Wall clock time and date at job start Tue Mar 31 2020 12:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46778 * 2 1 4 4 C 1.53001 * 109.47256 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47352 * 179.97438 * 4 3 2 6 6 C 1.36870 * 120.00511 * 263.80288 * 5 4 3 7 7 H 1.08003 * 119.99985 * 116.52178 * 6 5 4 8 8 C 1.39049 * 120.00098 * 296.53033 * 6 5 4 9 9 N 1.31363 * 119.99993 * 159.32571 * 8 6 5 10 10 Si 1.86804 * 120.00001 * 339.32100 * 8 6 5 11 11 H 1.48494 * 109.46944 * 86.12699 * 10 8 6 12 12 H 1.48496 * 109.47003 * 206.12631 * 10 8 6 13 13 H 1.48497 * 109.47066 * 326.12706 * 10 8 6 14 14 C 1.34780 * 119.99745 * 83.80940 * 5 4 3 15 15 O 1.21592 * 120.00150 * 11.20507 * 14 5 4 16 16 C 1.47727 * 120.00037 * 191.20842 * 14 5 4 17 17 C 1.39642 * 120.15410 * 153.26514 * 16 14 5 18 18 C 1.37932 * 119.85155 * 180.02562 * 17 16 14 19 19 C 1.38381 * 120.14944 * 0.02562 * 18 17 16 20 20 C 1.50698 * 119.84741 * 179.97438 * 19 18 17 21 21 C 1.52995 * 113.00073 * 281.15792 * 20 19 18 22 22 C 1.54033 * 113.81609 * 149.16954 * 20 19 18 23 23 O 1.44179 * 85.51837 * 223.19931 * 22 20 19 24 24 C 1.44167 * 93.34057 * 24.19344 * 23 22 20 25 25 C 1.38376 * 120.30211 * 0.24953 * 19 18 17 26 26 C 1.37935 * 120.15446 * 359.49198 * 25 19 18 27 27 H 1.09005 * 109.47023 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47336 * 299.99616 * 1 2 3 29 29 H 1.08995 * 109.47463 * 60.00309 * 1 2 3 30 30 H 1.08997 * 109.47336 * 240.00384 * 2 1 3 31 31 H 1.08995 * 109.47463 * 119.99691 * 2 1 3 32 32 H 1.08997 * 109.47351 * 59.99869 * 3 2 1 33 33 H 1.09003 * 109.47209 * 300.00028 * 3 2 1 34 34 H 1.09011 * 109.46950 * 59.99762 * 4 3 2 35 35 H 1.08997 * 109.47044 * 300.00627 * 4 3 2 36 36 H 0.96998 * 120.00296 * 179.97438 * 9 8 6 37 37 H 1.08007 * 120.07461 * 0.04412 * 17 16 14 38 38 H 1.07999 * 119.92823 * 179.97438 * 18 17 16 39 39 H 1.09005 * 109.47125 * 60.00211 * 21 20 19 40 40 H 1.09001 * 109.47135 * 179.97438 * 21 20 19 41 41 H 1.08993 * 109.47194 * 299.99973 * 21 20 19 42 42 H 1.09002 * 113.86359 * 337.34440 * 22 20 19 43 43 H 1.08998 * 113.86405 * 109.04596 * 22 20 19 44 44 H 1.09005 * 113.86601 * 221.65846 * 24 23 22 45 45 H 1.09003 * 113.98217 * 89.96707 * 24 23 22 46 46 H 1.08005 * 119.92341 * 179.74722 * 25 19 18 47 47 H 1.08001 * 120.08128 * 180.25284 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 7 4.0581 2.8238 0.0000 6 6 4.4074 3.4258 -1.1785 7 1 3.8600 4.2892 -1.5269 8 6 5.4669 2.9257 -1.9275 9 7 5.5592 3.2105 -3.2065 10 14 6.7590 1.8489 -1.1147 11 1 6.3027 0.4358 -1.1239 12 1 8.0377 1.9611 -1.8613 13 1 6.9636 2.2939 0.2872 14 6 4.1636 3.5018 1.1601 15 8 4.0520 2.9153 2.2194 16 6 4.4146 4.9575 1.1447 17 6 3.9901 5.7538 2.2105 18 6 4.2272 7.1124 2.1894 19 6 4.8837 7.6868 1.1151 20 6 5.1387 9.1719 1.0989 21 6 3.9057 9.9859 0.7018 22 6 6.4216 9.5746 0.3474 23 8 6.6505 10.4739 1.4509 24 6 5.8491 9.6949 2.3617 25 6 5.3020 6.9045 0.0531 26 6 5.0761 5.5438 0.0636 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6765 1.9564 -0.8900 34 1 3.9337 0.9286 -0.8892 35 1 3.9329 0.9289 0.8908 36 1 6.2984 2.8620 -3.7289 37 1 3.4775 5.3068 3.0495 38 1 3.8991 7.7295 3.0127 39 1 3.1008 9.7960 1.4119 40 1 4.1532 11.0474 0.7091 41 1 3.5844 9.6943 -0.2981 42 1 7.1575 8.7741 0.2710 43 1 6.2372 10.0785 -0.6013 44 1 5.2106 10.2944 3.0106 45 1 6.4084 8.9307 2.9015 46 1 5.8103 7.3598 -0.7841 47 1 5.4068 4.9338 -0.7640 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196218881.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:30 Heat of formation + Delta-G solvation = -26.197802 kcal Electronic energy + Delta-G solvation = -27036.030078 eV Core-core repulsion = 23377.974336 eV Total energy + Delta-G solvation = -3658.055742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.92524 -39.41202 -37.57899 -35.54205 -34.26807 -32.86112 -32.06045 -30.48686 -29.68391 -28.23269 -26.64510 -26.17530 -25.09238 -23.83277 -22.19352 -21.75162 -20.68937 -19.50067 -18.85004 -17.82027 -16.62221 -16.17118 -15.99698 -15.85121 -15.25595 -14.87704 -14.70802 -14.25391 -13.93203 -13.75316 -13.49826 -13.36076 -13.21459 -12.89519 -12.77314 -12.61574 -12.55039 -12.32260 -12.08366 -12.03147 -11.76071 -11.47133 -11.29064 -11.09050 -10.90541 -10.78049 -10.66215 -10.58594 -10.34403 -10.31870 -10.06699 -9.92697 -9.69875 -9.25003 -8.69745 -8.38086 -8.14943 -7.51270 -6.60481 -4.39902 1.52629 1.99339 3.04713 3.16477 3.29308 3.58376 3.72456 4.07289 4.10735 4.28886 4.48233 4.69542 4.82623 4.99490 5.11928 5.31807 5.32415 5.33965 5.42231 5.46890 5.49345 5.50479 5.67288 5.71237 5.77088 5.80472 5.87413 5.97584 6.07631 6.09407 6.10025 6.12972 6.14891 6.19650 6.24129 6.27365 6.41622 6.45605 6.48849 6.66242 6.77751 6.86926 6.91090 7.10544 7.24535 7.40114 7.59048 8.02271 8.15735 8.84270 9.17508 9.58306 10.44755 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.003966 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.466241 B = 7058.310394 C = 8065.456640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.126 4.126 4 C 0.109 3.891 5 N -0.469 5.469 6 C -0.352 4.352 7 H 0.100 0.900 8 C 0.079 3.921 9 N -0.850 5.850 10 Si 0.862 3.138 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.260 1.260 14 C 0.537 3.463 15 O -0.587 6.587 16 C -0.111 4.111 17 C -0.074 4.074 18 C -0.140 4.140 19 C -0.072 4.072 20 C -0.087 4.087 21 C -0.123 4.123 22 C 0.044 3.956 23 O -0.383 6.383 24 C 0.046 3.954 25 C -0.138 4.138 26 C -0.072 4.072 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.278 0.722 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.118 0.882 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.933 6.639 4.685 8.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.165 4.165 4 C -0.014 4.014 5 N -0.190 5.190 6 C -0.479 4.479 7 H 0.117 0.883 8 C -0.131 4.131 9 N -0.482 5.482 10 Si 0.686 3.314 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.184 1.184 14 C 0.328 3.672 15 O -0.471 6.471 16 C -0.114 4.114 17 C -0.093 4.093 18 C -0.158 4.158 19 C -0.072 4.072 20 C -0.087 4.087 21 C -0.180 4.180 22 C -0.032 4.032 23 O -0.302 6.302 24 C -0.030 4.030 25 C -0.156 4.156 26 C -0.090 4.090 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.140 0.860 38 H 0.133 0.867 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.101 0.899 46 H 0.136 0.864 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.737 6.547 5.006 8.684 hybrid contribution 0.563 -0.730 0.133 0.931 sum -2.174 5.817 5.138 8.060 Atomic orbital electron populations 1.21745 0.96293 1.00873 1.01671 1.21465 0.95440 0.97440 1.01666 1.21876 0.96469 0.95977 1.02161 1.21617 0.93337 0.85191 1.01250 1.43385 1.58302 1.11531 1.05742 1.18766 1.15734 1.16220 0.97172 0.88306 1.25587 0.97179 0.95801 0.94573 1.69760 1.30635 1.42682 1.05173 0.86936 0.81704 0.81571 0.81158 1.19452 1.20706 1.18358 1.18681 0.77403 0.87097 0.84028 1.90624 1.54681 1.70398 1.31382 1.19995 1.01823 0.93911 0.95653 1.21148 0.97904 0.92993 0.97262 1.20611 1.02013 0.94564 0.98574 1.19749 0.98786 0.93434 0.95280 1.22605 0.96756 0.92970 0.96397 1.21548 0.95358 0.98867 1.02246 1.24151 0.94710 0.92493 0.91896 1.89631 1.74137 1.43675 1.22734 1.24087 0.91918 0.93938 0.93103 1.21068 1.02293 0.94396 0.97881 1.23333 0.92641 0.94688 0.98309 0.93285 0.93012 0.92821 0.92118 0.92334 0.92429 0.91474 0.91043 0.92116 0.91184 0.85956 0.86715 0.91778 0.91812 0.91539 0.89572 0.89029 0.89272 0.89894 0.86391 0.79504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.54 16 2 C -0.12 -1.83 5.93 -26.73 -0.16 -1.98 16 3 C -0.13 -2.31 5.49 -26.73 -0.15 -2.45 16 4 C 0.11 2.30 4.34 -4.04 -0.02 2.29 16 5 N -0.47 -10.88 1.59 -115.93 -0.18 -11.07 16 6 C -0.35 -8.49 5.96 -15.00 -0.09 -8.58 16 7 H 0.10 2.54 7.11 -52.48 -0.37 2.17 16 8 C 0.08 1.93 4.58 -17.45 -0.08 1.85 16 9 N -0.85 -21.63 13.95 55.50 0.77 -20.86 16 10 Si 0.86 19.71 26.92 -169.99 -4.58 15.14 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.26 -6.27 7.11 56.52 0.40 -5.86 16 14 C 0.54 12.66 7.39 -12.38 -0.09 12.57 16 15 O -0.59 -14.80 16.30 5.28 0.09 -14.72 16 16 C -0.11 -2.34 5.73 -104.97 -0.60 -2.94 16 17 C -0.07 -1.35 9.59 -39.17 -0.38 -1.72 16 18 C -0.14 -2.12 9.36 -39.64 -0.37 -2.50 16 19 C -0.07 -1.07 4.85 -104.52 -0.51 -1.58 16 20 C -0.09 -1.06 1.12 -154.58 -0.17 -1.23 16 21 C -0.12 -1.32 9.11 37.16 0.34 -0.98 16 22 C 0.04 0.53 7.40 37.61 0.28 0.81 16 23 O -0.38 -5.12 12.37 -35.23 -0.44 -5.56 16 24 C 0.05 0.53 7.96 37.61 0.30 0.83 16 25 C -0.14 -2.33 9.01 -39.64 -0.36 -2.68 16 26 C -0.07 -1.46 8.20 -39.17 -0.32 -1.78 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.52 6.84 -51.92 -0.36 1.16 16 35 H 0.06 1.30 7.48 -51.93 -0.39 0.91 16 36 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 37 H 0.12 2.16 7.88 -52.48 -0.41 1.75 16 38 H 0.11 1.43 8.00 -52.49 -0.42 1.01 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.63 8.09 -51.93 -0.42 0.20 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 1.05 7.48 -51.93 -0.39 0.66 16 43 H 0.09 0.97 8.10 -51.93 -0.42 0.54 16 44 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 45 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 46 H 0.12 1.77 7.13 -52.48 -0.37 1.40 16 47 H 0.19 4.19 4.10 -52.49 -0.22 3.97 16 LS Contribution 378.37 15.07 5.70 5.70 Total: -1.00 -27.60 378.37 -8.19 -35.79 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.55 Total: 7.18 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -2.01 Total: -11.61 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.59 Total: -31.93 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.35 Total: -20.27 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.58 Total: 15.14 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -27.60 -8.19 -35.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196218881.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.590 kcal (2) G-P(sol) polarization free energy of solvation -27.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds