Wall clock time and date at job start Tue Mar 31 2020 12:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47367 * 2 1 4 4 C 1.53005 * 109.47149 * 180.02562 * 3 2 1 5 5 N 1.46894 * 109.47019 * 179.31409 * 4 3 2 6 6 C 1.46904 * 110.99943 * 287.83703 * 5 4 3 7 7 C 1.50702 * 109.47116 * 298.99942 * 6 5 4 8 8 H 1.08000 * 120.00203 * 4.77180 * 7 6 5 9 9 C 1.37874 * 120.00092 * 184.77998 * 7 6 5 10 10 N 1.31519 * 120.00011 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00294 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47014 * 59.99510 * 11 9 7 13 13 H 1.48493 * 109.47117 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.46787 * 300.00071 * 11 9 7 15 15 C 1.46902 * 111.00193 * 163.88702 * 5 4 3 16 16 C 1.50694 * 109.47362 * 189.99705 * 15 5 4 17 17 C 1.34012 * 124.92380 * 90.62212 * 16 15 5 18 18 C 1.46790 * 106.18813 * 180.02562 * 17 16 15 19 19 C 1.39436 * 134.27387 * 179.31608 * 18 17 16 20 20 C 1.38168 * 119.55375 * 180.02562 * 19 18 17 21 21 O 1.35975 * 119.92422 * 180.02562 * 20 19 18 22 22 C 1.42903 * 117.00448 * 179.97438 * 21 20 19 23 23 C 1.39191 * 120.15629 * 359.97438 * 20 19 18 24 24 C 1.37773 * 120.63807 * 0.02562 * 23 20 19 25 25 C 1.38926 * 120.03737 * 0.23099 * 24 23 20 26 26 O 1.34435 * 124.92489 * 269.97210 * 16 15 5 27 27 H 1.09002 * 109.47208 * 299.99860 * 1 2 3 28 28 H 1.09004 * 109.46986 * 60.00020 * 1 2 3 29 29 H 1.08999 * 109.47614 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46943 * 239.99665 * 2 1 3 31 31 H 1.08996 * 109.47088 * 120.00326 * 2 1 3 32 32 H 1.08997 * 109.46875 * 60.00395 * 3 2 1 33 33 H 1.09004 * 109.47051 * 299.99940 * 3 2 1 34 34 H 1.09001 * 109.47239 * 59.30670 * 4 3 2 35 35 H 1.09003 * 109.46536 * 299.30961 * 4 3 2 36 36 H 1.08998 * 109.46823 * 58.99338 * 6 5 4 37 37 H 1.08994 * 109.47301 * 178.99362 * 6 5 4 38 38 H 0.97002 * 120.00019 * 179.97438 * 10 9 7 39 39 H 1.08999 * 109.47140 * 69.99589 * 15 5 4 40 40 H 1.08998 * 109.46833 * 309.99820 * 15 5 4 41 41 H 1.07993 * 126.89800 * 359.34192 * 17 16 15 42 42 H 1.07997 * 120.22506 * 0.02562 * 19 18 17 43 43 H 1.08998 * 109.46755 * 300.00512 * 22 21 20 44 44 H 1.09004 * 109.46560 * 59.99749 * 22 21 20 45 45 H 1.08997 * 109.47214 * 180.02562 * 22 21 20 46 46 H 1.08003 * 119.68035 * 180.02562 * 23 20 19 47 47 H 1.08006 * 119.98284 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0597 2.8272 -0.0172 6 6 3.8386 3.4481 -1.3301 7 6 4.5924 2.6778 -2.3835 8 1 5.1140 1.7699 -2.1188 9 6 4.6162 3.1321 -3.6850 10 7 3.9807 4.2375 -4.0074 11 14 5.5511 2.1777 -4.9905 12 1 4.9895 0.8073 -5.0991 13 1 5.4227 2.8709 -6.2975 14 1 6.9850 2.0965 -4.6126 15 6 5.4776 2.8889 0.3621 16 6 5.8792 4.3259 0.5729 17 6 5.8146 4.9769 1.7425 18 6 6.3000 6.3374 1.4810 19 6 6.4648 7.4793 2.2639 20 6 6.9613 8.6337 1.6894 21 8 7.1256 9.7515 2.4460 22 6 7.6439 10.9096 1.7886 23 6 7.2948 8.6547 0.3382 24 6 7.1349 7.5305 -0.4420 25 6 6.6320 6.3621 0.1166 26 8 6.3658 5.1371 -0.3823 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9179 -0.8846 35 1 3.9337 0.9391 0.8953 36 1 2.7739 3.4356 -1.5632 37 1 4.1939 4.4783 -1.3093 38 1 3.9977 4.5573 -4.9230 39 1 6.0853 2.4545 -0.4317 40 1 5.6314 2.3295 1.2849 41 1 5.4644 4.5833 2.6852 42 1 6.2061 7.4617 3.3123 43 1 8.6291 10.6850 1.3801 44 1 6.9727 11.1992 0.9799 45 1 7.7255 11.7277 2.5042 46 1 7.6827 9.5610 -0.1029 47 1 7.3966 7.5588 -1.4895 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209771177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:08 Heat of formation + Delta-G solvation = -33.871066 kcal Electronic energy + Delta-G solvation = -26447.364415 eV Core-core repulsion = 22788.975935 eV Total energy + Delta-G solvation = -3658.388480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.34523 -40.59807 -38.97330 -37.38870 -35.62914 -34.61156 -33.69931 -31.50597 -30.90039 -29.78321 -28.57700 -27.89491 -26.38083 -25.07244 -23.72866 -22.72214 -22.38181 -21.62344 -21.26325 -19.03106 -18.52539 -18.38068 -17.37074 -17.18378 -16.82501 -16.57254 -16.29199 -16.17174 -15.94437 -15.41478 -15.22035 -14.75315 -14.36234 -14.29754 -14.13185 -13.74639 -13.71578 -13.53944 -13.40639 -13.25323 -13.10569 -12.91879 -12.72619 -12.60403 -12.42030 -12.05105 -12.00592 -11.84865 -11.77929 -11.70112 -11.62619 -11.55276 -11.26442 -11.05785 -10.57160 -9.23464 -9.00832 -8.95146 -8.13722 -6.31289 -0.12141 0.39446 1.34091 1.35936 1.40854 1.42984 1.90261 2.33413 2.36603 2.67083 3.12773 3.36369 3.55311 3.72398 3.89794 4.05950 4.14171 4.22208 4.25378 4.34267 4.36890 4.42874 4.45072 4.49661 4.55427 4.58466 4.71472 4.77647 4.82626 4.90209 4.91636 5.02833 5.05704 5.10742 5.18137 5.18720 5.26273 5.27046 5.34885 5.39716 5.45376 5.51287 5.57853 5.58825 5.77611 6.01834 6.19341 6.29347 6.45146 6.48673 6.87062 7.38657 8.89677 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011900 B = 0.003631 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.457536 B = 7708.619197 C = 9389.444517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.104 4.104 4 C 0.060 3.940 5 N -0.538 5.538 6 C 0.206 3.794 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.014 3.986 10 N -0.926 5.926 11 Si 0.950 3.050 12 H -0.266 1.266 13 H -0.284 1.284 14 H -0.273 1.273 15 C 0.128 3.872 16 C 0.058 3.942 17 C -0.208 4.208 18 C -0.101 4.101 19 C -0.122 4.122 20 C 0.107 3.893 21 O -0.328 6.328 22 C 0.015 3.985 23 C -0.170 4.170 24 C -0.080 4.080 25 C -0.016 4.016 26 O -0.211 6.211 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.030 0.970 34 H 0.028 0.972 35 H 0.088 0.912 36 H 0.003 0.997 37 H -0.001 1.001 38 H 0.262 0.738 39 H 0.042 0.958 40 H 0.131 0.869 41 H 0.184 0.816 42 H 0.150 0.850 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.123 0.877 46 H 0.171 0.829 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.694 4.443 13.131 14.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.142 4.142 4 C -0.067 4.067 5 N -0.261 5.261 6 C 0.079 3.921 7 C -0.587 4.587 8 H 0.078 0.922 9 C -0.185 4.185 10 N -0.565 5.565 11 Si 0.775 3.225 12 H -0.191 1.191 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.001 3.999 16 C 0.009 3.991 17 C -0.228 4.228 18 C -0.102 4.102 19 C -0.141 4.141 20 C 0.062 3.938 21 O -0.242 6.242 22 C -0.079 4.079 23 C -0.188 4.188 24 C -0.099 4.099 25 C -0.063 4.063 26 O -0.113 6.113 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.107 0.893 36 H 0.021 0.979 37 H 0.017 0.983 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.149 0.851 41 H 0.202 0.798 42 H 0.168 0.832 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.141 0.859 46 H 0.188 0.812 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.385 4.789 13.256 14.761 hybrid contribution 0.794 -0.450 -2.188 2.371 sum 5.178 4.339 11.068 12.967 Atomic orbital electron populations 1.21740 0.95212 1.02055 1.01535 1.21441 0.96406 0.95449 1.02110 1.21457 0.94530 0.97304 1.00930 1.22080 0.95866 0.88182 1.00612 1.62541 1.14945 1.18528 1.30099 1.19335 0.94746 0.93548 0.84426 1.21858 1.32553 1.09579 0.94724 0.92197 1.25741 0.96220 0.95684 1.00849 1.70082 1.43963 1.23103 1.19401 0.85738 0.79268 0.79135 0.78363 1.19057 1.20954 1.19805 1.20695 0.90272 0.86651 1.02311 1.22646 0.96413 0.93888 0.86111 1.22369 1.09208 0.91518 0.99692 1.19870 1.02140 0.95304 0.92912 1.19737 1.04380 0.89118 1.00880 1.18714 0.97679 0.87401 0.90046 1.86056 1.80738 1.19262 1.38141 1.23398 0.99009 0.85357 1.00129 1.21235 1.05686 0.99185 0.92678 1.20001 1.00183 0.88636 1.01053 1.20129 1.05683 0.86785 0.93655 1.84134 1.68233 1.19952 1.39015 0.92138 0.94126 0.91395 0.93084 0.90306 0.91555 0.95076 0.95370 0.89340 0.97918 0.98254 0.92925 0.93982 0.85084 0.79835 0.83227 0.91454 0.91848 0.85905 0.81151 0.84395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.91 71.98 0.71 -2.76 16 2 C -0.12 -3.08 5.93 30.59 0.18 -2.90 16 3 C -0.10 -3.51 5.28 30.59 0.16 -3.35 16 4 C 0.06 2.15 4.80 86.31 0.41 2.57 16 5 N -0.54 -22.69 4.66 -905.37 -4.22 -26.91 16 6 C 0.21 11.07 4.80 85.56 0.41 11.48 16 7 C -0.55 -30.59 7.34 25.60 0.19 -30.40 16 8 H 0.06 3.23 5.95 -2.91 -0.02 3.21 16 9 C 0.01 0.83 5.46 84.65 0.46 1.29 16 10 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 11 Si 0.95 44.83 29.54 68.60 2.03 46.85 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 14 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 15 C 0.13 4.88 5.28 85.55 0.45 5.33 16 16 C 0.06 2.34 5.81 24.72 0.14 2.48 16 17 C -0.21 -7.24 11.01 23.54 0.26 -6.98 16 18 C -0.10 -3.63 6.39 -20.22 -0.13 -3.76 16 19 C -0.12 -3.70 10.03 22.54 0.23 -3.48 16 20 C 0.11 2.93 6.68 22.48 0.15 3.08 16 21 O -0.33 -7.52 10.49 -93.27 -0.98 -8.50 16 22 C 0.02 0.20 9.81 113.37 1.11 1.32 16 23 C -0.17 -4.47 9.01 22.39 0.20 -4.27 16 24 C -0.08 -2.68 10.05 22.32 0.22 -2.46 16 25 C -0.02 -0.63 7.41 22.97 0.17 -0.46 16 26 O -0.21 -9.89 9.86 -9.92 -0.10 -9.99 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.03 1.27 6.73 -2.39 -0.02 1.25 16 34 H 0.03 1.14 6.15 -2.39 -0.01 1.13 16 35 H 0.09 2.52 7.81 -2.39 -0.02 2.50 16 36 H 0.00 0.16 6.66 -2.39 -0.02 0.15 16 37 H 0.00 -0.04 6.63 -2.39 -0.02 -0.06 16 38 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.04 1.79 6.59 -2.39 -0.02 1.77 16 40 H 0.13 3.75 7.86 -2.39 -0.02 3.73 16 41 H 0.18 5.01 8.06 -2.91 -0.02 4.98 16 42 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 43 H 0.07 0.75 7.65 -2.39 -0.02 0.73 16 44 H 0.06 0.77 7.65 -2.38 -0.02 0.75 16 45 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.17 3.11 6.26 -2.91 -0.02 3.10 16 47 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -71.66 379.58 3.32 -68.34 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.96 Total: 20.02 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 5.34 Total: -33.26 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -3.93 Total: -83.46 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -1.08 Total: -18.48 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -71.66 3.32 -68.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209771177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.471 kcal (2) G-P(sol) polarization free energy of solvation -71.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds