Wall clock time and date at job start Tue Mar 31 2020 12:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47234 * 2 1 4 4 C 1.52993 * 109.47443 * 179.97438 * 3 2 1 5 5 C 1.50692 * 109.47493 * 180.02562 * 4 3 2 6 6 O 1.21297 * 119.99711 * 359.97438 * 5 4 3 7 7 C 1.46857 * 120.00317 * 180.02562 * 5 4 3 8 8 C 1.40037 * 120.11315 * 359.72133 * 7 5 4 9 9 C 1.37125 * 119.88110 * 179.74040 * 8 7 5 10 10 C 1.39074 * 120.11466 * 0.53698 * 9 8 7 11 11 O 1.35662 * 119.88291 * 179.69607 * 10 9 8 12 12 C 1.42906 * 116.99849 * 185.69253 * 11 10 9 13 13 H 1.08997 * 110.88772 * 32.42304 * 12 11 10 14 14 C 1.55157 * 111.00201 * 156.30231 * 12 11 10 15 15 C 1.54330 * 102.94196 * 153.57381 * 14 12 11 16 16 N 1.47020 * 107.26959 * 337.81083 * 15 14 12 17 17 C 1.36940 * 125.65209 * 178.95863 * 16 15 14 18 18 H 1.07996 * 120.00314 * 179.97438 * 17 16 15 19 19 C 1.38818 * 119.99207 * 359.97438 * 17 16 15 20 20 N 1.31618 * 120.00430 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99406 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47540 * 60.00191 * 21 19 17 23 23 H 1.48503 * 109.46818 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47430 * 299.99713 * 21 19 17 25 25 C 1.47425 * 108.70563 * 358.93730 * 16 15 14 26 26 C 1.39076 * 120.23142 * 359.72013 * 10 9 8 27 27 C 1.37118 * 120.11768 * 0.02562 * 26 10 9 28 28 H 1.08997 * 109.46911 * 60.00605 * 1 2 3 29 29 H 1.08996 * 109.47534 * 300.00124 * 1 2 3 30 30 H 1.09002 * 109.46672 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47205 * 119.99960 * 2 1 3 32 32 H 1.08996 * 109.47534 * 239.99876 * 2 1 3 33 33 H 1.08996 * 109.46922 * 300.00022 * 3 2 1 34 34 H 1.09006 * 109.46991 * 59.99436 * 3 2 1 35 35 H 1.09006 * 109.47331 * 300.00165 * 4 3 2 36 36 H 1.09006 * 109.47258 * 59.99881 * 4 3 2 37 37 H 1.07996 * 120.05972 * 359.97438 * 8 7 5 38 38 H 1.07996 * 119.94060 * 180.25701 * 9 8 7 39 39 H 1.08997 * 110.72376 * 271.93757 * 14 12 11 40 40 H 1.09004 * 110.71898 * 35.03961 * 14 12 11 41 41 H 1.08999 * 109.87888 * 97.22408 * 15 14 12 42 42 H 1.08999 * 109.88379 * 218.39251 * 15 14 12 43 43 H 0.96996 * 120.00053 * 180.02562 * 20 19 17 44 44 H 1.08996 * 110.36818 * 265.28967 * 25 16 15 45 45 H 1.08998 * 110.36872 * 142.96709 * 25 16 15 46 46 H 1.08005 * 119.94363 * 179.97438 * 26 10 9 47 47 H 1.07997 * 120.05961 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0723 2.8633 0.0013 6 8 3.2840 3.7852 0.0008 7 6 5.5161 3.1317 0.0014 8 6 6.4282 2.0691 0.0068 9 6 7.7754 2.3252 0.0015 10 6 8.2363 3.6373 0.0021 11 8 9.5700 3.8852 0.0030 12 6 9.9762 5.2494 0.1298 13 1 9.2722 5.8089 0.7458 14 6 11.4159 5.3503 0.6996 15 6 11.9141 6.7007 0.1428 16 7 11.1014 7.0106 -1.0425 17 6 11.2142 8.1352 -1.8158 18 1 10.5675 8.2702 -2.6701 19 6 12.1599 9.1015 -1.5015 20 7 12.9485 8.9367 -0.4606 21 14 12.3133 10.6358 -2.5559 22 1 11.0261 11.3761 -2.5431 23 1 13.3885 11.5042 -2.0126 24 1 12.6471 10.2473 -3.9497 25 6 10.1452 5.9101 -1.2611 26 6 7.3346 4.6962 0.0021 27 6 5.9855 4.4511 0.0021 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.9330 0.9288 0.8909 36 1 3.9337 0.9286 -0.8891 37 1 6.0714 1.0499 0.0113 38 1 8.4796 1.5064 0.0015 39 1 11.3993 5.3651 1.7893 40 1 12.0331 4.5288 0.3357 41 1 11.7872 7.4807 0.8936 42 1 12.9643 6.6211 -0.1382 43 1 13.6090 9.6122 -0.2408 44 1 10.5493 5.1926 -1.9752 45 1 9.1908 6.3011 -1.6137 46 1 7.6977 5.7134 0.0029 47 1 5.2862 5.2741 0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226771844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:42 Heat of formation + Delta-G solvation = -39.866596 kcal Electronic energy + Delta-G solvation = -25460.823199 eV Core-core repulsion = 21802.174733 eV Total energy + Delta-G solvation = -3658.648465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.51894 -39.53334 -37.66367 -36.15311 -35.66401 -32.43489 -31.74882 -31.01723 -29.96779 -29.22222 -27.49588 -25.52103 -24.65977 -23.15596 -22.71277 -21.34164 -20.58456 -20.21157 -19.55391 -18.31742 -17.12867 -16.62539 -16.21266 -15.99810 -15.24624 -14.96095 -14.78678 -14.69450 -14.59778 -14.11190 -13.92870 -13.76958 -13.59284 -13.10282 -12.88403 -12.68034 -12.60407 -12.44818 -12.32182 -11.95890 -11.68584 -11.63986 -11.51456 -11.36549 -11.03266 -10.95947 -10.91983 -10.79291 -10.41581 -10.31702 -10.14559 -9.96247 -9.77584 -9.75686 -9.21096 -8.68548 -8.21910 -6.95629 -5.79742 -3.14818 0.64999 1.28253 2.34356 3.24402 3.37230 3.41657 3.42913 3.71822 3.82570 4.43751 4.52421 4.60184 4.63724 4.71932 4.77043 4.97639 5.03456 5.08249 5.13947 5.18584 5.23883 5.30512 5.35971 5.44950 5.46818 5.47687 5.52152 5.58303 5.60136 5.65295 5.79043 5.88612 5.91098 6.01495 6.04385 6.13401 6.21161 6.27703 6.31998 6.34406 6.48954 6.52253 6.69519 7.44483 7.44643 7.47606 7.51049 7.72420 8.14822 9.11981 9.71518 10.35233 11.31927 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026300 B = 0.002137 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.387227 B =13101.907443 C =13883.928503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.167 4.167 5 C 0.401 3.599 6 O -0.463 6.463 7 C -0.228 4.228 8 C -0.033 4.033 9 C -0.174 4.174 10 C 0.179 3.821 11 O -0.299 6.299 12 C 0.060 3.940 13 H 0.085 0.915 14 C -0.136 4.136 15 C 0.178 3.822 16 N -0.602 5.602 17 C -0.233 4.233 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.922 5.922 21 Si 0.915 3.085 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.284 1.284 25 C 0.121 3.879 26 C -0.224 4.224 27 C -0.015 4.015 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.255 0.745 44 H 0.031 0.969 45 H 0.044 0.956 46 H 0.141 0.859 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.021 -18.670 3.547 25.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.204 4.204 5 C 0.280 3.720 6 O -0.340 6.340 7 C -0.229 4.229 8 C -0.051 4.051 9 C -0.193 4.193 10 C 0.131 3.869 11 O -0.210 6.210 12 C 0.004 3.996 13 H 0.102 0.898 14 C -0.174 4.174 15 C 0.054 3.946 16 N -0.330 5.330 17 C -0.361 4.361 18 H 0.097 0.903 19 C -0.202 4.202 20 N -0.569 5.569 21 Si 0.745 3.255 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.211 1.211 25 C -0.006 4.006 26 C -0.242 4.242 27 C -0.033 4.033 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.049 0.951 45 H 0.062 0.938 46 H 0.159 0.841 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.107 -18.110 3.536 25.162 hybrid contribution 0.254 0.981 -0.531 1.144 sum -16.853 -17.129 3.005 24.216 Atomic orbital electron populations 1.21768 0.95796 1.01515 1.01998 1.21546 0.96073 0.96615 1.02020 1.21444 0.93427 0.96736 1.03363 1.22061 0.97716 0.96077 1.04561 1.22308 0.87867 0.90923 0.70901 1.90519 1.58430 1.47783 1.37234 1.20295 0.94734 0.94275 1.13597 1.21031 0.91857 0.98497 0.93762 1.20286 0.95809 0.94449 1.08746 1.19509 0.83499 0.93852 0.89999 1.86079 1.19098 1.30336 1.85498 1.24019 0.97528 0.78513 0.99550 0.89755 1.23058 0.92960 1.01381 1.00018 1.21217 0.95102 0.89452 0.88869 1.44327 1.38456 1.19033 1.31149 1.19013 1.15875 0.94531 1.06663 0.90304 1.24825 0.98237 0.98896 0.98271 1.69924 1.23819 1.35253 1.27903 0.86152 0.77340 0.82475 0.79509 1.21064 1.21490 1.21060 1.21914 0.94322 0.91222 0.93165 1.21347 0.93612 0.99804 1.09452 1.21075 0.94938 0.96163 0.91130 0.92686 0.92694 0.92804 0.91963 0.91944 0.91369 0.91397 0.88424 0.88389 0.84772 0.84650 0.91288 0.91026 0.92976 0.93117 0.93515 0.95145 0.93812 0.84137 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.13 -0.73 5.93 -26.73 -0.16 -0.89 16 3 C -0.11 -0.85 4.50 -26.73 -0.12 -0.97 16 4 C -0.17 -1.20 4.30 -27.89 -0.12 -1.32 16 5 C 0.40 4.39 7.11 -30.83 -0.22 4.17 16 6 O -0.46 -6.53 15.97 5.54 0.09 -6.45 16 7 C -0.23 -2.62 5.87 -105.06 -0.62 -3.24 16 8 C -0.03 -0.32 9.44 -39.31 -0.37 -0.69 16 9 C -0.17 -2.00 9.95 -39.68 -0.39 -2.39 16 10 C 0.18 2.54 6.69 -38.96 -0.26 2.28 16 11 O -0.30 -4.81 9.93 -18.69 -0.19 -4.99 16 12 C 0.06 1.06 2.80 -24.58 -0.07 0.99 16 13 H 0.08 1.43 6.23 -51.93 -0.32 1.11 16 14 C -0.14 -2.49 6.69 -24.89 -0.17 -2.66 16 15 C 0.18 4.20 5.37 -3.06 -0.02 4.19 16 16 N -0.60 -15.15 3.39 -170.07 -0.58 -15.72 16 17 C -0.23 -6.41 10.28 -15.06 -0.15 -6.56 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 20 N -0.92 -26.53 10.31 55.49 0.57 -25.96 16 21 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.12 2.49 6.84 -2.53 -0.02 2.48 16 26 C -0.22 -3.13 8.89 -39.68 -0.35 -3.49 16 27 C -0.01 -0.19 9.57 -39.31 -0.38 -0.57 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 34 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 35 H 0.10 0.53 8.08 -51.93 -0.42 0.11 16 36 H 0.10 0.55 8.09 -51.93 -0.42 0.13 16 37 H 0.13 0.82 7.04 -52.49 -0.37 0.45 16 38 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.05 1.34 7.38 -51.93 -0.38 0.96 16 42 H 0.05 1.32 7.51 -51.93 -0.39 0.93 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.04 0.88 7.78 -51.93 -0.40 0.47 16 46 H 0.14 2.04 5.61 -52.48 -0.29 1.75 16 47 H 0.13 1.70 7.64 -52.49 -0.40 1.30 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -30.89 380.99 -10.12 -41.02 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.60 Total: -0.99 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -3.14 Total: -9.46 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: -0.01 Total: -41.68 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.10 Total: -11.44 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.89 -10.12 -41.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226771844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.149 kcal (2) G-P(sol) polarization free energy of solvation -30.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds