Wall clock time and date at job start Tue Mar 31 2020 12:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46778 * 2 1 4 4 C 1.53001 * 109.47256 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47352 * 179.97438 * 4 3 2 6 6 C 1.36870 * 120.00511 * 263.80288 * 5 4 3 7 7 H 1.08003 * 119.99985 * 116.52178 * 6 5 4 8 8 C 1.39049 * 120.00098 * 296.53033 * 6 5 4 9 9 N 1.31363 * 119.99993 * 159.32571 * 8 6 5 10 10 Si 1.86804 * 120.00001 * 339.32100 * 8 6 5 11 11 H 1.48494 * 109.46944 * 86.12699 * 10 8 6 12 12 H 1.48496 * 109.47003 * 206.12631 * 10 8 6 13 13 H 1.48497 * 109.47066 * 326.12706 * 10 8 6 14 14 C 1.34780 * 119.99745 * 83.80940 * 5 4 3 15 15 O 1.21592 * 120.00150 * 11.20507 * 14 5 4 16 16 C 1.47727 * 120.00037 * 191.20842 * 14 5 4 17 17 C 1.39642 * 120.15410 * 153.26514 * 16 14 5 18 18 C 1.37932 * 119.85155 * 180.02562 * 17 16 14 19 19 C 1.38381 * 120.14944 * 0.02562 * 18 17 16 20 20 C 1.50698 * 119.84741 * 179.97438 * 19 18 17 21 21 C 1.52995 * 113.00073 * 281.15792 * 20 19 18 22 22 C 1.54033 * 113.81609 * 149.16954 * 20 19 18 23 23 O 1.44179 * 85.51837 * 223.19931 * 22 20 19 24 24 C 1.44167 * 93.34057 * 24.19344 * 23 22 20 25 25 C 1.38376 * 120.30211 * 0.24953 * 19 18 17 26 26 C 1.37935 * 120.15446 * 359.49198 * 25 19 18 27 27 H 1.09005 * 109.47023 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47336 * 299.99616 * 1 2 3 29 29 H 1.08995 * 109.47463 * 60.00309 * 1 2 3 30 30 H 1.08997 * 109.47336 * 240.00384 * 2 1 3 31 31 H 1.08995 * 109.47463 * 119.99691 * 2 1 3 32 32 H 1.08997 * 109.47351 * 59.99869 * 3 2 1 33 33 H 1.09003 * 109.47209 * 300.00028 * 3 2 1 34 34 H 1.09011 * 109.46950 * 59.99762 * 4 3 2 35 35 H 1.08997 * 109.47044 * 300.00627 * 4 3 2 36 36 H 0.96998 * 120.00296 * 179.97438 * 9 8 6 37 37 H 1.08007 * 120.07461 * 0.04412 * 17 16 14 38 38 H 1.07999 * 119.92823 * 179.97438 * 18 17 16 39 39 H 1.09005 * 109.47125 * 60.00211 * 21 20 19 40 40 H 1.09001 * 109.47135 * 179.97438 * 21 20 19 41 41 H 1.08993 * 109.47194 * 299.99973 * 21 20 19 42 42 H 1.09002 * 113.86359 * 337.34440 * 22 20 19 43 43 H 1.08998 * 113.86405 * 109.04596 * 22 20 19 44 44 H 1.09005 * 113.86601 * 221.65846 * 24 23 22 45 45 H 1.09003 * 113.98217 * 89.96707 * 24 23 22 46 46 H 1.08005 * 119.92341 * 179.74722 * 25 19 18 47 47 H 1.08001 * 120.08128 * 180.25284 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 7 4.0581 2.8238 0.0000 6 6 4.4074 3.4258 -1.1785 7 1 3.8600 4.2892 -1.5269 8 6 5.4669 2.9257 -1.9275 9 7 5.5592 3.2105 -3.2065 10 14 6.7590 1.8489 -1.1147 11 1 6.3027 0.4358 -1.1239 12 1 8.0377 1.9611 -1.8613 13 1 6.9636 2.2939 0.2872 14 6 4.1636 3.5018 1.1601 15 8 4.0520 2.9153 2.2194 16 6 4.4146 4.9575 1.1447 17 6 3.9901 5.7538 2.2105 18 6 4.2272 7.1124 2.1894 19 6 4.8837 7.6868 1.1151 20 6 5.1387 9.1719 1.0989 21 6 3.9057 9.9859 0.7018 22 6 6.4216 9.5746 0.3474 23 8 6.6505 10.4739 1.4509 24 6 5.8491 9.6949 2.3617 25 6 5.3020 6.9045 0.0531 26 6 5.0761 5.5438 0.0636 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6765 1.9564 -0.8900 34 1 3.9337 0.9286 -0.8892 35 1 3.9329 0.9289 0.8908 36 1 6.2984 2.8620 -3.7289 37 1 3.4775 5.3068 3.0495 38 1 3.8991 7.7295 3.0127 39 1 3.1008 9.7960 1.4119 40 1 4.1532 11.0474 0.7091 41 1 3.5844 9.6943 -0.2981 42 1 7.1575 8.7741 0.2710 43 1 6.2372 10.0785 -0.6013 44 1 5.2106 10.2944 3.0106 45 1 6.4084 8.9307 2.9015 46 1 5.8103 7.3598 -0.7841 47 1 5.4068 4.9338 -0.7640 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196218881.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:29 Heat of formation + Delta-G solvation = -39.581728 kcal Electronic energy + Delta-G solvation = -27036.610449 eV Core-core repulsion = 23377.974336 eV Total energy + Delta-G solvation = -3658.636113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.97738 -41.06847 -39.02128 -37.27863 -35.79534 -34.03869 -33.90014 -31.88293 -30.97622 -29.61337 -27.58486 -27.22988 -26.84395 -25.24827 -23.60899 -23.13667 -22.05868 -21.23750 -19.96507 -19.51905 -17.90332 -17.76680 -17.27040 -16.91580 -16.67085 -16.44811 -16.21491 -15.97255 -15.29672 -15.15075 -14.94037 -14.62568 -14.57028 -14.35953 -14.11863 -13.98372 -13.81863 -13.65249 -13.36315 -13.19675 -13.06317 -12.91835 -12.89021 -12.61666 -12.26099 -12.17034 -12.08122 -12.01658 -11.84222 -11.46488 -11.44990 -11.40719 -11.09705 -10.66329 -10.54258 -9.79911 -9.58467 -9.34284 -8.54187 -6.32619 0.07042 0.59140 1.17971 1.27661 1.39680 1.95561 2.17674 2.56805 2.70640 2.80605 3.07017 3.15872 3.66017 3.94943 4.02584 4.04259 4.12476 4.18066 4.22985 4.24558 4.27207 4.42629 4.43860 4.60100 4.60927 4.63106 4.72337 4.77825 4.83409 4.91272 4.92941 4.94192 4.95522 5.06319 5.07320 5.10863 5.17955 5.23409 5.27213 5.31604 5.36155 5.43794 5.51206 5.58449 5.67829 5.76528 6.08410 6.16652 6.22445 6.92086 7.30643 7.71803 8.54774 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014478 B = 0.003966 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.466241 B = 7058.310394 C = 8065.456640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.115 4.115 4 C 0.105 3.895 5 N -0.477 5.477 6 C -0.336 4.336 7 H 0.078 0.922 8 C 0.058 3.942 9 N -0.878 5.878 10 Si 0.898 3.102 11 H -0.261 1.261 12 H -0.270 1.270 13 H -0.282 1.282 14 C 0.528 3.472 15 O -0.612 6.612 16 C -0.145 4.145 17 C -0.079 4.079 18 C -0.126 4.126 19 C -0.055 4.055 20 C -0.085 4.085 21 C -0.121 4.121 22 C 0.040 3.960 23 O -0.398 6.398 24 C 0.048 3.952 25 C -0.139 4.139 26 C -0.089 4.089 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.283 0.717 37 H 0.124 0.876 38 H 0.153 0.847 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.081 0.919 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.082 0.918 46 H 0.134 0.866 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.481 8.069 5.498 10.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.154 4.154 4 C -0.018 4.018 5 N -0.197 5.197 6 C -0.464 4.464 7 H 0.096 0.904 8 C -0.150 4.150 9 N -0.512 5.512 10 Si 0.723 3.277 11 H -0.186 1.186 12 H -0.195 1.195 13 H -0.208 1.208 14 C 0.320 3.680 15 O -0.499 6.499 16 C -0.148 4.148 17 C -0.098 4.098 18 C -0.144 4.144 19 C -0.055 4.055 20 C -0.085 4.085 21 C -0.178 4.178 22 C -0.036 4.036 23 O -0.318 6.318 24 C -0.028 4.028 25 C -0.157 4.157 26 C -0.107 4.107 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.142 0.858 38 H 0.171 0.829 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.125 0.875 44 H 0.132 0.868 45 H 0.100 0.900 46 H 0.152 0.848 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.286 7.966 5.799 10.386 hybrid contribution 0.741 -1.055 -0.064 1.291 sum -2.545 6.911 5.735 9.334 Atomic orbital electron populations 1.21714 0.94331 1.02388 1.01752 1.21457 0.97135 0.94830 1.02232 1.21764 0.94279 0.98313 1.01008 1.21724 0.95300 0.84099 1.00664 1.43539 1.58463 1.12258 1.05467 1.18492 1.15325 1.15581 0.96992 0.90413 1.25825 0.97858 0.96606 0.94694 1.69777 1.31515 1.44076 1.05832 0.86389 0.81047 0.81030 0.79242 1.18618 1.19510 1.20774 1.19183 0.76757 0.88412 0.83644 1.90578 1.56055 1.71259 1.31981 1.19982 1.04455 0.92816 0.97567 1.21269 0.97954 0.94182 0.96394 1.20970 1.00454 0.93491 0.99442 1.20057 0.96483 0.95045 0.93929 1.22694 0.97618 0.90775 0.97411 1.21560 0.94685 0.99264 1.02275 1.24256 0.94427 0.92481 0.92463 1.89629 1.74575 1.44162 1.23407 1.24233 0.91668 0.94089 0.92852 1.21202 1.02183 0.93123 0.99172 1.22976 0.94042 0.96075 0.97635 0.91044 0.92981 0.92746 0.91496 0.91832 0.93617 0.92433 0.91395 0.92704 0.90692 0.85815 0.82929 0.90820 0.90519 0.91928 0.90068 0.87516 0.86785 0.90023 0.84824 0.82238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.91 71.98 0.71 -2.76 16 2 C -0.12 -3.45 5.93 30.59 0.18 -3.27 16 3 C -0.12 -4.28 5.49 30.59 0.17 -4.11 16 4 C 0.10 4.54 4.34 86.38 0.38 4.92 16 5 N -0.48 -22.97 1.59 -638.94 -1.02 -23.98 16 6 C -0.34 -16.86 5.96 84.10 0.50 -16.36 16 7 H 0.08 4.21 7.11 -2.91 -0.02 4.18 16 8 C 0.06 2.90 4.58 84.96 0.39 3.29 16 9 N -0.88 -45.48 13.95 21.68 0.30 -45.18 16 10 Si 0.90 41.25 26.92 68.60 1.85 43.10 16 11 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 H -0.28 -13.96 7.11 99.48 0.71 -13.26 16 14 C 0.53 25.82 7.39 86.75 0.64 26.46 16 15 O -0.61 -31.91 16.30 -4.01 -0.07 -31.97 16 16 C -0.15 -6.28 5.73 -20.09 -0.12 -6.40 16 17 C -0.08 -2.83 9.59 22.54 0.22 -2.61 16 18 C -0.13 -3.52 9.36 22.23 0.21 -3.31 16 19 C -0.05 -1.50 4.85 -19.80 -0.10 -1.60 16 20 C -0.08 -1.79 1.12 -52.23 -0.06 -1.85 16 21 C -0.12 -2.15 9.11 71.98 0.66 -1.50 16 22 C 0.04 0.87 7.40 72.27 0.53 1.40 16 23 O -0.40 -9.50 12.37 -148.98 -1.84 -11.35 16 24 C 0.05 0.94 7.96 72.27 0.58 1.51 16 25 C -0.14 -4.58 9.01 22.23 0.20 -4.38 16 26 C -0.09 -3.70 8.20 22.54 0.18 -3.52 16 27 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.07 2.95 6.84 -2.38 -0.02 2.93 16 35 H 0.05 2.42 7.48 -2.39 -0.02 2.40 16 36 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 37 H 0.12 4.33 7.88 -2.91 -0.02 4.31 16 38 H 0.15 3.13 8.00 -2.91 -0.02 3.11 16 39 H 0.07 1.18 8.14 -2.38 -0.02 1.17 16 40 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 41 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.08 1.83 7.48 -2.39 -0.02 1.81 16 43 H 0.11 1.97 8.10 -2.39 -0.02 1.95 16 44 H 0.11 1.68 8.10 -2.38 -0.02 1.66 16 45 H 0.08 1.62 8.09 -2.39 -0.02 1.60 16 46 H 0.13 3.90 7.13 -2.91 -0.02 3.88 16 47 H 0.16 7.50 4.10 -2.91 -0.01 7.48 16 Total: -1.00 -60.92 378.37 5.45 -55.48 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.95 Total: 27.99 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 5.27 Total: -14.08 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: -0.71 Total: -69.16 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -1.91 Total: -43.32 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.85 Total: 43.10 kcal Total: -60.92 5.45 -55.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196218881.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.896 kcal (2) G-P(sol) polarization free energy of solvation -60.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds