Wall clock time and date at job start Tue Mar 31 2020 12:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53010 * 109.46863 * 2 1 4 4 C 1.53001 * 109.46997 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46890 * 179.97438 * 4 3 2 6 6 C 1.36871 * 120.00261 * 270.29561 * 5 4 3 7 7 H 1.08004 * 119.99773 * 140.81312 * 6 5 4 8 8 C 1.39047 * 119.99923 * 320.82574 * 6 5 4 9 9 N 1.31360 * 119.99667 * 341.40970 * 8 6 5 10 10 Si 1.86803 * 119.99908 * 161.41922 * 8 6 5 11 11 H 1.48496 * 109.47367 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47028 * 119.99782 * 10 8 6 13 13 H 1.48506 * 109.46585 * 239.99699 * 10 8 6 14 14 C 1.34773 * 119.99681 * 90.29552 * 5 4 3 15 15 O 1.21592 * 120.00293 * 354.40292 * 14 5 4 16 16 C 1.47745 * 120.00090 * 174.40756 * 14 5 4 17 17 C 1.39678 * 120.12009 * 333.01618 * 16 14 5 18 18 C 1.37939 * 119.95584 * 179.97438 * 17 16 14 19 19 C 1.38308 * 120.21695 * 0.02562 * 18 17 16 20 20 C 1.38827 * 120.24702 * 0.02562 * 19 18 17 21 21 O 1.35911 * 119.98051 * 179.97438 * 20 19 18 22 22 C 1.42898 * 116.99848 * 5.27322 * 21 20 19 23 23 C 1.53782 * 113.61846 * 158.56075 * 22 21 20 24 24 C 1.53783 * 87.17259 * 89.15156 * 23 22 21 25 25 C 1.53781 * 87.08038 * 25.39253 * 24 23 22 26 26 C 1.38475 * 120.04106 * 0.25213 * 20 19 18 27 27 H 1.09004 * 109.46908 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47644 * 299.99864 * 1 2 3 29 29 H 1.09003 * 109.47048 * 60.00353 * 1 2 3 30 30 H 1.08997 * 109.47828 * 240.00472 * 2 1 3 31 31 H 1.08997 * 109.47471 * 119.99747 * 2 1 3 32 32 H 1.08990 * 109.46880 * 59.99668 * 3 2 1 33 33 H 1.08997 * 109.46871 * 300.00115 * 3 2 1 34 34 H 1.08994 * 109.46904 * 60.00217 * 4 3 2 35 35 H 1.08997 * 109.47604 * 299.99911 * 4 3 2 36 36 H 0.97007 * 119.99550 * 180.02562 * 9 8 6 37 37 H 1.07997 * 120.02121 * 0.02562 * 17 16 14 38 38 H 1.08001 * 119.89459 * 179.97438 * 18 17 16 39 39 H 1.07995 * 119.87174 * 180.02562 * 19 18 17 40 40 H 1.08995 * 112.91093 * 27.30475 * 22 21 20 41 41 H 1.09004 * 113.61023 * 334.56869 * 23 22 21 42 42 H 1.08995 * 113.61643 * 203.74707 * 23 22 21 43 43 H 1.09004 * 113.61034 * 139.94053 * 24 23 22 44 44 H 1.08997 * 113.61983 * 270.84241 * 24 23 22 45 45 H 1.09006 * 113.61105 * 89.11009 * 25 24 23 46 46 H 1.08991 * 113.61448 * 219.93063 * 25 24 23 47 47 H 1.07994 * 120.10880 * 179.72797 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.2810 3.4705 -1.1856 7 1 4.0226 4.5141 -1.2883 8 6 4.8399 2.7838 -2.2577 9 7 5.4830 1.6569 -2.0524 10 14 4.6762 3.4637 -3.9899 11 1 3.9118 4.7362 -3.9520 12 1 6.0272 3.7139 -4.5530 13 1 3.9590 2.4811 -4.8415 14 6 4.2879 3.4579 1.1669 15 8 3.9946 2.9218 2.2182 16 6 4.8961 4.8043 1.1689 17 6 5.7277 5.1993 0.1185 18 6 6.2934 6.4574 0.1235 19 6 6.0404 7.3302 1.1661 20 6 5.2161 6.9463 2.2151 21 8 4.9716 7.8081 3.2372 22 6 5.4996 9.1300 3.1116 23 6 4.7812 10.1666 3.9915 24 6 5.7894 9.8137 5.0978 25 6 6.7484 9.3799 3.9766 26 6 4.6474 5.6837 2.2236 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6765 1.9564 -0.8900 34 1 3.9336 0.9287 -0.8891 35 1 3.9330 0.9290 0.8908 36 1 5.8732 1.1780 -2.8003 37 1 5.9271 4.5205 -0.6975 38 1 6.9366 6.7617 -0.6890 39 1 6.4858 8.3140 1.1642 40 1 5.6161 9.4435 2.0742 41 1 3.7537 9.8958 4.2346 42 1 4.8743 11.1892 3.6259 43 1 6.1395 10.6784 5.6615 44 1 5.4660 8.9927 5.7377 45 1 7.3802 10.1871 3.6059 46 1 7.3101 8.4750 4.2083 47 1 4.0095 5.3824 3.0412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193187235.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:34 Heat of formation + Delta-G solvation = -40.404385 kcal Electronic energy + Delta-G solvation = -26648.471696 eV Core-core repulsion = 22989.799911 eV Total energy + Delta-G solvation = -3658.671786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.53599 -40.69983 -38.94700 -37.22622 -36.87043 -35.60054 -33.47610 -32.10418 -31.07203 -29.59631 -27.12182 -26.60444 -26.47183 -25.18083 -23.45684 -23.23550 -21.99870 -21.44607 -20.44679 -19.41587 -18.35046 -17.64056 -17.05544 -16.88076 -16.50284 -16.32132 -16.25016 -15.82199 -15.69377 -15.58338 -15.12214 -14.84060 -14.47373 -14.30454 -14.03201 -13.83382 -13.64838 -13.31476 -13.23934 -13.13162 -13.07751 -12.81364 -12.52649 -12.28250 -12.15038 -12.07109 -12.00580 -11.97479 -11.79775 -11.74657 -11.43778 -11.19396 -11.08235 -10.98682 -10.47828 -9.90831 -9.47572 -9.07904 -8.31248 -6.06247 0.05046 0.55505 1.43416 1.50361 1.62437 2.05460 2.10692 2.31813 2.86919 2.93305 3.17744 3.61029 3.62871 3.86889 3.91874 3.98111 4.03194 4.08518 4.17526 4.25710 4.29127 4.36718 4.51799 4.53628 4.64445 4.77705 4.78669 4.82414 4.83861 4.86308 4.96872 5.01453 5.02954 5.05367 5.06874 5.15085 5.15956 5.33186 5.34024 5.39446 5.40476 5.43838 5.54481 5.59818 5.71453 5.89530 5.95812 6.41718 6.54455 7.06807 7.48775 7.94251 8.69968 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014021 B = 0.003585 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.553040 B = 7809.314886 C = 9202.535919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.115 4.115 4 C 0.114 3.886 5 N -0.432 5.432 6 C -0.345 4.345 7 H 0.095 0.905 8 C 0.012 3.988 9 N -0.885 5.885 10 Si 0.977 3.023 11 H -0.259 1.259 12 H -0.272 1.272 13 H -0.278 1.278 14 C 0.485 3.515 15 O -0.638 6.638 16 C -0.086 4.086 17 C -0.117 4.117 18 C -0.093 4.093 19 C -0.183 4.183 20 C 0.112 3.888 21 O -0.313 6.313 22 C 0.034 3.966 23 C -0.129 4.129 24 C -0.137 4.137 25 C -0.156 4.156 26 C -0.132 4.132 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.035 0.965 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.031 0.969 36 H 0.276 0.724 37 H 0.149 0.851 38 H 0.159 0.841 39 H 0.164 0.836 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.126 0.874 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.120 0.880 46 H 0.058 0.942 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.566 13.861 2.035 14.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.154 4.154 4 C -0.009 4.009 5 N -0.147 5.147 6 C -0.473 4.473 7 H 0.113 0.887 8 C -0.193 4.193 9 N -0.521 5.521 10 Si 0.800 3.200 11 H -0.182 1.182 12 H -0.197 1.197 13 H -0.203 1.203 14 C 0.276 3.724 15 O -0.529 6.529 16 C -0.089 4.089 17 C -0.136 4.136 18 C -0.111 4.111 19 C -0.201 4.201 20 C 0.067 3.933 21 O -0.228 6.228 22 C -0.022 4.022 23 C -0.166 4.166 24 C -0.175 4.175 25 C -0.193 4.193 26 C -0.152 4.152 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.166 0.834 38 H 0.176 0.824 39 H 0.181 0.819 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.145 0.855 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.139 0.861 46 H 0.077 0.923 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.405 13.373 2.578 13.625 hybrid contribution 0.019 -0.383 -0.561 0.680 sum 0.424 12.990 2.016 13.153 Atomic orbital electron populations 1.21711 0.94146 1.02402 1.01739 1.21411 0.97141 0.94957 1.01820 1.21765 0.95321 0.97947 1.00321 1.21465 0.93492 0.84184 1.01782 1.43560 1.54137 1.12359 1.04661 1.19691 1.41638 0.97625 0.88328 0.88712 1.26151 0.93327 0.96383 1.03404 1.69970 1.30915 1.17582 1.33621 0.85109 0.78539 0.78938 0.77376 1.18236 1.19724 1.20324 1.18943 0.81854 0.87736 0.83903 1.90554 1.59249 1.70141 1.32913 1.19711 0.99753 0.93494 0.95905 1.22205 0.95531 0.97787 0.98057 1.21301 0.98704 0.92464 0.98630 1.21621 1.01498 1.02335 0.94665 1.18685 0.96237 0.89559 0.88828 1.86036 1.73532 1.22566 1.40640 1.23819 0.96934 0.80519 1.00949 1.23195 0.99194 0.98546 0.95682 1.22809 0.96619 1.01597 0.96434 1.23529 0.96228 1.02471 0.97109 1.20308 1.03268 0.92435 0.99209 0.90930 0.93162 0.92510 0.91704 0.92495 0.94649 0.92468 0.88467 0.95000 0.91407 0.83372 0.82371 0.81916 0.88232 0.91492 0.85549 0.89123 0.91689 0.86142 0.92293 0.87222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.91 71.98 0.71 -3.21 16 2 C -0.12 -3.92 5.93 30.60 0.18 -3.74 16 3 C -0.11 -4.91 5.54 30.60 0.17 -4.74 16 4 C 0.11 5.70 4.96 86.38 0.43 6.12 16 5 N -0.43 -22.78 2.50 -638.93 -1.60 -24.38 16 6 C -0.35 -17.19 5.94 84.10 0.50 -16.69 16 7 H 0.10 4.63 6.62 -2.91 -0.02 4.61 16 8 C 0.01 0.55 4.84 84.96 0.41 0.96 16 9 N -0.88 -44.96 11.39 21.68 0.25 -44.71 16 10 Si 0.98 37.32 29.59 68.60 2.03 39.35 16 11 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 12 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 13 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 14 C 0.48 26.41 7.43 86.76 0.64 27.06 16 15 O -0.64 -37.99 16.28 -4.01 -0.07 -38.05 16 16 C -0.09 -4.05 5.54 -20.10 -0.11 -4.17 16 17 C -0.12 -4.88 7.88 22.55 0.18 -4.70 16 18 C -0.09 -2.97 10.02 22.22 0.22 -2.75 16 19 C -0.18 -5.34 9.01 22.43 0.20 -5.14 16 20 C 0.11 3.93 6.67 22.47 0.15 4.08 16 21 O -0.31 -9.84 10.07 -92.55 -0.93 -10.77 16 22 C 0.03 0.71 3.70 31.18 0.12 0.83 16 23 C -0.13 -2.10 7.91 31.12 0.25 -1.86 16 24 C -0.14 -2.28 8.02 31.12 0.25 -2.03 16 25 C -0.16 -2.69 7.92 31.18 0.25 -2.44 16 26 C -0.13 -5.73 9.53 22.64 0.22 -5.52 16 27 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.10 5.00 5.52 -2.39 -0.01 4.99 16 35 H 0.03 1.68 7.50 -2.39 -0.02 1.67 16 36 H 0.28 13.08 8.31 -92.70 -0.77 12.31 16 37 H 0.15 6.76 5.26 -2.91 -0.02 6.74 16 38 H 0.16 3.85 8.06 -2.91 -0.02 3.82 16 39 H 0.16 3.38 5.92 -2.91 -0.02 3.36 16 40 H 0.10 1.76 6.04 -2.39 -0.01 1.74 16 41 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 44 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.12 1.36 8.14 -2.38 -0.02 1.34 16 46 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.11 5.05 7.87 -2.91 -0.02 5.03 16 Total: -1.00 -65.74 378.86 5.40 -60.34 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: 0.95 Total: 36.15 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: 4.76 Total: -17.93 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -1.35 Total: -69.09 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: -1.00 Total: -48.82 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.35 kcal Total: -65.74 5.40 -60.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193187235.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.935 kcal (2) G-P(sol) polarization free energy of solvation -65.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds