Wall clock time and date at job start Tue Mar 31 2020 12:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47234 * 2 1 4 4 C 1.52993 * 109.47443 * 179.97438 * 3 2 1 5 5 C 1.50692 * 109.47493 * 180.02562 * 4 3 2 6 6 O 1.21297 * 119.99711 * 359.97438 * 5 4 3 7 7 C 1.46857 * 120.00317 * 180.02562 * 5 4 3 8 8 C 1.40037 * 120.11315 * 359.72133 * 7 5 4 9 9 C 1.37125 * 119.88110 * 179.74040 * 8 7 5 10 10 C 1.39074 * 120.11466 * 0.53698 * 9 8 7 11 11 O 1.35662 * 119.88291 * 179.69607 * 10 9 8 12 12 C 1.42906 * 116.99849 * 185.69253 * 11 10 9 13 13 H 1.08997 * 110.88772 * 32.42304 * 12 11 10 14 14 C 1.55157 * 111.00201 * 156.30231 * 12 11 10 15 15 C 1.54330 * 102.94196 * 153.57381 * 14 12 11 16 16 N 1.47020 * 107.26959 * 337.81083 * 15 14 12 17 17 C 1.36940 * 125.65209 * 178.95863 * 16 15 14 18 18 H 1.07996 * 120.00314 * 179.97438 * 17 16 15 19 19 C 1.38818 * 119.99207 * 359.97438 * 17 16 15 20 20 N 1.31618 * 120.00430 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99406 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47540 * 60.00191 * 21 19 17 23 23 H 1.48503 * 109.46818 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47430 * 299.99713 * 21 19 17 25 25 C 1.47425 * 108.70563 * 358.93730 * 16 15 14 26 26 C 1.39076 * 120.23142 * 359.72013 * 10 9 8 27 27 C 1.37118 * 120.11768 * 0.02562 * 26 10 9 28 28 H 1.08997 * 109.46911 * 60.00605 * 1 2 3 29 29 H 1.08996 * 109.47534 * 300.00124 * 1 2 3 30 30 H 1.09002 * 109.46672 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47205 * 119.99960 * 2 1 3 32 32 H 1.08996 * 109.47534 * 239.99876 * 2 1 3 33 33 H 1.08996 * 109.46922 * 300.00022 * 3 2 1 34 34 H 1.09006 * 109.46991 * 59.99436 * 3 2 1 35 35 H 1.09006 * 109.47331 * 300.00165 * 4 3 2 36 36 H 1.09006 * 109.47258 * 59.99881 * 4 3 2 37 37 H 1.07996 * 120.05972 * 359.97438 * 8 7 5 38 38 H 1.07996 * 119.94060 * 180.25701 * 9 8 7 39 39 H 1.08997 * 110.72376 * 271.93757 * 14 12 11 40 40 H 1.09004 * 110.71898 * 35.03961 * 14 12 11 41 41 H 1.08999 * 109.87888 * 97.22408 * 15 14 12 42 42 H 1.08999 * 109.88379 * 218.39251 * 15 14 12 43 43 H 0.96996 * 120.00053 * 180.02562 * 20 19 17 44 44 H 1.08996 * 110.36818 * 265.28967 * 25 16 15 45 45 H 1.08998 * 110.36872 * 142.96709 * 25 16 15 46 46 H 1.08005 * 119.94363 * 179.97438 * 26 10 9 47 47 H 1.07997 * 120.05961 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0723 2.8633 0.0013 6 8 3.2840 3.7852 0.0008 7 6 5.5161 3.1317 0.0014 8 6 6.4282 2.0691 0.0068 9 6 7.7754 2.3252 0.0015 10 6 8.2363 3.6373 0.0021 11 8 9.5700 3.8852 0.0030 12 6 9.9762 5.2494 0.1298 13 1 9.2722 5.8089 0.7458 14 6 11.4159 5.3503 0.6996 15 6 11.9141 6.7007 0.1428 16 7 11.1014 7.0106 -1.0425 17 6 11.2142 8.1352 -1.8158 18 1 10.5675 8.2702 -2.6701 19 6 12.1599 9.1015 -1.5015 20 7 12.9485 8.9367 -0.4606 21 14 12.3133 10.6358 -2.5559 22 1 11.0261 11.3761 -2.5431 23 1 13.3885 11.5042 -2.0126 24 1 12.6471 10.2473 -3.9497 25 6 10.1452 5.9101 -1.2611 26 6 7.3346 4.6962 0.0021 27 6 5.9855 4.4511 0.0021 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.9330 0.9288 0.8909 36 1 3.9337 0.9286 -0.8891 37 1 6.0714 1.0499 0.0113 38 1 8.4796 1.5064 0.0015 39 1 11.3993 5.3651 1.7893 40 1 12.0331 4.5288 0.3357 41 1 11.7872 7.4807 0.8936 42 1 12.9643 6.6211 -0.1382 43 1 13.6090 9.6122 -0.2408 44 1 10.5493 5.1926 -1.9752 45 1 9.1908 6.3011 -1.6137 46 1 7.6977 5.7134 0.0029 47 1 5.2862 5.2741 0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226771844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:41 Heat of formation + Delta-G solvation = -55.583466 kcal Electronic energy + Delta-G solvation = -25461.504734 eV Core-core repulsion = 21802.174733 eV Total energy + Delta-G solvation = -3659.330000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.57460 -40.58024 -38.96606 -37.58055 -36.22757 -34.35613 -32.57731 -32.02876 -31.22657 -30.52446 -29.15238 -26.69062 -26.10424 -24.23806 -23.58759 -22.20318 -21.87829 -21.78207 -20.48179 -19.47746 -19.02232 -17.61875 -17.06084 -16.81983 -16.78290 -16.55286 -15.99959 -15.80022 -15.47567 -15.37083 -15.25321 -14.64302 -14.45956 -14.28546 -14.05423 -13.99126 -13.73344 -13.62747 -13.52125 -13.17296 -13.03452 -12.89366 -12.68787 -12.20044 -12.15039 -12.11790 -12.09002 -11.97187 -11.90442 -11.84305 -11.56561 -11.49592 -11.40432 -10.75429 -10.62882 -10.13843 -9.28675 -8.99397 -7.90659 -5.28116 -0.29291 0.34792 1.44599 1.45016 1.47692 1.54055 2.00903 2.47342 2.78303 3.06073 3.28214 3.54630 3.60861 3.76666 3.81723 3.87923 3.96611 4.00893 4.10890 4.13060 4.20698 4.35775 4.44138 4.51999 4.52449 4.55849 4.69516 4.71881 4.77086 4.83175 4.90712 4.95283 4.98047 4.98500 5.05159 5.15003 5.22541 5.29237 5.30991 5.38300 5.40504 5.42625 5.53208 5.55806 5.65996 5.68955 6.11378 6.33490 6.62008 7.03226 7.67753 8.30968 9.19339 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.026300 B = 0.002137 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.387227 B =13101.907443 C =13883.928503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.120 4.120 3 C -0.112 4.112 4 C -0.160 4.160 5 C 0.401 3.599 6 O -0.504 6.504 7 C -0.230 4.230 8 C -0.013 4.013 9 C -0.168 4.168 10 C 0.152 3.848 11 O -0.301 6.301 12 C 0.081 3.919 13 H 0.089 0.911 14 C -0.122 4.122 15 C 0.185 3.815 16 N -0.623 5.623 17 C -0.250 4.250 18 H 0.082 0.918 19 C -0.061 4.061 20 N -0.948 5.948 21 Si 0.981 3.019 22 H -0.277 1.277 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.119 3.881 26 C -0.234 4.234 27 C -0.032 4.032 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.184 0.816 38 H 0.160 0.840 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.023 0.977 42 H 0.018 0.982 43 H 0.250 0.750 44 H 0.028 0.972 45 H 0.045 0.955 46 H 0.125 0.875 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.183 -21.837 3.500 28.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.157 4.157 3 C -0.150 4.150 4 C -0.197 4.197 5 C 0.282 3.718 6 O -0.383 6.383 7 C -0.231 4.231 8 C -0.031 4.031 9 C -0.186 4.186 10 C 0.105 3.895 11 O -0.213 6.213 12 C 0.024 3.976 13 H 0.107 0.893 14 C -0.160 4.160 15 C 0.060 3.940 16 N -0.351 5.351 17 C -0.379 4.379 18 H 0.099 0.901 19 C -0.255 4.255 20 N -0.596 5.596 21 Si 0.809 3.191 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.007 4.007 26 C -0.253 4.253 27 C -0.051 4.051 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.201 0.799 38 H 0.177 0.823 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.041 0.959 42 H 0.036 0.964 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.063 0.937 46 H 0.143 0.857 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.297 -21.316 3.482 28.307 hybrid contribution 0.480 1.887 -0.540 2.020 sum -17.816 -19.429 2.942 26.525 Atomic orbital electron populations 1.21803 0.96192 1.01985 1.01482 1.21522 0.95762 0.95305 1.03151 1.21422 0.94071 0.97716 1.01792 1.22134 0.97082 0.93371 1.07098 1.22889 0.87211 0.92400 0.69256 1.90520 1.59184 1.49454 1.39176 1.20591 0.95786 0.94059 1.12643 1.21491 0.90560 1.00077 0.90962 1.20658 0.97051 0.93654 1.07285 1.19825 0.82474 0.95144 0.92014 1.86044 1.20483 1.28444 1.86362 1.23564 0.97249 0.79638 0.97132 0.89292 1.22870 0.93370 0.98356 1.01386 1.20967 0.93553 0.91588 0.87879 1.44601 1.39678 1.19522 1.31321 1.19390 1.15812 0.95565 1.07086 0.90056 1.25671 0.98198 1.01898 0.99687 1.70136 1.24275 1.35887 1.29327 0.85124 0.77241 0.78776 0.77999 1.20294 1.21718 1.20305 1.22004 0.93251 0.90182 0.95276 1.21240 0.94156 0.99332 1.10569 1.21117 0.94459 0.97280 0.92205 0.93303 0.93228 0.91813 0.90706 0.90800 0.93126 0.93023 0.85502 0.85638 0.79916 0.82257 0.88676 0.89931 0.95912 0.96419 0.94087 0.95427 0.93658 0.85698 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.12 -1.05 5.93 30.59 0.18 -0.87 16 3 C -0.11 -1.48 4.50 30.59 0.14 -1.34 16 4 C -0.16 -1.67 4.30 29.84 0.13 -1.54 16 5 C 0.40 7.95 7.11 27.94 0.20 8.15 16 6 O -0.50 -14.17 15.97 -3.08 -0.05 -14.22 16 7 C -0.23 -4.75 5.87 -20.15 -0.12 -4.87 16 8 C -0.01 -0.20 9.44 22.44 0.21 0.02 16 9 C -0.17 -3.23 9.95 22.21 0.22 -3.01 16 10 C 0.15 4.06 6.69 22.67 0.15 4.21 16 11 O -0.30 -9.25 9.93 -89.78 -0.89 -10.14 16 12 C 0.08 2.83 2.80 31.99 0.09 2.92 16 13 H 0.09 3.02 6.23 -2.39 -0.01 3.01 16 14 C -0.12 -4.40 6.69 31.79 0.21 -4.19 16 15 C 0.18 9.02 5.37 86.73 0.47 9.49 16 16 N -0.62 -32.28 3.39 -691.98 -2.35 -34.63 16 17 C -0.25 -14.10 10.28 84.03 0.86 -13.24 16 18 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 19 C -0.06 -3.47 5.49 84.86 0.47 -3.00 16 20 N -0.95 -56.42 10.31 21.65 0.22 -56.20 16 21 Si 0.98 45.67 29.55 68.60 2.03 47.70 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 25 C 0.12 4.98 6.84 86.86 0.59 5.57 16 26 C -0.23 -6.55 8.89 22.21 0.20 -6.36 16 27 C -0.03 -0.84 9.57 22.44 0.21 -0.62 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.05 0.83 8.10 -2.39 -0.02 0.82 16 34 H 0.05 0.84 8.10 -2.38 -0.02 0.82 16 35 H 0.13 0.67 8.08 -2.38 -0.02 0.65 16 36 H 0.13 0.71 8.09 -2.38 -0.02 0.69 16 37 H 0.18 0.95 7.04 -2.91 -0.02 0.92 16 38 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 39 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 40 H 0.08 2.81 8.14 -2.38 -0.02 2.79 16 41 H 0.02 1.22 7.38 -2.39 -0.02 1.20 16 42 H 0.02 0.96 7.51 -2.39 -0.02 0.94 16 43 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.05 1.86 7.78 -2.39 -0.02 1.84 16 46 H 0.13 3.79 5.61 -2.91 -0.02 3.77 16 47 H 0.12 3.35 7.64 -2.91 -0.02 3.32 16 Total: -1.00 -70.52 380.99 4.83 -65.69 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.94 Total: 11.32 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 4.93 Total: -9.53 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -2.13 Total: -90.82 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.94 Total: -24.36 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -70.52 4.83 -65.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226771844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.106 kcal (2) G-P(sol) polarization free energy of solvation -70.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds