.78 -20.32 13.65 55.55 0.76 -19.56 16 23 Si 1.07 23.35 25.58 -169.99 -4.35 19.00 16 24 H -0.27 -5.68 6.39 56.52 0.36 -5.32 16 25 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 27 C -0.16 -4.07 9.33 -38.44 -0.36 -4.43 16 28 H 0.04 0.52 6.89 -51.93 -0.36 0.16 16 29 H 0.04 0.37 6.42 -51.93 -0.33 0.04 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.17 7.04 -51.93 -0.37 0.81 16 32 H 0.03 0.43 7.50 -51.93 -0.39 0.04 16 33 H 0.10 1.92 5.39 -53.02 -0.29 1.64 16 34 H 0.06 0.58 6.72 -51.93 -0.35 0.23 16 35 H 0.06 0.58 6.53 -51.93 -0.34 0.24 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.86 6.87 -51.93 -0.36 0.50 16 38 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 1.35 6.15 -51.93 -0.32 1.03 16 42 H 0.07 0.97 7.22 -51.93 -0.38 0.59 16 43 H 0.11 2.00 4.16 -52.49 -0.22 1.78 16 44 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 45 H 0.10 2.44 4.06 -52.49 -0.21 2.22 16 46 H 0.29 7.43 8.73 -40.82 -0.36 7.08 16 47 H 0.10 2.67 7.80 -52.49 -0.41 2.26 16 LS Contribution 351.97 15.07 5.30 5.30 Total: -1.00 -28.87 351.97 -7.96 -36.83 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.88 Total: 7.55 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -2.06 Total: -21.25 kcal Atomic # 7 Polarization: -30.21 SS G_CDS: 0.30 Total: -29.91 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.27 Total: -17.52 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -4.35 Total: 19.00 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.87 -7.96 -36.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188675856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.326 kcal (2) G-P(sol) polarization free energy of solvation -28.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds