Wall clock time and date at job start Tue Mar 31 2020 12:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47367 * 2 1 4 4 C 1.53005 * 109.47149 * 180.02562 * 3 2 1 5 5 N 1.46894 * 109.47019 * 179.31409 * 4 3 2 6 6 C 1.46904 * 110.99943 * 287.83703 * 5 4 3 7 7 C 1.50702 * 109.47116 * 298.99942 * 6 5 4 8 8 H 1.08000 * 120.00203 * 4.77180 * 7 6 5 9 9 C 1.37874 * 120.00092 * 184.77998 * 7 6 5 10 10 N 1.31519 * 120.00011 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00294 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47014 * 59.99510 * 11 9 7 13 13 H 1.48493 * 109.47117 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.46787 * 300.00071 * 11 9 7 15 15 C 1.46902 * 111.00193 * 163.88702 * 5 4 3 16 16 C 1.50694 * 109.47362 * 189.99705 * 15 5 4 17 17 C 1.34012 * 124.92380 * 90.62212 * 16 15 5 18 18 C 1.46790 * 106.18813 * 180.02562 * 17 16 15 19 19 C 1.39436 * 134.27387 * 179.31608 * 18 17 16 20 20 C 1.38168 * 119.55375 * 180.02562 * 19 18 17 21 21 O 1.35975 * 119.92422 * 180.02562 * 20 19 18 22 22 C 1.42903 * 117.00448 * 179.97438 * 21 20 19 23 23 C 1.39191 * 120.15629 * 359.97438 * 20 19 18 24 24 C 1.37773 * 120.63807 * 0.02562 * 23 20 19 25 25 C 1.38926 * 120.03737 * 0.23099 * 24 23 20 26 26 O 1.34435 * 124.92489 * 269.97210 * 16 15 5 27 27 H 1.09002 * 109.47208 * 299.99860 * 1 2 3 28 28 H 1.09004 * 109.46986 * 60.00020 * 1 2 3 29 29 H 1.08999 * 109.47614 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46943 * 239.99665 * 2 1 3 31 31 H 1.08996 * 109.47088 * 120.00326 * 2 1 3 32 32 H 1.08997 * 109.46875 * 60.00395 * 3 2 1 33 33 H 1.09004 * 109.47051 * 299.99940 * 3 2 1 34 34 H 1.09001 * 109.47239 * 59.30670 * 4 3 2 35 35 H 1.09003 * 109.46536 * 299.30961 * 4 3 2 36 36 H 1.08998 * 109.46823 * 58.99338 * 6 5 4 37 37 H 1.08994 * 109.47301 * 178.99362 * 6 5 4 38 38 H 0.97002 * 120.00019 * 179.97438 * 10 9 7 39 39 H 1.08999 * 109.47140 * 69.99589 * 15 5 4 40 40 H 1.08998 * 109.46833 * 309.99820 * 15 5 4 41 41 H 1.07993 * 126.89800 * 359.34192 * 17 16 15 42 42 H 1.07997 * 120.22506 * 0.02562 * 19 18 17 43 43 H 1.08998 * 109.46755 * 300.00512 * 22 21 20 44 44 H 1.09004 * 109.46560 * 59.99749 * 22 21 20 45 45 H 1.08997 * 109.47214 * 180.02562 * 22 21 20 46 46 H 1.08003 * 119.68035 * 180.02562 * 23 20 19 47 47 H 1.08006 * 119.98284 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0597 2.8272 -0.0172 6 6 3.8386 3.4481 -1.3301 7 6 4.5924 2.6778 -2.3835 8 1 5.1140 1.7699 -2.1188 9 6 4.6162 3.1321 -3.6850 10 7 3.9807 4.2375 -4.0074 11 14 5.5511 2.1777 -4.9905 12 1 4.9895 0.8073 -5.0991 13 1 5.4227 2.8709 -6.2975 14 1 6.9850 2.0965 -4.6126 15 6 5.4776 2.8889 0.3621 16 6 5.8792 4.3259 0.5729 17 6 5.8146 4.9769 1.7425 18 6 6.3000 6.3374 1.4810 19 6 6.4648 7.4793 2.2639 20 6 6.9613 8.6337 1.6894 21 8 7.1256 9.7515 2.4460 22 6 7.6439 10.9096 1.7886 23 6 7.2948 8.6547 0.3382 24 6 7.1349 7.5305 -0.4420 25 6 6.6320 6.3621 0.1166 26 8 6.3658 5.1371 -0.3823 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9179 -0.8846 35 1 3.9337 0.9391 0.8953 36 1 2.7739 3.4356 -1.5632 37 1 4.1939 4.4783 -1.3093 38 1 3.9977 4.5573 -4.9230 39 1 6.0853 2.4545 -0.4317 40 1 5.6314 2.3295 1.2849 41 1 5.4644 4.5833 2.6852 42 1 6.2061 7.4617 3.3123 43 1 8.6291 10.6850 1.3801 44 1 6.9727 11.1992 0.9799 45 1 7.7255 11.7277 2.5042 46 1 7.6827 9.5610 -0.1029 47 1 7.3966 7.5588 -1.4895 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209771177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:09 Heat of formation + Delta-G solvation = -15.807865 kcal Electronic energy + Delta-G solvation = -26446.581136 eV Core-core repulsion = 22788.975935 eV Total energy + Delta-G solvation = -3657.605201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.96564 -39.52192 -37.36989 -36.19798 -34.30326 -32.70883 -32.19311 -30.22235 -29.69459 -28.20520 -27.15614 -26.80700 -24.82555 -23.34349 -22.46494 -21.48572 -21.06039 -20.30507 -19.58144 -17.90588 -17.09776 -16.55458 -15.93889 -15.89428 -15.59523 -15.24075 -14.90799 -14.69361 -14.34550 -13.93938 -13.84783 -13.41687 -13.30503 -12.96718 -12.64827 -12.38455 -12.35298 -12.28537 -12.16272 -12.08768 -11.75758 -11.25842 -11.11569 -10.94127 -10.78480 -10.74316 -10.57787 -10.53563 -10.50900 -10.20720 -10.01940 -9.89962 -9.74336 -9.59666 -8.40906 -7.87312 -7.71369 -7.27319 -6.01854 -4.10272 1.15004 1.66004 2.78630 3.16806 3.27979 3.33217 3.34175 3.35052 3.92532 4.40542 4.73339 4.86757 4.97453 4.99606 5.05483 5.19131 5.27339 5.29428 5.34719 5.35129 5.47446 5.51973 5.57048 5.64533 5.77317 5.84056 5.87735 6.08612 6.10108 6.13084 6.18213 6.21929 6.31259 6.36105 6.39032 6.47184 6.51808 6.58396 6.65869 6.85995 6.87640 6.91409 7.21785 7.40056 7.53301 7.72977 7.89494 7.96405 8.17416 8.26276 8.97112 9.55610 11.03919 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011900 B = 0.003631 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.457536 B = 7708.619197 C = 9389.444517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.110 4.110 4 C 0.060 3.940 5 N -0.539 5.539 6 C 0.184 3.816 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.070 3.930 10 N -0.887 5.887 11 Si 0.885 3.115 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.124 3.876 16 C 0.095 3.905 17 C -0.227 4.227 18 C -0.085 4.085 19 C -0.116 4.116 20 C 0.102 3.898 21 O -0.320 6.320 22 C 0.029 3.971 23 C -0.186 4.186 24 C -0.062 4.062 25 C 0.023 3.977 26 O -0.170 6.170 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.032 0.968 37 H 0.037 0.963 38 H 0.262 0.738 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.154 0.846 42 H 0.131 0.869 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.096 0.904 46 H 0.135 0.865 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.874 4.427 11.182 12.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.148 4.148 4 C -0.068 4.068 5 N -0.263 5.263 6 C 0.059 3.941 7 C -0.587 4.587 8 H 0.074 0.926 9 C -0.133 4.133 10 N -0.525 5.525 11 Si 0.713 3.287 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.203 1.203 15 C -0.003 4.003 16 C 0.046 3.954 17 C -0.247 4.247 18 C -0.087 4.087 19 C -0.135 4.135 20 C 0.057 3.943 21 O -0.234 6.234 22 C -0.067 4.067 23 C -0.205 4.205 24 C -0.080 4.080 25 C -0.025 4.025 26 O -0.070 6.070 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.172 0.828 42 H 0.148 0.852 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.115 0.885 46 H 0.152 0.848 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.561 4.781 11.284 12.762 hybrid contribution 1.003 -0.645 -1.698 2.074 sum 4.564 4.136 9.586 11.395 Atomic orbital electron populations 1.21751 0.96393 1.00797 1.01754 1.21477 0.95366 0.97712 1.01417 1.21505 0.95358 0.95404 1.02492 1.21960 0.95078 0.89792 0.99937 1.62624 1.13234 1.17083 1.33321 1.19842 0.97111 0.95157 0.82040 1.21575 1.33224 1.09677 0.94271 0.92631 1.24891 0.95204 0.94757 0.98446 1.69937 1.42186 1.21335 1.19017 0.86774 0.80586 0.80171 0.81201 1.20271 1.21215 1.20276 1.20573 0.92272 0.86213 1.01289 1.22410 0.94133 0.93357 0.85502 1.22012 1.11286 0.91889 0.99483 1.19660 1.01394 0.94388 0.93210 1.19484 1.04545 0.89377 1.00072 1.18599 0.98956 0.86906 0.89821 1.86045 1.80797 1.18900 1.37647 1.23006 0.98343 0.86382 0.98943 1.20862 1.07642 0.98989 0.92993 1.19693 0.99550 0.88539 1.00264 1.19557 1.03887 0.86721 0.92328 1.84220 1.67044 1.18519 1.37250 0.93039 0.92711 0.93418 0.92165 0.92713 0.92314 0.91247 0.93104 0.93142 0.95009 0.94469 0.92824 0.91592 0.89389 0.82808 0.85151 0.92821 0.92711 0.88546 0.84777 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 37.16 0.37 -1.49 16 2 C -0.12 -1.70 5.93 -26.74 -0.16 -1.85 16 3 C -0.11 -1.84 5.28 -26.73 -0.14 -1.98 16 4 C 0.06 1.09 4.80 -3.82 -0.02 1.07 16 5 N -0.54 -11.11 4.66 -237.52 -1.11 -12.21 16 6 C 0.18 4.65 4.80 -4.97 -0.02 4.63 16 7 C -0.55 -14.68 7.34 -34.44 -0.25 -14.93 16 8 H 0.06 1.45 5.95 -52.49 -0.31 1.14 16 9 C 0.07 1.95 5.46 -17.82 -0.10 1.85 16 10 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 11 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 C 0.12 2.34 5.28 -4.98 -0.03 2.32 16 16 C 0.10 1.87 5.81 -35.80 -0.21 1.66 16 17 C -0.23 -3.96 11.01 -37.61 -0.41 -4.37 16 18 C -0.09 -1.52 6.39 -105.16 -0.67 -2.20 16 19 C -0.12 -1.82 10.03 -39.16 -0.39 -2.21 16 20 C 0.10 1.49 6.68 -39.25 -0.26 1.23 16 21 O -0.32 -4.12 10.49 -19.66 -0.21 -4.33 16 22 C 0.03 0.24 9.81 101.05 0.99 1.23 16 23 C -0.19 -2.60 9.01 -39.40 -0.36 -2.95 16 24 C -0.06 -1.02 10.05 -39.50 -0.40 -1.41 16 25 C 0.02 0.44 7.41 -38.50 -0.29 0.16 16 26 O -0.17 -3.74 9.86 3.63 0.04 -3.70 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.35 6.73 -51.93 -0.35 1.00 16 34 H 0.05 1.02 6.15 -51.93 -0.32 0.70 16 35 H 0.05 0.78 7.81 -51.93 -0.41 0.38 16 36 H 0.03 0.87 6.66 -51.93 -0.35 0.52 16 37 H 0.04 1.06 6.63 -51.93 -0.34 0.71 16 38 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 39 H 0.07 1.35 6.59 -51.93 -0.34 1.01 16 40 H 0.09 1.34 7.86 -51.93 -0.41 0.93 16 41 H 0.15 2.25 8.06 -52.49 -0.42 1.83 16 42 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 43 H 0.05 0.40 7.65 -51.93 -0.40 0.00 16 44 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.13 1.43 6.26 -52.48 -0.33 1.10 16 47 H 0.13 2.00 8.06 -52.48 -0.42 1.57 16 LS Contribution 379.58 15.07 5.72 5.72 Total: -1.00 -30.84 379.58 -9.50 -40.34 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.31 Total: 2.42 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -2.35 Total: -19.25 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: -0.37 Total: -37.49 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.17 Total: -8.03 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.84 -9.50 -40.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209771177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.535 kcal (2) G-P(sol) polarization free energy of solvation -30.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds