Wall clock time and date at job start Tue Mar 31 2020 12:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00176 * 2 1 4 4 C 1.53001 * 109.46944 * 59.99913 * 3 2 1 5 5 C 1.53000 * 109.46924 * 299.99952 * 3 2 1 6 6 C 1.52995 * 109.47151 * 179.97438 * 3 2 1 7 7 H 1.08999 * 109.87865 * 57.65080 * 6 3 2 8 8 C 1.54327 * 110.01106 * 178.74758 * 6 3 2 9 9 C 1.55158 * 102.94217 * 141.68052 * 8 6 3 10 10 C 1.55124 * 101.48884 * 324.33291 * 9 8 6 11 11 N 1.47026 * 109.88641 * 296.63033 * 6 3 2 12 12 C 1.34784 * 125.64420 * 61.44729 * 11 6 3 13 13 O 1.21549 * 119.99569 * 6.52756 * 12 11 6 14 14 C 1.47882 * 119.99755 * 186.52214 * 12 11 6 15 15 C 1.39923 * 120.02700 * 9.20027 * 14 12 11 16 16 C 1.38325 * 120.35855 * 180.02562 * 15 14 12 17 17 C 1.37761 * 120.41267 * 359.97168 * 16 15 14 18 18 C 1.40744 * 120.03794 * 0.02562 * 17 16 15 19 19 C 1.41443 * 120.17825 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99487 * 332.21286 * 19 18 17 21 21 C 1.39936 * 119.99847 * 152.20948 * 19 18 17 22 22 N 1.30822 * 120.00301 * 333.73488 * 21 19 18 23 23 Si 1.86800 * 119.99749 * 153.73925 * 21 19 18 24 24 H 1.48502 * 109.47299 * 89.99546 * 23 21 19 25 25 H 1.48497 * 109.47251 * 209.99792 * 23 21 19 26 26 H 1.48505 * 109.46923 * 329.99689 * 23 21 19 27 27 C 1.38992 * 120.02217 * 189.49285 * 14 12 11 28 28 H 1.09001 * 109.47450 * 300.00386 * 1 2 3 29 29 H 1.09001 * 109.47058 * 59.99783 * 1 2 3 30 30 H 1.09002 * 109.47151 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46694 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.47353 * 299.99756 * 4 3 2 33 33 H 1.08992 * 109.47315 * 60.00581 * 4 3 2 34 34 H 1.08998 * 109.47203 * 305.67957 * 5 3 2 35 35 H 1.08997 * 109.47341 * 65.68668 * 5 3 2 36 36 H 1.09009 * 109.46839 * 185.68374 * 5 3 2 37 37 H 1.08999 * 110.72267 * 260.04697 * 8 6 3 38 38 H 1.09003 * 110.71852 * 23.32095 * 8 6 3 39 39 H 1.09001 * 111.00240 * 82.57341 * 9 8 6 40 40 H 1.09005 * 111.00218 * 206.38218 * 9 8 6 41 41 H 1.09002 * 110.49684 * 278.45313 * 10 9 8 42 42 H 1.09001 * 110.34266 * 156.05449 * 10 9 8 43 43 H 1.08001 * 119.81838 * 0.03678 * 15 14 12 44 44 H 1.08000 * 119.79642 * 179.97438 * 16 15 14 45 45 H 1.07999 * 119.98005 * 180.02562 * 17 16 15 46 46 H 0.97001 * 119.99749 * 357.06401 * 22 21 19 47 47 H 1.08001 * 120.20896 * 0.02562 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5587 2.0647 1.2493 5 6 1.5588 2.0647 -1.2493 6 6 3.5354 1.1846 0.0006 7 1 3.8619 0.6084 -0.8651 8 6 4.1764 2.5881 -0.0310 9 6 5.4012 2.4321 0.9086 10 6 4.8437 1.4635 1.9845 11 7 3.9845 0.5275 1.2369 12 6 3.6595 -0.7216 1.6252 13 8 3.0348 -1.4475 0.8766 14 6 4.0631 -1.2089 2.9618 15 6 4.6094 -0.3211 3.8952 16 6 4.9897 -0.7696 5.1472 17 6 4.8347 -2.0948 5.4900 18 6 4.2870 -3.0026 4.5644 19 6 4.1260 -4.3637 4.9135 20 1 4.7818 -4.8152 5.6431 21 6 3.1169 -5.1253 4.3134 22 7 2.0392 -4.5403 3.8577 23 14 3.3088 -6.9773 4.1631 24 1 2.7433 -7.6331 5.3695 25 1 2.5865 -7.4536 2.9563 26 1 4.7495 -7.3176 4.0442 27 6 3.9056 -2.5503 3.2897 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.0018 3.0606 1.2490 32 1 0.4721 2.1508 1.2492 33 1 1.8804 1.5239 2.1392 34 1 1.7908 1.4753 -2.1363 35 1 0.4840 2.2391 -1.1998 36 1 2.0800 3.0206 -1.3016 37 1 4.4955 2.8436 -1.0414 38 1 3.4854 3.3365 0.3571 39 1 6.2454 1.9898 0.3798 40 1 5.6781 3.3888 1.3516 41 1 4.2569 2.0101 2.7228 42 1 5.6587 0.9257 2.4690 43 1 4.7346 0.7201 3.6367 44 1 5.4108 -0.0765 5.8605 45 1 5.1336 -2.4373 6.4697 46 1 1.9202 -3.5846 3.9738 47 1 3.4892 -3.2403 2.5707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188675858.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:46 Heat of formation + Delta-G solvation = -41.969250 kcal Electronic energy + Delta-G solvation = -28275.983703 eV Core-core repulsion = 24617.244060 eV Total energy + Delta-G solvation = -3658.739643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.44049 -38.37790 -37.15662 -36.53577 -33.94740 -32.77788 -31.30037 -29.93095 -29.29953 -28.15477 -27.35110 -26.58134 -25.02618 -24.16050 -21.81433 -21.64946 -20.84304 -19.62457 -18.60007 -17.88812 -16.73029 -16.10416 -16.00759 -15.20318 -15.06370 -14.84884 -14.31777 -14.05158 -13.97074 -13.69712 -13.35520 -13.18327 -13.12244 -12.84107 -12.81411 -12.32414 -12.21802 -12.09203 -11.93553 -11.88938 -11.69390 -11.29275 -11.27287 -11.13776 -11.00153 -10.88731 -10.81876 -10.35843 -10.29285 -10.05844 -10.02974 -9.48979 -9.24290 -8.94382 -8.80882 -8.13215 -7.71126 -7.60576 -7.15929 -4.42154 2.22372 2.79461 3.19285 3.28629 3.41319 3.45327 3.89521 3.97040 4.07151 4.49334 4.63304 4.71498 4.83795 4.95876 5.00582 5.05049 5.31506 5.39590 5.46675 5.48199 5.50005 5.55216 5.58591 5.62504 5.68010 5.74839 5.81582 5.87369 5.93560 6.02614 6.05391 6.08745 6.12211 6.14157 6.30122 6.36633 6.60485 6.80149 6.91724 7.02633 7.28753 7.57365 7.60146 7.74967 7.77187 7.79677 8.07627 8.20858 8.28521 8.70823 8.89202 9.08165 10.10836 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.004492 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.259786 B = 6231.735085 C = 7402.387823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.335 6.335 3 C 0.097 3.903 4 C -0.175 4.175 5 C -0.175 4.175 6 C 0.155 3.845 7 H 0.076 0.924 8 C -0.128 4.128 9 C -0.137 4.137 10 C 0.095 3.905 11 N -0.615 5.615 12 C 0.572 3.428 13 O -0.504 6.504 14 C -0.100 4.100 15 C -0.256 4.256 16 C -0.091 4.091 17 C -0.214 4.214 18 C 0.087 3.913 19 C -0.526 4.526 20 H 0.077 0.923 21 C 0.036 3.964 22 N -0.787 5.787 23 Si 1.068 2.932 24 H -0.277 1.277 25 H -0.273 1.273 26 H -0.275 1.275 27 C -0.150 4.150 28 H 0.036 0.964 29 H 0.033 0.967 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.122 0.878 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.299 0.701 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.225 15.095 -6.958 16.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.253 6.253 3 C 0.056 3.944 4 C -0.233 4.233 5 C -0.233 4.233 6 C 0.051 3.949 7 H 0.094 0.906 8 C -0.165 4.165 9 C -0.175 4.175 10 C -0.027 4.027 11 N -0.351 5.351 12 C 0.363 3.637 13 O -0.378 6.378 14 C -0.103 4.103 15 C -0.275 4.275 16 C -0.110 4.110 17 C -0.234 4.234 18 C 0.084 3.916 19 C -0.553 4.553 20 H 0.095 0.905 21 C -0.186 4.186 22 N -0.409 5.409 23 Si 0.891 3.109 24 H -0.203 1.203 25 H -0.198 1.198 26 H -0.200 1.200 27 C -0.170 4.170 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.113 0.887 43 H 0.139 0.861 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.113 0.887 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.164 13.056 -7.938 15.281 hybrid contribution 0.428 1.790 0.751 1.988 sum 0.592 14.846 -7.188 16.505 Atomic orbital electron populations 1.22730 0.83076 1.02479 0.98829 1.88483 1.17850 1.24343 1.94581 1.21852 0.93699 0.84951 0.93920 1.22411 1.01138 1.00450 0.99252 1.22416 1.01678 1.00742 0.98487 1.21360 0.91055 0.93198 0.89267 0.90594 1.22776 0.97524 0.95474 1.00764 1.22930 0.97610 0.99867 0.97136 1.22813 0.94653 0.91107 0.94171 1.48311 1.51108 1.13915 1.21783 1.18497 0.78834 0.79249 0.87133 1.90774 1.38639 1.53878 1.54508 1.19425 1.03389 0.95094 0.92388 1.21416 1.11110 0.99336 0.95678 1.20529 0.99599 0.95350 0.95479 1.21097 1.10795 0.92983 0.98546 1.17638 0.90505 0.93194 0.90225 1.20532 1.16488 0.94862 1.23441 0.90463 1.27029 0.91651 1.08510 0.91459 1.70449 1.23048 1.16181 1.31244 0.83613 0.77054 0.72263 0.77943 1.20316 1.19750 1.20010 1.21366 1.05446 0.93586 0.96588 0.94574 0.94824 0.89898 0.91782 0.92584 0.91326 0.91729 0.92251 0.91523 0.90169 0.90093 0.90566 0.90047 0.91505 0.88672 0.86066 0.88975 0.88776 0.88730 0.86547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.21 101.05 1.03 1.42 16 2 O -0.33 -6.19 7.05 -59.05 -0.42 -6.61 16 3 C 0.10 1.38 0.62 -90.62 -0.06 1.32 16 4 C -0.18 -2.32 7.83 37.16 0.29 -2.03 16 5 C -0.18 -1.90 7.92 37.16 0.29 -1.61 16 6 C 0.16 2.24 2.51 -66.95 -0.17 2.07 16 7 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 8 C -0.13 -1.24 5.08 -24.89 -0.13 -1.37 16 9 C -0.14 -1.33 7.10 -24.47 -0.17 -1.51 16 10 C 0.10 1.28 4.90 -2.41 -0.01 1.27 16 11 N -0.61 -10.59 2.18 -163.99 -0.36 -10.94 16 12 C 0.57 12.89 7.36 -12.31 -0.09 12.80 16 13 O -0.50 -13.02 13.92 -18.49 -0.26 -13.28 16 14 C -0.10 -2.39 5.85 -105.04 -0.61 -3.01 16 15 C -0.26 -5.40 8.31 -38.92 -0.32 -5.72 16 16 C -0.09 -1.96 10.01 -39.72 -0.40 -2.36 16 17 C -0.21 -5.21 9.78 -38.81 -0.38 -5.59 16 18 C 0.09 2.35 5.23 -106.87 -0.56 1.79 16 19 C -0.53 -14.27 8.97 -37.73 -0.34 -14.61 16 20 H 0.08 2.02 7.97 -52.49 -0.42 1.60 16 21 C 0.04 0.96 4.89 -17.35 -0.08 0.88 16 22 N -0.79 -22.13 12.50 55.55 0.69 -21.43 16 23 Si 1.07 22.55 30.01 -169.99 -5.10 17.45 16 24 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 27 C -0.15 -4.05 7.51 -38.44 -0.29 -4.34 16 28 H 0.04 0.52 6.42 -51.93 -0.33 0.18 16 29 H 0.03 0.42 6.55 -51.93 -0.34 0.08 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.06 0.68 6.16 -51.93 -0.32 0.36 16 32 H 0.06 0.70 6.54 -51.93 -0.34 0.36 16 33 H 0.07 1.11 7.53 -51.93 -0.39 0.72 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.60 6.86 -51.93 -0.36 0.25 16 36 H 0.07 0.57 6.81 -51.92 -0.35 0.22 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.70 5.54 -51.93 -0.29 0.41 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.85 7.32 -51.93 -0.38 0.47 16 42 H 0.10 1.38 6.00 -51.93 -0.31 1.07 16 43 H 0.12 2.11 3.30 -52.52 -0.17 1.93 16 44 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 46 H 0.30 8.73 6.74 -40.82 -0.28 8.45 16 47 H 0.12 3.44 6.34 -52.49 -0.33 3.11 16 LS Contribution 356.09 15.07 5.37 5.37 Total: -1.00 -31.97 356.09 -8.86 -40.83 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -6.79 Total: 9.21 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -2.00 Total: -20.60 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.34 Total: -32.37 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.67 Total: -19.89 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.10 Total: 17.45 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.97 -8.86 -40.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188675858.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.143 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds