Wall clock time and date at job start Tue Mar 31 2020 12:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99769 * 2 1 4 4 C 1.52998 * 109.47224 * 59.99928 * 3 2 1 5 5 C 1.52997 * 109.47297 * 299.99807 * 3 2 1 6 6 C 1.53000 * 109.46934 * 179.97438 * 3 2 1 7 7 H 1.09003 * 109.87517 * 186.64245 * 6 3 2 8 8 C 1.54327 * 110.00775 * 65.54551 * 6 3 2 9 9 C 1.55153 * 102.94283 * 218.31483 * 8 6 3 10 10 C 1.54700 * 101.67651 * 35.33703 * 9 8 6 11 11 N 1.47016 * 109.88635 * 307.66177 * 6 3 2 12 12 C 1.34784 * 125.64781 * 298.47455 * 11 6 3 13 13 O 1.21546 * 119.99872 * 0.81576 * 12 11 6 14 14 C 1.47886 * 119.99821 * 180.81234 * 12 11 6 15 15 C 1.39911 * 120.02751 * 337.71562 * 14 12 11 16 16 C 1.38333 * 120.35808 * 180.02562 * 15 14 12 17 17 C 1.37750 * 120.41222 * 359.97438 * 16 15 14 18 18 C 1.40753 * 120.03804 * 0.02562 * 17 16 15 19 19 C 1.41443 * 120.17687 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99867 * 192.92423 * 19 18 17 21 21 C 1.39934 * 119.99667 * 12.92136 * 19 18 17 22 22 N 1.30833 * 119.99762 * 218.41391 * 21 19 18 23 23 Si 1.86801 * 120.00425 * 38.41959 * 21 19 18 24 24 H 1.48503 * 109.46785 * 265.48830 * 23 21 19 25 25 H 1.48506 * 109.46774 * 25.48070 * 23 21 19 26 26 H 1.48489 * 109.47406 * 145.48309 * 23 21 19 27 27 C 1.39003 * 120.01826 * 157.97506 * 14 12 11 28 28 H 1.08995 * 109.47104 * 300.00274 * 1 2 3 29 29 H 1.09001 * 109.47115 * 60.00022 * 1 2 3 30 30 H 1.09001 * 109.47218 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47511 * 160.30467 * 4 3 2 32 32 H 1.08996 * 109.47465 * 280.31561 * 4 3 2 33 33 H 1.09006 * 109.47032 * 40.30942 * 4 3 2 34 34 H 1.09000 * 109.47282 * 300.00308 * 5 3 2 35 35 H 1.08997 * 109.47231 * 60.00407 * 5 3 2 36 36 H 1.08999 * 109.47311 * 180.02562 * 5 3 2 37 37 H 1.08999 * 110.72302 * 336.68014 * 8 6 3 38 38 H 1.09009 * 110.72008 * 99.95646 * 8 6 3 39 39 H 1.08999 * 111.01011 * 153.57379 * 9 8 6 40 40 H 1.08996 * 111.00832 * 277.43272 * 9 8 6 41 41 H 1.09005 * 110.39086 * 204.36489 * 10 9 8 42 42 H 1.08994 * 110.23411 * 82.11058 * 10 9 8 43 43 H 1.08002 * 119.82342 * 0.02597 * 15 14 12 44 44 H 1.07997 * 119.79578 * 180.02562 * 16 15 14 45 45 H 1.07997 * 119.98396 * 179.97438 * 17 16 15 46 46 H 0.96999 * 120.00084 * 5.05202 * 22 21 19 47 47 H 1.07995 * 120.20454 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0648 1.2492 5 6 1.5588 2.0647 -1.2492 6 6 3.5354 1.1847 0.0006 7 1 3.9852 2.1705 0.1192 8 6 4.0150 0.5443 -1.3191 9 6 5.1799 -0.3709 -0.8581 10 6 4.6698 -0.8573 0.5191 11 7 3.9668 0.3033 1.0954 12 6 3.7591 0.5229 2.4089 13 8 3.1560 1.5140 2.7715 14 6 4.2649 -0.4420 3.4089 15 6 4.5294 -1.7640 3.0349 16 6 5.0022 -2.6725 3.9648 17 6 5.2185 -2.2864 5.2693 18 6 4.9581 -0.9607 5.6641 19 6 5.1786 -0.5613 7.0029 20 1 4.7885 0.3817 7.3563 21 6 5.9023 -1.3880 7.8695 22 7 5.5386 -1.5016 9.1212 23 14 7.3876 -2.3295 7.2395 24 1 6.9721 -3.6968 6.8356 25 1 7.9624 -1.6206 6.0679 26 1 8.4088 -2.4194 8.3136 27 6 4.4727 -0.0376 4.7225 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 2.2438 2.8909 1.4398 32 1 0.5531 2.4552 1.0935 33 1 1.5577 1.3890 2.1046 34 1 1.8804 1.5238 -2.1392 35 1 0.4722 2.1509 -1.2493 36 1 2.0025 3.0604 -1.2495 37 1 3.2184 -0.0447 -1.7737 38 1 4.3742 1.3073 -2.0098 39 1 5.3149 -1.2071 -1.5441 40 1 6.1039 0.1970 -0.7503 41 1 5.5073 -1.1470 1.1536 42 1 3.9817 -1.6931 0.3925 43 1 4.3636 -2.0770 2.0146 44 1 5.2037 -3.6906 3.6661 45 1 5.5873 -3.0015 5.9897 46 1 4.7262 -1.0717 9.4311 47 1 4.2663 0.9809 5.0165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188675856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:40 Heat of formation + Delta-G solvation = -54.414713 kcal Electronic energy + Delta-G solvation = -27947.724531 eV Core-core repulsion = 24288.445212 eV Total energy + Delta-G solvation = -3659.279319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83988 -39.88726 -38.76090 -38.08241 -35.84427 -34.11527 -32.79435 -31.94965 -31.50662 -29.43015 -28.27913 -27.65863 -26.70653 -25.57847 -23.45724 -22.61711 -22.08652 -21.47475 -20.46524 -19.82498 -18.06112 -17.64561 -17.37137 -16.95338 -16.67796 -16.18483 -16.00843 -15.67336 -15.59557 -15.41301 -14.73733 -14.56655 -14.33588 -14.20314 -14.08713 -13.77525 -13.60023 -13.42103 -13.29296 -13.21510 -13.07662 -12.88662 -12.75474 -12.51119 -12.35173 -12.16480 -11.92281 -11.88146 -11.56530 -11.48661 -11.33304 -11.21972 -10.88440 -10.50644 -10.47008 -9.71069 -9.63710 -9.54268 -9.37667 -6.57520 0.30763 0.83755 1.36424 1.55148 1.75888 1.99128 2.04285 2.16631 2.50939 2.83878 3.46683 3.53541 3.61349 3.82322 3.95202 4.04123 4.14461 4.25399 4.32104 4.39394 4.44819 4.48885 4.53243 4.61258 4.67864 4.69091 4.70840 4.82138 4.85647 4.89506 4.93143 4.99736 5.00093 5.06440 5.12882 5.15002 5.19847 5.29423 5.36864 5.41647 5.49326 5.57938 5.70706 5.75291 5.86944 6.01845 6.31282 6.35991 6.53297 6.59069 6.76451 7.27001 7.74740 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021974 B = 0.003706 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.920050 B = 7553.062809 C = 8089.658937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.387 6.387 3 C 0.103 3.897 4 C -0.160 4.160 5 C -0.168 4.168 6 C 0.141 3.859 7 H 0.075 0.925 8 C -0.113 4.113 9 C -0.125 4.125 10 C 0.087 3.913 11 N -0.596 5.596 12 C 0.562 3.438 13 O -0.566 6.566 14 C -0.097 4.097 15 C -0.224 4.224 16 C -0.073 4.073 17 C -0.252 4.252 18 C 0.074 3.926 19 C -0.563 4.563 20 H 0.043 0.957 21 C 0.029 3.971 22 N -0.801 5.801 23 Si 1.098 2.902 24 H -0.246 1.246 25 H -0.264 1.264 26 H -0.271 1.271 27 C -0.198 4.198 28 H 0.025 0.975 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.153 0.847 44 H 0.143 0.857 45 H 0.109 0.891 46 H 0.284 0.716 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.450 -0.694 -24.522 24.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.306 6.306 3 C 0.063 3.937 4 C -0.217 4.217 5 C -0.226 4.226 6 C 0.038 3.962 7 H 0.093 0.907 8 C -0.151 4.151 9 C -0.163 4.163 10 C -0.034 4.034 11 N -0.327 5.327 12 C 0.354 3.646 13 O -0.448 6.448 14 C -0.100 4.100 15 C -0.243 4.243 16 C -0.091 4.091 17 C -0.271 4.271 18 C 0.072 3.928 19 C -0.589 4.589 20 H 0.061 0.939 21 C -0.191 4.191 22 N -0.420 5.420 23 Si 0.916 3.084 24 H -0.171 1.171 25 H -0.189 1.189 26 H -0.197 1.197 27 C -0.219 4.219 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.171 0.829 44 H 0.161 0.839 45 H 0.126 0.874 46 H 0.095 0.905 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.518 -1.266 -23.670 23.752 hybrid contribution -2.109 2.084 1.047 3.145 sum -3.627 0.819 -22.622 22.926 Atomic orbital electron populations 1.22831 0.80941 1.03130 1.00198 1.87920 1.20196 1.27397 1.95076 1.21920 0.93213 0.83562 0.95003 1.22766 0.99457 1.01154 0.98368 1.22381 1.02250 1.01076 0.96897 1.21940 0.91613 0.94615 0.88005 0.90683 1.22710 0.98658 0.99923 0.93805 1.22817 0.97949 1.00787 0.94700 1.22882 0.96504 0.88419 0.95625 1.48158 1.56158 1.24751 1.03631 1.18262 0.78755 0.85541 0.82083 1.90717 1.41903 1.31200 1.80996 1.19655 1.02261 0.95215 0.92838 1.21543 1.09565 0.92024 1.01159 1.21016 0.96465 0.99493 0.92114 1.21358 1.12511 0.95366 0.97883 1.17730 0.90727 0.92340 0.92047 1.20552 1.35368 1.06286 0.96738 0.93874 1.28512 1.03240 0.94685 0.92689 1.70629 1.22197 1.30848 1.18369 0.83420 0.71810 0.76906 0.76222 1.17116 1.18865 1.19711 1.20922 1.10093 0.97905 0.92942 0.95638 0.91899 0.88961 0.92980 0.93887 0.92594 0.89540 0.91560 0.90723 0.89064 0.87669 0.86920 0.90378 0.89831 0.90291 0.82946 0.83923 0.87351 0.90534 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.27 113.37 1.16 1.70 16 2 O -0.39 -10.23 9.52 -148.98 -1.42 -11.65 16 3 C 0.10 2.58 0.50 -10.79 -0.01 2.57 16 4 C -0.16 -5.18 5.88 71.98 0.42 -4.76 16 5 C -0.17 -2.82 7.84 71.98 0.56 -2.26 16 6 C 0.14 3.51 2.45 45.34 0.11 3.62 16 7 H 0.08 1.96 8.01 -2.39 -0.02 1.94 16 8 C -0.11 -1.74 5.25 31.78 0.17 -1.57 16 9 C -0.12 -1.89 7.07 31.91 0.23 -1.66 16 10 C 0.09 2.06 4.96 86.78 0.43 2.49 16 11 N -0.60 -18.69 2.79 -791.80 -2.21 -20.90 16 12 C 0.56 23.64 7.16 86.80 0.62 24.26 16 13 O -0.57 -26.71 11.42 -3.86 -0.04 -26.75 16 14 C -0.10 -4.43 5.75 -20.13 -0.12 -4.55 16 15 C -0.22 -8.71 8.02 22.70 0.18 -8.53 16 16 C -0.07 -2.90 10.01 22.18 0.22 -2.68 16 17 C -0.25 -12.00 7.79 22.77 0.18 -11.83 16 18 C 0.07 4.04 5.38 -21.32 -0.11 3.93 16 19 C -0.56 -32.72 9.29 23.47 0.22 -32.50 16 20 H 0.04 2.71 8.06 -2.91 -0.02 2.68 16 21 C 0.03 1.54 5.17 85.25 0.44 1.98 16 22 N -0.80 -43.66 13.65 21.82 0.30 -43.36 16 23 Si 1.10 46.85 25.58 68.60 1.75 48.60 16 24 H -0.25 -9.42 6.39 99.48 0.64 -8.79 16 25 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 27 C -0.20 -10.64 9.33 23.01 0.21 -10.43 16 28 H 0.02 0.62 6.89 -2.39 -0.02 0.60 16 29 H 0.06 1.03 6.42 -2.39 -0.02 1.01 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.82 7.04 -2.39 -0.02 1.80 16 32 H 0.04 1.21 7.50 -2.39 -0.02 1.20 16 33 H 0.06 2.31 5.39 -19.75 -0.11 2.21 16 34 H 0.09 1.11 6.72 -2.39 -0.02 1.10 16 35 H 0.07 1.04 6.53 -2.39 -0.02 1.03 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.34 6.87 -2.39 -0.02 1.32 16 38 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.08 2.13 6.15 -2.38 -0.01 2.12 16 42 H 0.08 1.78 7.22 -2.39 -0.02 1.76 16 43 H 0.15 4.73 4.16 -2.91 -0.01 4.72 16 44 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 45 H 0.11 4.99 4.06 -2.91 -0.01 4.98 16 46 H 0.28 15.49 8.73 -92.71 -0.81 14.68 16 47 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 Total: -1.00 -69.81 351.97 4.08 -65.72 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 0.78 Total: 28.56 kcal Atomic # 6 Polarization: -45.14 SS G_CDS: 4.93 Total: -40.22 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -1.91 Total: -64.27 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -1.46 Total: -38.40 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.75 Total: 48.60 kcal Total: -69.81 4.08 -65.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188675856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.309 kcal (2) G-P(sol) polarization free energy of solvation -69.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds