Wall clock time and date at job start Tue Mar 31 2020 12:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46948 * 2 1 4 4 C 1.53005 * 109.47114 * 180.02562 * 3 2 1 5 5 C 1.50694 * 109.47185 * 180.02562 * 4 3 2 6 6 O 1.21300 * 120.00368 * 359.97438 * 5 4 3 7 7 C 1.46864 * 120.00047 * 179.97438 * 5 4 3 8 8 C 1.40040 * 120.11440 * 179.97438 * 7 5 4 9 9 C 1.37112 * 119.88457 * 180.02562 * 8 7 5 10 10 C 1.39077 * 120.11349 * 359.97438 * 9 8 7 11 11 O 1.35661 * 119.88405 * 180.02562 * 10 9 8 12 12 C 1.42907 * 117.00249 * 355.07003 * 11 10 9 13 13 H 1.08997 * 110.88204 * 327.61957 * 12 11 10 14 14 C 1.55152 * 111.00495 * 203.74318 * 12 11 10 15 15 C 1.54320 * 102.94054 * 206.38300 * 14 12 11 16 16 N 1.47024 * 107.27310 * 22.19261 * 15 14 12 17 17 C 1.36932 * 125.64968 * 181.02549 * 16 15 14 18 18 H 1.08001 * 120.00095 * 173.45623 * 17 16 15 19 19 C 1.38815 * 120.00038 * 353.45276 * 17 16 15 20 20 N 1.31616 * 120.00224 * 167.42166 * 19 17 16 21 21 Si 1.86806 * 119.99965 * 347.41428 * 19 17 16 22 22 H 1.48501 * 109.46879 * 186.09288 * 21 19 17 23 23 H 1.48496 * 109.46615 * 66.09609 * 21 19 17 24 24 H 1.48499 * 109.47022 * 306.09341 * 21 19 17 25 25 C 1.47425 * 108.69867 * 1.28538 * 16 15 14 26 26 C 1.39078 * 120.23174 * 0.28722 * 10 9 8 27 27 C 1.37119 * 120.11585 * 359.45593 * 26 10 9 28 28 H 1.09001 * 109.47136 * 60.00030 * 1 2 3 29 29 H 1.09008 * 109.46880 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46905 * 299.99858 * 1 2 3 31 31 H 1.08998 * 109.47349 * 239.99885 * 2 1 3 32 32 H 1.09001 * 109.47136 * 119.99970 * 2 1 3 33 33 H 1.08995 * 109.47202 * 60.00324 * 3 2 1 34 34 H 1.09001 * 109.47178 * 299.99945 * 3 2 1 35 35 H 1.08998 * 109.47523 * 59.99677 * 4 3 2 36 36 H 1.09001 * 109.46796 * 299.99864 * 4 3 2 37 37 H 1.08004 * 120.05728 * 0.02562 * 8 7 5 38 38 H 1.07996 * 119.94126 * 180.02562 * 9 8 7 39 39 H 1.09000 * 110.72482 * 88.02087 * 14 12 11 40 40 H 1.09005 * 110.87326 * 324.81202 * 14 12 11 41 41 H 1.08995 * 109.88420 * 262.77249 * 15 14 12 42 42 H 1.09003 * 110.01301 * 141.68229 * 15 14 12 43 43 H 0.97010 * 119.99631 * 5.07193 * 20 19 17 44 44 H 1.09005 * 110.36273 * 94.48626 * 25 16 15 45 45 H 1.09002 * 110.36514 * 216.80097 * 25 16 15 46 46 H 1.07998 * 119.94224 * 179.72902 * 26 10 9 47 47 H 1.07998 * 120.06282 * 180.27052 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2841 3.7853 0.0004 7 6 5.5162 3.1317 0.0001 8 6 5.9856 4.4511 0.0002 9 6 7.3346 4.6962 -0.0003 10 6 8.2363 3.6373 -0.0002 11 8 9.5700 3.8853 -0.0001 12 6 9.9761 5.2510 -0.1095 13 1 9.2707 5.8187 -0.7162 14 6 11.4144 5.3595 -0.6812 15 6 11.9136 6.7027 -0.1084 16 7 11.1037 6.9973 1.0828 17 6 11.2183 8.1116 1.8702 18 1 10.5064 8.2883 2.6630 19 6 12.2496 9.0143 1.6497 20 7 12.2247 10.1962 2.2281 21 14 13.6730 8.5513 0.5319 22 1 14.7055 9.6176 0.5779 23 1 13.1797 8.3996 -0.8605 24 1 14.2651 7.2688 0.9899 25 6 10.1519 5.8911 1.2925 26 6 7.7754 2.3252 -0.0057 27 6 6.4283 2.0691 0.0000 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9286 0.8891 37 1 5.2862 5.2741 0.0005 38 1 7.6976 5.7134 0.0002 39 1 11.3952 5.3883 -1.7707 40 1 12.0353 4.5356 -0.3294 41 1 11.7848 7.4922 -0.8487 42 1 12.9647 6.6224 0.1687 43 1 11.5252 10.4096 2.8655 44 1 10.5625 5.1655 1.9947 45 1 9.1986 6.2748 1.6563 46 1 8.4797 1.5065 -0.0101 47 1 6.0714 1.0498 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226771845.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:46 Heat of formation + Delta-G solvation = -28.499301 kcal Electronic energy + Delta-G solvation = -25552.371750 eV Core-core repulsion = 21894.216207 eV Total energy + Delta-G solvation = -3658.155543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.63335 -39.65141 -37.91399 -36.47206 -35.70135 -32.60310 -31.81842 -31.16290 -30.13215 -29.47512 -28.34009 -25.56825 -24.31295 -23.12838 -22.83321 -21.38009 -21.05345 -20.51612 -19.65893 -18.49190 -17.61259 -16.78146 -16.25301 -16.16565 -15.71321 -15.24991 -14.89677 -14.74468 -14.57400 -14.50492 -13.98780 -13.76800 -13.66579 -13.36134 -13.14324 -12.84314 -12.72647 -12.62252 -12.54517 -12.33997 -11.94358 -11.68654 -11.56867 -11.50891 -11.40446 -11.22642 -11.09836 -10.95185 -10.61931 -10.44476 -9.96159 -9.82922 -9.41512 -9.29671 -9.05983 -8.84680 -8.32847 -7.14317 -6.35930 -3.29724 0.56783 1.19597 2.27102 3.06254 3.32958 3.41300 3.63124 3.64543 3.76712 4.47716 4.53387 4.56682 4.56968 4.61239 4.70521 4.81989 4.87540 4.94107 5.02981 5.04480 5.09563 5.13561 5.18834 5.23738 5.32471 5.41948 5.43752 5.44570 5.52523 5.57195 5.66024 5.76337 5.78716 5.82722 5.87940 5.98335 6.01217 6.02308 6.12656 6.22063 6.24340 6.35538 6.37682 6.56789 6.60739 7.34403 7.38861 7.54104 8.25206 8.97066 9.46723 10.11899 11.14286 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033002 B = 0.002164 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.229636 B =12936.567605 C =13523.467458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.167 4.167 5 C 0.400 3.600 6 O -0.462 6.462 7 C -0.225 4.225 8 C -0.015 4.015 9 C -0.223 4.223 10 C 0.177 3.823 11 O -0.298 6.298 12 C 0.061 3.939 13 H 0.089 0.911 14 C -0.119 4.119 15 C 0.095 3.905 16 N -0.609 5.609 17 C -0.325 4.325 18 H 0.080 0.920 19 C -0.025 4.025 20 N -0.928 5.928 21 Si 1.080 2.920 22 H -0.300 1.300 23 H -0.285 1.285 24 H -0.297 1.297 25 C 0.122 3.878 26 C -0.172 4.172 27 C -0.033 4.033 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.134 0.866 38 H 0.141 0.859 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.261 0.739 44 H 0.036 0.964 45 H 0.050 0.950 46 H 0.136 0.864 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.070 -22.413 -7.652 28.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.204 4.204 5 C 0.279 3.721 6 O -0.338 6.338 7 C -0.226 4.226 8 C -0.033 4.033 9 C -0.242 4.242 10 C 0.129 3.871 11 O -0.209 6.209 12 C 0.004 3.996 13 H 0.107 0.893 14 C -0.157 4.157 15 C -0.030 4.030 16 N -0.339 5.339 17 C -0.452 4.452 18 H 0.098 0.902 19 C -0.224 4.224 20 N -0.569 5.569 21 Si 0.915 3.085 22 H -0.228 1.228 23 H -0.212 1.212 24 H -0.226 1.226 25 C -0.005 4.005 26 C -0.191 4.191 27 C -0.051 4.051 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.152 0.848 38 H 0.158 0.842 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.068 0.932 46 H 0.154 0.846 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.921 -21.380 -8.258 27.348 hybrid contribution -1.311 -0.504 0.857 1.645 sum -16.232 -21.884 -7.401 28.234 Atomic orbital electron populations 1.21770 0.95769 1.01535 1.02012 1.21545 0.96102 0.96582 1.02021 1.21447 0.93376 0.96777 1.03387 1.22062 0.97775 0.95995 1.04572 1.22319 0.87825 0.90978 0.70943 1.90526 1.58413 1.47772 1.37088 1.20323 0.94818 0.94250 1.13235 1.21085 0.94931 0.96227 0.91056 1.21332 0.93670 0.99725 1.09444 1.19480 0.83231 0.93924 0.90444 1.86055 1.19383 1.29594 1.85891 1.24003 0.97039 0.79022 0.99496 0.89287 1.22649 0.93733 0.98962 1.00325 1.22224 0.95935 0.94324 0.90474 1.44665 1.39909 1.20574 1.28725 1.20182 1.12691 0.98040 1.14281 0.90222 1.25842 1.00141 0.93415 1.03051 1.70913 1.37908 1.18320 1.29801 0.83721 0.75958 0.73225 0.75611 1.22845 1.21233 1.22566 1.21962 0.94705 0.90824 0.93027 1.20281 0.95840 0.94374 1.08583 1.21045 0.91828 0.98570 0.93690 0.92694 0.92786 0.92667 0.91963 0.91937 0.91347 0.91381 0.88398 0.88374 0.84784 0.84172 0.90370 0.90075 0.92612 0.93801 0.92837 0.94653 0.93168 0.84587 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.12 -0.71 5.93 -26.73 -0.16 -0.87 16 3 C -0.11 -0.83 4.50 -26.73 -0.12 -0.95 16 4 C -0.17 -1.14 4.30 -27.88 -0.12 -1.26 16 5 C 0.40 4.24 7.11 -30.82 -0.22 4.02 16 6 O -0.46 -6.38 15.97 5.54 0.09 -6.29 16 7 C -0.23 -2.48 5.87 -105.06 -0.62 -3.10 16 8 C -0.01 -0.18 9.57 -39.31 -0.38 -0.56 16 9 C -0.22 -2.98 8.91 -39.68 -0.35 -3.33 16 10 C 0.18 2.36 6.69 -38.96 -0.26 2.09 16 11 O -0.30 -4.44 9.93 -18.68 -0.19 -4.63 16 12 C 0.06 0.99 2.81 -24.47 -0.07 0.92 16 13 H 0.09 1.37 6.19 -51.93 -0.32 1.05 16 14 C -0.12 -1.93 6.68 -24.90 -0.17 -2.09 16 15 C 0.09 2.00 4.65 -3.06 -0.01 1.98 16 16 N -0.61 -14.75 3.36 -169.94 -0.57 -15.32 16 17 C -0.32 -9.25 10.60 -15.06 -0.16 -9.41 16 18 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 19 C -0.03 -0.74 5.50 -17.43 -0.10 -0.84 16 20 N -0.93 -29.04 13.70 55.49 0.76 -28.27 16 21 Si 1.08 26.44 24.50 -169.99 -4.17 22.28 16 22 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 23 H -0.28 -6.29 5.45 56.52 0.31 -5.98 16 24 H -0.30 -6.94 6.47 56.52 0.37 -6.57 16 25 C 0.12 2.42 6.88 -2.41 -0.02 2.41 16 26 C -0.17 -1.85 9.95 -39.68 -0.39 -2.24 16 27 C -0.03 -0.30 9.44 -39.31 -0.37 -0.67 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 35 H 0.10 0.50 8.08 -51.93 -0.42 0.08 16 36 H 0.10 0.52 8.08 -51.93 -0.42 0.10 16 37 H 0.13 1.66 7.64 -52.48 -0.40 1.26 16 38 H 0.14 1.94 5.66 -52.49 -0.30 1.64 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.21 6.14 -51.93 -0.32 0.89 16 42 H 0.04 0.97 3.97 -51.93 -0.21 0.77 16 43 H 0.26 8.10 8.73 -40.82 -0.36 7.75 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 1.00 7.85 -51.93 -0.41 0.59 16 46 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 47 H 0.14 0.76 7.04 -52.49 -0.37 0.39 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -32.84 372.62 -9.11 -41.95 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.51 Total: -0.93 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -3.14 Total: -14.40 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.19 Total: -43.59 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.10 Total: -10.92 kcal Atomic # 14 Polarization: 26.44 SS G_CDS: -4.17 Total: 22.28 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.84 -9.11 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226771845.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.449 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds