Wall clock time and date at job start Tue Mar 31 2020 12:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53010 * 109.46863 * 2 1 4 4 C 1.53001 * 109.46997 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46890 * 179.97438 * 4 3 2 6 6 C 1.36871 * 120.00261 * 270.29561 * 5 4 3 7 7 H 1.08004 * 119.99773 * 140.81312 * 6 5 4 8 8 C 1.39047 * 119.99923 * 320.82574 * 6 5 4 9 9 N 1.31360 * 119.99667 * 341.40970 * 8 6 5 10 10 Si 1.86803 * 119.99908 * 161.41922 * 8 6 5 11 11 H 1.48496 * 109.47367 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47028 * 119.99782 * 10 8 6 13 13 H 1.48506 * 109.46585 * 239.99699 * 10 8 6 14 14 C 1.34773 * 119.99681 * 90.29552 * 5 4 3 15 15 O 1.21592 * 120.00293 * 354.40292 * 14 5 4 16 16 C 1.47745 * 120.00090 * 174.40756 * 14 5 4 17 17 C 1.39678 * 120.12009 * 333.01618 * 16 14 5 18 18 C 1.37939 * 119.95584 * 179.97438 * 17 16 14 19 19 C 1.38308 * 120.21695 * 0.02562 * 18 17 16 20 20 C 1.38827 * 120.24702 * 0.02562 * 19 18 17 21 21 O 1.35911 * 119.98051 * 179.97438 * 20 19 18 22 22 C 1.42898 * 116.99848 * 5.27322 * 21 20 19 23 23 C 1.53782 * 113.61846 * 158.56075 * 22 21 20 24 24 C 1.53783 * 87.17259 * 89.15156 * 23 22 21 25 25 C 1.53781 * 87.08038 * 25.39253 * 24 23 22 26 26 C 1.38475 * 120.04106 * 0.25213 * 20 19 18 27 27 H 1.09004 * 109.46908 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47644 * 299.99864 * 1 2 3 29 29 H 1.09003 * 109.47048 * 60.00353 * 1 2 3 30 30 H 1.08997 * 109.47828 * 240.00472 * 2 1 3 31 31 H 1.08997 * 109.47471 * 119.99747 * 2 1 3 32 32 H 1.08990 * 109.46880 * 59.99668 * 3 2 1 33 33 H 1.08997 * 109.46871 * 300.00115 * 3 2 1 34 34 H 1.08994 * 109.46904 * 60.00217 * 4 3 2 35 35 H 1.08997 * 109.47604 * 299.99911 * 4 3 2 36 36 H 0.97007 * 119.99550 * 180.02562 * 9 8 6 37 37 H 1.07997 * 120.02121 * 0.02562 * 17 16 14 38 38 H 1.08001 * 119.89459 * 179.97438 * 18 17 16 39 39 H 1.07995 * 119.87174 * 180.02562 * 19 18 17 40 40 H 1.08995 * 112.91093 * 27.30475 * 22 21 20 41 41 H 1.09004 * 113.61023 * 334.56869 * 23 22 21 42 42 H 1.08995 * 113.61643 * 203.74707 * 23 22 21 43 43 H 1.09004 * 113.61034 * 139.94053 * 24 23 22 44 44 H 1.08997 * 113.61983 * 270.84241 * 24 23 22 45 45 H 1.09006 * 113.61105 * 89.11009 * 25 24 23 46 46 H 1.08991 * 113.61448 * 219.93063 * 25 24 23 47 47 H 1.07994 * 120.10880 * 179.72797 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.2810 3.4705 -1.1856 7 1 4.0226 4.5141 -1.2883 8 6 4.8399 2.7838 -2.2577 9 7 5.4830 1.6569 -2.0524 10 14 4.6762 3.4637 -3.9899 11 1 3.9118 4.7362 -3.9520 12 1 6.0272 3.7139 -4.5530 13 1 3.9590 2.4811 -4.8415 14 6 4.2879 3.4579 1.1669 15 8 3.9946 2.9218 2.2182 16 6 4.8961 4.8043 1.1689 17 6 5.7277 5.1993 0.1185 18 6 6.2934 6.4574 0.1235 19 6 6.0404 7.3302 1.1661 20 6 5.2161 6.9463 2.2151 21 8 4.9716 7.8081 3.2372 22 6 5.4996 9.1300 3.1116 23 6 4.7812 10.1666 3.9915 24 6 5.7894 9.8137 5.0978 25 6 6.7484 9.3799 3.9766 26 6 4.6474 5.6837 2.2236 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6765 1.9564 -0.8900 34 1 3.9336 0.9287 -0.8891 35 1 3.9330 0.9290 0.8908 36 1 5.8732 1.1780 -2.8003 37 1 5.9271 4.5205 -0.6975 38 1 6.9366 6.7617 -0.6890 39 1 6.4858 8.3140 1.1642 40 1 5.6161 9.4435 2.0742 41 1 3.7537 9.8958 4.2346 42 1 4.8743 11.1892 3.6259 43 1 6.1395 10.6784 5.6615 44 1 5.4660 8.9927 5.7377 45 1 7.3802 10.1871 3.6059 46 1 7.3101 8.4750 4.2083 47 1 4.0095 5.3824 3.0412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193187235.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:35 Heat of formation + Delta-G solvation = -27.353241 kcal Electronic energy + Delta-G solvation = -26647.905756 eV Core-core repulsion = 22989.799911 eV Total energy + Delta-G solvation = -3658.105846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.25805 -39.06804 -37.59136 -35.69520 -35.29684 -34.00857 -31.59473 -30.57785 -29.58220 -28.04057 -25.83651 -25.63833 -25.08140 -23.66277 -22.03170 -21.74898 -20.48404 -19.92246 -18.94144 -18.08807 -16.75674 -16.00273 -15.90210 -15.46368 -15.06529 -14.76666 -14.72828 -14.44660 -14.27511 -14.02613 -13.71077 -13.35482 -12.92663 -12.78737 -12.68331 -12.60247 -12.24635 -12.12759 -11.95722 -11.57849 -11.39521 -11.17814 -11.11371 -11.04668 -10.90319 -10.68838 -10.55836 -10.49964 -10.38159 -10.28453 -10.18989 -10.10524 -9.72467 -9.13229 -8.57381 -8.34072 -7.66998 -7.51653 -6.46514 -4.14942 1.60555 2.04675 3.04501 3.16134 3.19839 3.26759 3.81599 4.01565 4.40351 4.45075 4.56188 4.69188 4.70291 4.82426 4.97402 5.15505 5.34063 5.42609 5.43924 5.49924 5.54499 5.57509 5.67479 5.73366 5.85553 5.90403 5.94960 6.01307 6.07572 6.10750 6.13713 6.25620 6.31604 6.39310 6.44795 6.52365 6.58599 6.72404 6.75838 6.84620 7.05394 7.14659 7.25593 7.25850 7.39735 7.46189 7.82329 7.86418 8.30874 8.95889 9.42195 9.85918 10.52588 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014021 B = 0.003585 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.553040 B = 7809.314886 C = 9202.535919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.127 4.127 4 C 0.113 3.887 5 N -0.426 5.426 6 C -0.335 4.335 7 H 0.095 0.905 8 C 0.044 3.956 9 N -0.853 5.853 10 Si 0.909 3.091 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.278 1.278 14 C 0.505 3.495 15 O -0.600 6.600 16 C -0.059 4.059 17 C -0.103 4.103 18 C -0.108 4.108 19 C -0.201 4.201 20 C 0.102 3.898 21 O -0.297 6.297 22 C 0.057 3.943 23 C -0.137 4.137 24 C -0.135 4.135 25 C -0.162 4.162 26 C -0.110 4.110 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.054 0.946 36 H 0.272 0.728 37 H 0.169 0.831 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.077 10.754 3.606 11.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.010 4.010 5 N -0.142 5.142 6 C -0.463 4.463 7 H 0.112 0.888 8 C -0.163 4.163 9 N -0.489 5.489 10 Si 0.735 3.265 11 H -0.189 1.189 12 H -0.205 1.205 13 H -0.203 1.203 14 C 0.294 3.706 15 O -0.486 6.486 16 C -0.062 4.062 17 C -0.121 4.121 18 C -0.126 4.126 19 C -0.220 4.220 20 C 0.058 3.942 21 O -0.211 6.211 22 C 0.000 4.000 23 C -0.175 4.175 24 C -0.173 4.173 25 C -0.200 4.200 26 C -0.130 4.130 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.186 0.814 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.113 0.887 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.095 0.905 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.236 10.255 4.150 11.065 hybrid contribution 0.148 0.486 -1.145 1.253 sum -0.087 10.741 3.006 11.154 Atomic orbital electron populations 1.21755 0.96646 1.00657 1.01500 1.21431 0.94992 0.97747 1.01578 1.21891 0.97731 0.95492 1.01484 1.21465 0.91396 0.84620 1.03498 1.43301 1.54587 1.12072 1.04277 1.19535 1.40981 0.97361 0.88467 0.88781 1.25405 0.94343 0.96393 1.00204 1.69879 1.30285 1.16364 1.32341 0.86134 0.78426 0.79520 0.82380 1.18923 1.20461 1.20334 1.18292 0.81829 0.86219 0.84238 1.90618 1.57408 1.68825 1.31789 1.19873 0.97914 0.94436 0.93975 1.22409 0.94521 0.96273 0.98928 1.20949 0.99733 0.94281 0.97611 1.21223 1.03334 1.00978 0.96476 1.18712 0.97068 0.90363 0.88061 1.86035 1.73121 1.20757 1.41193 1.23299 0.95189 0.82247 0.99234 1.23114 1.00076 0.97796 0.96467 1.22811 0.96695 1.01352 0.96413 1.23484 0.96790 1.02246 0.97479 1.20419 1.02021 0.90753 0.99830 0.93440 0.93063 0.93047 0.92260 0.92404 0.92839 0.92217 0.87645 0.92741 0.91792 0.81412 0.86175 0.86205 0.89864 0.90321 0.88742 0.91464 0.89641 0.89220 0.90510 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.15 0.37 -1.75 16 2 C -0.12 -2.01 5.93 -26.73 -0.16 -2.17 16 3 C -0.13 -2.59 5.54 -26.73 -0.15 -2.74 16 4 C 0.11 2.67 4.96 -4.04 -0.02 2.65 16 5 N -0.43 -10.61 2.50 -115.92 -0.29 -10.90 16 6 C -0.34 -8.10 5.94 -15.00 -0.09 -8.19 16 7 H 0.09 2.25 6.62 -52.48 -0.35 1.90 16 8 C 0.04 1.03 4.84 -17.45 -0.08 0.94 16 9 N -0.85 -21.22 11.39 55.50 0.63 -20.59 16 10 Si 0.91 18.41 29.59 -169.99 -5.03 13.38 16 11 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 12 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 13 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 14 C 0.50 12.82 7.43 -12.38 -0.09 12.73 16 15 O -0.60 -16.46 16.28 5.28 0.09 -16.38 16 16 C -0.06 -1.32 5.54 -104.98 -0.58 -1.91 16 17 C -0.10 -2.12 7.88 -39.15 -0.31 -2.43 16 18 C -0.11 -1.85 10.02 -39.67 -0.40 -2.25 16 19 C -0.20 -3.25 9.01 -39.34 -0.35 -3.60 16 20 C 0.10 1.83 6.67 -39.28 -0.26 1.56 16 21 O -0.30 -4.78 10.07 -19.46 -0.20 -4.98 16 22 C 0.06 0.69 3.70 -25.83 -0.10 0.59 16 23 C -0.14 -1.32 7.91 -25.92 -0.20 -1.53 16 24 C -0.14 -1.29 8.02 -25.92 -0.21 -1.49 16 25 C -0.16 -1.66 7.92 -25.83 -0.20 -1.86 16 26 C -0.11 -2.28 9.53 -39.00 -0.37 -2.65 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.11 2.58 5.52 -51.93 -0.29 2.30 16 35 H 0.05 1.33 7.50 -51.93 -0.39 0.95 16 36 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 37 H 0.17 3.74 5.26 -52.49 -0.28 3.46 16 38 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.12 1.57 5.92 -52.49 -0.31 1.26 16 40 H 0.08 0.93 6.04 -51.93 -0.31 0.61 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.13 2.73 7.87 -52.49 -0.41 2.32 16 LS Contribution 378.86 15.07 5.71 5.71 Total: -1.00 -28.06 378.86 -9.69 -37.76 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -7.39 Total: 10.10 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -3.21 Total: -14.10 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 0.34 Total: -31.49 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.11 Total: -21.36 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.06 -9.69 -37.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193187235.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.404 kcal (2) G-P(sol) polarization free energy of solvation -28.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds