Wall clock time and date at job start Tue Mar 31 2020 12:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00176 * 2 1 4 4 C 1.53001 * 109.46944 * 59.99913 * 3 2 1 5 5 C 1.53000 * 109.46924 * 299.99952 * 3 2 1 6 6 C 1.52995 * 109.47151 * 179.97438 * 3 2 1 7 7 H 1.08999 * 109.87865 * 57.65080 * 6 3 2 8 8 C 1.54327 * 110.01106 * 178.74758 * 6 3 2 9 9 C 1.55158 * 102.94217 * 141.68052 * 8 6 3 10 10 C 1.55124 * 101.48884 * 324.33291 * 9 8 6 11 11 N 1.47026 * 109.88641 * 296.63033 * 6 3 2 12 12 C 1.34784 * 125.64420 * 61.44729 * 11 6 3 13 13 O 1.21549 * 119.99569 * 6.52756 * 12 11 6 14 14 C 1.47882 * 119.99755 * 186.52214 * 12 11 6 15 15 C 1.39923 * 120.02700 * 9.20027 * 14 12 11 16 16 C 1.38325 * 120.35855 * 180.02562 * 15 14 12 17 17 C 1.37761 * 120.41267 * 359.97168 * 16 15 14 18 18 C 1.40744 * 120.03794 * 0.02562 * 17 16 15 19 19 C 1.41443 * 120.17825 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99487 * 332.21286 * 19 18 17 21 21 C 1.39936 * 119.99847 * 152.20948 * 19 18 17 22 22 N 1.30822 * 120.00301 * 333.73488 * 21 19 18 23 23 Si 1.86800 * 119.99749 * 153.73925 * 21 19 18 24 24 H 1.48502 * 109.47299 * 89.99546 * 23 21 19 25 25 H 1.48497 * 109.47251 * 209.99792 * 23 21 19 26 26 H 1.48505 * 109.46923 * 329.99689 * 23 21 19 27 27 C 1.38992 * 120.02217 * 189.49285 * 14 12 11 28 28 H 1.09001 * 109.47450 * 300.00386 * 1 2 3 29 29 H 1.09001 * 109.47058 * 59.99783 * 1 2 3 30 30 H 1.09002 * 109.47151 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46694 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.47353 * 299.99756 * 4 3 2 33 33 H 1.08992 * 109.47315 * 60.00581 * 4 3 2 34 34 H 1.08998 * 109.47203 * 305.67957 * 5 3 2 35 35 H 1.08997 * 109.47341 * 65.68668 * 5 3 2 36 36 H 1.09009 * 109.46839 * 185.68374 * 5 3 2 37 37 H 1.08999 * 110.72267 * 260.04697 * 8 6 3 38 38 H 1.09003 * 110.71852 * 23.32095 * 8 6 3 39 39 H 1.09001 * 111.00240 * 82.57341 * 9 8 6 40 40 H 1.09005 * 111.00218 * 206.38218 * 9 8 6 41 41 H 1.09002 * 110.49684 * 278.45313 * 10 9 8 42 42 H 1.09001 * 110.34266 * 156.05449 * 10 9 8 43 43 H 1.08001 * 119.81838 * 0.03678 * 15 14 12 44 44 H 1.08000 * 119.79642 * 179.97438 * 16 15 14 45 45 H 1.07999 * 119.98005 * 180.02562 * 17 16 15 46 46 H 0.97001 * 119.99749 * 357.06401 * 22 21 19 47 47 H 1.08001 * 120.20896 * 0.02562 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5587 2.0647 1.2493 5 6 1.5588 2.0647 -1.2493 6 6 3.5354 1.1846 0.0006 7 1 3.8619 0.6084 -0.8651 8 6 4.1764 2.5881 -0.0310 9 6 5.4012 2.4321 0.9086 10 6 4.8437 1.4635 1.9845 11 7 3.9845 0.5275 1.2369 12 6 3.6595 -0.7216 1.6252 13 8 3.0348 -1.4475 0.8766 14 6 4.0631 -1.2089 2.9618 15 6 4.6094 -0.3211 3.8952 16 6 4.9897 -0.7696 5.1472 17 6 4.8347 -2.0948 5.4900 18 6 4.2870 -3.0026 4.5644 19 6 4.1260 -4.3637 4.9135 20 1 4.7818 -4.8152 5.6431 21 6 3.1169 -5.1253 4.3134 22 7 2.0392 -4.5403 3.8577 23 14 3.3088 -6.9773 4.1631 24 1 2.7433 -7.6331 5.3695 25 1 2.5865 -7.4536 2.9563 26 1 4.7495 -7.3176 4.0442 27 6 3.9056 -2.5503 3.2897 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.0018 3.0606 1.2490 32 1 0.4721 2.1508 1.2492 33 1 1.8804 1.5239 2.1392 34 1 1.7908 1.4753 -2.1363 35 1 0.4840 2.2391 -1.1998 36 1 2.0800 3.0206 -1.3016 37 1 4.4955 2.8436 -1.0414 38 1 3.4854 3.3365 0.3571 39 1 6.2454 1.9898 0.3798 40 1 5.6781 3.3888 1.3516 41 1 4.2569 2.0101 2.7228 42 1 5.6587 0.9257 2.4690 43 1 4.7346 0.7201 3.6367 44 1 5.4108 -0.0765 5.8605 45 1 5.1336 -2.4373 6.4697 46 1 1.9202 -3.5846 3.9738 47 1 3.4892 -3.2403 2.5707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188675858.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:45 Heat of formation + Delta-G solvation = -60.251842 kcal Electronic energy + Delta-G solvation = -28276.776496 eV Core-core repulsion = 24617.244060 eV Total energy + Delta-G solvation = -3659.532436 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.74495 -39.94520 -38.74520 -38.03899 -35.85264 -34.04141 -32.58006 -31.57466 -31.21004 -29.33214 -28.30084 -27.78796 -26.93980 -25.60322 -23.25996 -22.99072 -22.41863 -21.12083 -20.10875 -19.48292 -17.84090 -17.68105 -17.29470 -16.87755 -16.57494 -16.07645 -15.93543 -15.73260 -15.49871 -15.21293 -14.77337 -14.42689 -14.31104 -14.19265 -14.02914 -13.98679 -13.81874 -13.42244 -13.03868 -12.99363 -12.93868 -12.85687 -12.63668 -12.46391 -12.29617 -12.09266 -12.02570 -11.96108 -11.77501 -11.64598 -11.34171 -11.17581 -10.87121 -10.58700 -10.41756 -9.72358 -9.57707 -9.44532 -9.20287 -6.50467 0.32650 0.88684 1.44046 1.57389 1.74693 2.07622 2.15243 2.30490 2.73796 2.87263 3.49359 3.54166 3.70182 3.83413 3.96447 4.01897 4.04864 4.17235 4.30519 4.33208 4.37561 4.44121 4.48420 4.57130 4.61991 4.63834 4.72407 4.77607 4.78197 4.85601 4.89645 4.96690 5.01040 5.06210 5.08405 5.14208 5.17009 5.25884 5.30915 5.41190 5.56136 5.60785 5.74478 5.80467 5.84288 6.17196 6.28873 6.48416 6.64229 6.69897 6.91691 7.40968 8.01455 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.004492 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.259786 B = 6231.735085 C = 7402.387823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.382 6.382 3 C 0.085 3.915 4 C -0.168 4.168 5 C -0.167 4.167 6 C 0.144 3.856 7 H 0.050 0.950 8 C -0.114 4.114 9 C -0.123 4.123 10 C 0.077 3.923 11 N -0.607 5.607 12 C 0.563 3.437 13 O -0.554 6.554 14 C -0.114 4.114 15 C -0.228 4.228 16 C -0.088 4.088 17 C -0.220 4.220 18 C 0.060 3.940 19 C -0.565 4.565 20 H 0.079 0.921 21 C -0.002 4.002 22 N -0.821 5.821 23 Si 1.117 2.883 24 H -0.252 1.252 25 H -0.277 1.277 26 H -0.261 1.261 27 C -0.182 4.182 28 H 0.040 0.960 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.060 0.940 33 H 0.032 0.968 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.121 0.879 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.169 0.831 44 H 0.143 0.857 45 H 0.106 0.894 46 H 0.277 0.723 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.858 19.637 -6.896 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.301 6.301 3 C 0.045 3.955 4 C -0.225 4.225 5 C -0.224 4.224 6 C 0.040 3.960 7 H 0.069 0.931 8 C -0.152 4.152 9 C -0.160 4.160 10 C -0.044 4.044 11 N -0.341 5.341 12 C 0.354 3.646 13 O -0.432 6.432 14 C -0.117 4.117 15 C -0.247 4.247 16 C -0.106 4.106 17 C -0.239 4.239 18 C 0.057 3.943 19 C -0.594 4.594 20 H 0.097 0.903 21 C -0.217 4.217 22 N -0.444 5.444 23 Si 0.934 3.066 24 H -0.176 1.176 25 H -0.203 1.203 26 H -0.185 1.185 27 C -0.203 4.203 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.139 0.861 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.186 0.814 44 H 0.161 0.839 45 H 0.124 0.876 46 H 0.089 0.911 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.831 17.675 -7.859 19.430 hybrid contribution 0.036 0.664 0.711 0.973 sum 1.867 18.339 -7.149 19.771 Atomic orbital electron populations 1.22746 0.82266 1.01739 1.00335 1.88444 1.19153 1.27574 1.94966 1.22167 0.93341 0.83900 0.96127 1.22366 1.01708 1.01481 0.96988 1.22352 1.02563 1.01453 0.96058 1.21764 0.91866 0.95535 0.86819 0.93148 1.22844 0.97434 0.92222 1.02686 1.22920 0.97214 1.00317 0.95575 1.23122 0.94065 0.91228 0.95964 1.48257 1.50242 1.12556 1.23032 1.18354 0.78839 0.80975 0.86461 1.90743 1.41027 1.55910 1.55535 1.19808 1.03082 0.94522 0.94278 1.22082 1.07145 1.00995 0.94461 1.21067 0.98244 0.94876 0.96369 1.21415 1.09862 0.94123 0.98544 1.17955 0.91444 0.94106 0.90766 1.20736 1.17625 0.95887 1.25108 0.90324 1.28502 0.90635 1.12595 0.89993 1.70576 1.24671 1.14784 1.34334 0.83044 0.77827 0.67128 0.78608 1.17580 1.20253 1.18474 1.21133 1.08015 0.94762 0.96380 0.94189 0.91942 0.91984 0.88149 0.92133 0.94841 0.92635 0.91435 0.88200 0.87476 0.87790 0.90580 0.86064 0.89658 0.89618 0.81407 0.83925 0.87588 0.91100 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.21 113.37 1.16 1.97 16 2 O -0.38 -14.75 7.05 -126.21 -0.89 -15.64 16 3 C 0.08 2.30 0.62 -10.79 -0.01 2.29 16 4 C -0.17 -4.04 7.83 71.98 0.56 -3.48 16 5 C -0.17 -3.13 7.92 71.98 0.57 -2.56 16 6 C 0.14 3.89 2.51 45.34 0.11 4.00 16 7 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 8 C -0.11 -1.62 5.08 31.78 0.16 -1.46 16 9 C -0.12 -1.70 7.10 32.06 0.23 -1.48 16 10 C 0.08 1.79 4.90 86.93 0.43 2.22 16 11 N -0.61 -20.39 2.18 -791.01 -1.73 -22.12 16 12 C 0.56 26.52 7.36 86.80 0.64 27.16 16 13 O -0.55 -30.99 13.92 18.90 0.26 -30.73 16 14 C -0.11 -5.65 5.85 -20.13 -0.12 -5.77 16 15 C -0.23 -9.20 8.31 22.70 0.19 -9.02 16 16 C -0.09 -3.54 10.01 22.18 0.22 -3.32 16 17 C -0.22 -10.68 9.78 22.77 0.22 -10.46 16 18 C 0.06 3.40 5.23 -21.32 -0.11 3.28 16 19 C -0.57 -32.58 8.97 23.47 0.21 -32.37 16 20 H 0.08 4.32 7.97 -2.91 -0.02 4.30 16 21 C 0.00 -0.11 4.89 85.25 0.42 0.31 16 22 N -0.82 -50.11 12.50 21.82 0.27 -49.84 16 23 Si 1.12 47.66 30.01 68.60 2.06 49.72 16 24 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 25 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 27 C -0.18 -10.63 7.51 23.01 0.17 -10.45 16 28 H 0.04 1.18 6.42 -2.39 -0.02 1.17 16 29 H 0.06 1.54 6.55 -2.39 -0.02 1.53 16 30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.10 1.61 6.16 -2.39 -0.01 1.59 16 32 H 0.06 1.38 6.54 -2.39 -0.02 1.37 16 33 H 0.03 1.03 7.53 -2.39 -0.02 1.01 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.16 6.86 -2.39 -0.02 1.15 16 36 H 0.10 1.19 6.81 -2.38 -0.02 1.17 16 37 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.10 1.05 5.54 -2.39 -0.01 1.04 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.09 1.72 7.32 -2.39 -0.02 1.71 16 42 H 0.09 2.16 6.00 -2.39 -0.01 2.15 16 43 H 0.17 5.16 3.30 -2.94 -0.01 5.15 16 44 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 45 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 46 H 0.28 17.84 6.74 -92.71 -0.62 17.21 16 47 H 0.07 4.87 6.34 -2.91 -0.02 4.85 16 Total: -1.00 -81.28 356.09 6.16 -75.12 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: 1.12 Total: 32.61 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 5.06 Total: -39.13 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -1.45 Total: -71.95 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -0.63 Total: -46.36 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.06 Total: 49.72 kcal Total: -81.28 6.16 -75.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188675858.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.864 kcal (2) G-P(sol) polarization free energy of solvation -81.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds