Wall clock time and date at job start Tue Mar 31 2020 12:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46948 * 2 1 4 4 C 1.53005 * 109.47114 * 180.02562 * 3 2 1 5 5 C 1.50694 * 109.47185 * 180.02562 * 4 3 2 6 6 O 1.21300 * 120.00368 * 359.97438 * 5 4 3 7 7 C 1.46864 * 120.00047 * 179.97438 * 5 4 3 8 8 C 1.40040 * 120.11440 * 179.97438 * 7 5 4 9 9 C 1.37112 * 119.88457 * 180.02562 * 8 7 5 10 10 C 1.39077 * 120.11349 * 359.97438 * 9 8 7 11 11 O 1.35661 * 119.88405 * 180.02562 * 10 9 8 12 12 C 1.42907 * 117.00249 * 355.07003 * 11 10 9 13 13 H 1.08997 * 110.88204 * 327.61957 * 12 11 10 14 14 C 1.55152 * 111.00495 * 203.74318 * 12 11 10 15 15 C 1.54320 * 102.94054 * 206.38300 * 14 12 11 16 16 N 1.47024 * 107.27310 * 22.19261 * 15 14 12 17 17 C 1.36932 * 125.64968 * 181.02549 * 16 15 14 18 18 H 1.08001 * 120.00095 * 173.45623 * 17 16 15 19 19 C 1.38815 * 120.00038 * 353.45276 * 17 16 15 20 20 N 1.31616 * 120.00224 * 167.42166 * 19 17 16 21 21 Si 1.86806 * 119.99965 * 347.41428 * 19 17 16 22 22 H 1.48501 * 109.46879 * 186.09288 * 21 19 17 23 23 H 1.48496 * 109.46615 * 66.09609 * 21 19 17 24 24 H 1.48499 * 109.47022 * 306.09341 * 21 19 17 25 25 C 1.47425 * 108.69867 * 1.28538 * 16 15 14 26 26 C 1.39078 * 120.23174 * 0.28722 * 10 9 8 27 27 C 1.37119 * 120.11585 * 359.45593 * 26 10 9 28 28 H 1.09001 * 109.47136 * 60.00030 * 1 2 3 29 29 H 1.09008 * 109.46880 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46905 * 299.99858 * 1 2 3 31 31 H 1.08998 * 109.47349 * 239.99885 * 2 1 3 32 32 H 1.09001 * 109.47136 * 119.99970 * 2 1 3 33 33 H 1.08995 * 109.47202 * 60.00324 * 3 2 1 34 34 H 1.09001 * 109.47178 * 299.99945 * 3 2 1 35 35 H 1.08998 * 109.47523 * 59.99677 * 4 3 2 36 36 H 1.09001 * 109.46796 * 299.99864 * 4 3 2 37 37 H 1.08004 * 120.05728 * 0.02562 * 8 7 5 38 38 H 1.07996 * 119.94126 * 180.02562 * 9 8 7 39 39 H 1.09000 * 110.72482 * 88.02087 * 14 12 11 40 40 H 1.09005 * 110.87326 * 324.81202 * 14 12 11 41 41 H 1.08995 * 109.88420 * 262.77249 * 15 14 12 42 42 H 1.09003 * 110.01301 * 141.68229 * 15 14 12 43 43 H 0.97010 * 119.99631 * 5.07193 * 20 19 17 44 44 H 1.09005 * 110.36273 * 94.48626 * 25 16 15 45 45 H 1.09002 * 110.36514 * 216.80097 * 25 16 15 46 46 H 1.07998 * 119.94224 * 179.72902 * 26 10 9 47 47 H 1.07998 * 120.06282 * 180.27052 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2841 3.7853 0.0004 7 6 5.5162 3.1317 0.0001 8 6 5.9856 4.4511 0.0002 9 6 7.3346 4.6962 -0.0003 10 6 8.2363 3.6373 -0.0002 11 8 9.5700 3.8853 -0.0001 12 6 9.9761 5.2510 -0.1095 13 1 9.2707 5.8187 -0.7162 14 6 11.4144 5.3595 -0.6812 15 6 11.9136 6.7027 -0.1084 16 7 11.1037 6.9973 1.0828 17 6 11.2183 8.1116 1.8702 18 1 10.5064 8.2883 2.6630 19 6 12.2496 9.0143 1.6497 20 7 12.2247 10.1962 2.2281 21 14 13.6730 8.5513 0.5319 22 1 14.7055 9.6176 0.5779 23 1 13.1797 8.3996 -0.8605 24 1 14.2651 7.2688 0.9899 25 6 10.1519 5.8911 1.2925 26 6 7.7754 2.3252 -0.0057 27 6 6.4283 2.0691 0.0000 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9286 0.8891 37 1 5.2862 5.2741 0.0005 38 1 7.6976 5.7134 0.0002 39 1 11.3952 5.3883 -1.7707 40 1 12.0353 4.5356 -0.3294 41 1 11.7848 7.4922 -0.8487 42 1 12.9647 6.6224 0.1687 43 1 11.5252 10.4096 2.8655 44 1 10.5625 5.1655 1.9947 45 1 9.1986 6.2748 1.6563 46 1 8.4797 1.5065 -0.0101 47 1 6.0714 1.0498 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226771845.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:45 Heat of formation + Delta-G solvation = -48.017212 kcal Electronic energy + Delta-G solvation = -25553.218110 eV Core-core repulsion = 21894.216207 eV Total energy + Delta-G solvation = -3659.001903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.63853 -40.64905 -39.18826 -37.74513 -36.24786 -34.64533 -32.61238 -32.20861 -31.40135 -30.57784 -29.86537 -26.41409 -25.91443 -24.26122 -23.66135 -22.66635 -21.97657 -21.87205 -20.53365 -19.67026 -19.56551 -17.74677 -17.38620 -17.04956 -16.83180 -16.51838 -16.09280 -15.78178 -15.63321 -15.51588 -15.37475 -14.94420 -14.60466 -14.50234 -14.13990 -14.02726 -13.98550 -13.73526 -13.62559 -13.25791 -13.19736 -13.09736 -12.93688 -12.42507 -12.17016 -12.06671 -11.93881 -11.85900 -11.73444 -11.63541 -11.42411 -11.40208 -11.06329 -10.80460 -10.65848 -10.17564 -9.33420 -9.19280 -8.68768 -5.54804 -0.32994 0.31019 1.37591 1.41678 1.49367 1.69462 1.93616 2.51904 2.74379 3.02965 3.11685 3.24713 3.42097 3.66633 3.71899 3.72411 3.88721 3.96801 4.09017 4.09689 4.13360 4.22953 4.31583 4.34748 4.48923 4.50705 4.58487 4.58951 4.69657 4.72341 4.78883 4.82955 4.88144 4.94189 4.96609 5.02977 5.08561 5.13213 5.19408 5.25534 5.28592 5.37349 5.40920 5.42412 5.51531 5.63465 6.01234 6.26510 6.59202 6.75120 7.34145 7.98489 8.82317 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033002 B = 0.002164 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.229636 B =12936.567605 C =13523.467458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.120 4.120 3 C -0.113 4.113 4 C -0.160 4.160 5 C 0.400 3.600 6 O -0.505 6.505 7 C -0.229 4.229 8 C -0.034 4.034 9 C -0.235 4.235 10 C 0.152 3.848 11 O -0.297 6.297 12 C 0.079 3.921 13 H 0.095 0.905 14 C -0.106 4.106 15 C 0.083 3.917 16 N -0.631 5.631 17 C -0.317 4.317 18 H 0.043 0.957 19 C -0.084 4.084 20 N -0.962 5.962 21 Si 1.117 2.883 22 H -0.312 1.312 23 H -0.243 1.243 24 H -0.278 1.278 25 C 0.117 3.883 26 C -0.165 4.165 27 C -0.014 4.014 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.052 0.948 42 H 0.043 0.957 43 H 0.245 0.755 44 H 0.033 0.967 45 H 0.037 0.963 46 H 0.163 0.837 47 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.798 -27.124 -9.836 32.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.157 4.157 3 C -0.150 4.150 4 C -0.196 4.196 5 C 0.281 3.719 6 O -0.384 6.384 7 C -0.230 4.230 8 C -0.053 4.053 9 C -0.254 4.254 10 C 0.106 3.894 11 O -0.209 6.209 12 C 0.022 3.978 13 H 0.113 0.887 14 C -0.144 4.144 15 C -0.040 4.040 16 N -0.360 5.360 17 C -0.445 4.445 18 H 0.061 0.939 19 C -0.276 4.276 20 N -0.607 5.607 21 Si 0.944 3.056 22 H -0.241 1.241 23 H -0.168 1.168 24 H -0.206 1.206 25 C -0.009 4.009 26 C -0.184 4.184 27 C -0.031 4.031 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.133 0.867 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.056 0.944 46 H 0.180 0.820 47 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -14.693 -26.154 -10.457 31.769 hybrid contribution -1.607 0.898 1.641 2.466 sum -16.300 -25.257 -8.816 31.326 Atomic orbital electron populations 1.21806 0.96210 1.02000 1.01468 1.21520 0.95752 0.95270 1.03177 1.21425 0.94103 0.97746 1.01765 1.22135 0.97065 0.93313 1.07136 1.22921 0.87255 0.92431 0.69251 1.90525 1.59228 1.49480 1.39159 1.20600 0.95808 0.94058 1.12525 1.21112 0.94545 0.97282 0.92319 1.21228 0.94176 0.99344 1.10650 1.19784 0.82421 0.95060 0.92142 1.86036 1.20376 1.27941 1.86553 1.23622 0.97806 0.79950 0.96452 0.88710 1.22634 0.93049 0.96415 1.02281 1.22406 0.95544 0.97068 0.89017 1.44698 1.41473 1.20420 1.29425 1.20055 1.11278 0.99630 1.13522 0.93873 1.27302 1.02805 0.92893 1.04622 1.71033 1.38149 1.20192 1.31301 0.83342 0.72650 0.73249 0.76356 1.24139 1.16764 1.20590 1.22069 0.93089 0.89824 0.95920 1.20668 0.97001 0.93674 1.07033 1.21509 0.90642 1.00059 0.90909 0.93221 0.91783 0.93350 0.90628 0.90810 0.93219 0.93006 0.85375 0.85653 0.86044 0.85788 0.86677 0.88533 0.92976 0.93924 0.94560 0.94959 0.94437 0.81986 0.79863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.91 71.98 0.71 -0.82 16 2 C -0.12 -1.01 5.93 30.59 0.18 -0.83 16 3 C -0.11 -1.46 4.50 30.59 0.14 -1.32 16 4 C -0.16 -1.59 4.30 29.85 0.13 -1.46 16 5 C 0.40 7.78 7.11 27.94 0.20 7.98 16 6 O -0.50 -14.13 15.97 -3.09 -0.05 -14.18 16 7 C -0.23 -4.57 5.87 -20.15 -0.12 -4.69 16 8 C -0.03 -0.87 9.57 22.44 0.21 -0.65 16 9 C -0.24 -6.29 8.91 22.21 0.20 -6.09 16 10 C 0.15 3.76 6.69 22.67 0.15 3.91 16 11 O -0.30 -8.12 9.93 -89.76 -0.89 -9.01 16 12 C 0.08 2.43 2.81 32.06 0.09 2.52 16 13 H 0.10 2.82 6.19 -2.39 -0.01 2.80 16 14 C -0.11 -3.06 6.68 31.78 0.21 -2.85 16 15 C 0.08 3.32 4.65 86.73 0.40 3.72 16 16 N -0.63 -30.66 3.36 -691.56 -2.32 -32.98 16 17 C -0.32 -18.71 10.60 84.04 0.89 -17.82 16 18 H 0.04 2.78 8.06 -2.91 -0.02 2.76 16 19 C -0.08 -5.06 5.50 84.86 0.47 -4.60 16 20 N -0.96 -62.75 13.70 21.65 0.30 -62.45 16 21 Si 1.12 52.86 24.50 68.60 1.68 54.54 16 22 H -0.31 -15.28 7.11 99.48 0.71 -14.57 16 23 H -0.24 -9.83 5.45 99.48 0.54 -9.29 16 24 H -0.28 -12.22 6.47 99.48 0.64 -11.57 16 25 C 0.12 4.69 6.88 86.93 0.60 5.29 16 26 C -0.17 -2.88 9.95 22.21 0.22 -2.66 16 27 C -0.01 -0.19 9.44 22.44 0.21 0.03 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 34 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 35 H 0.13 0.59 8.08 -2.39 -0.02 0.57 16 36 H 0.13 0.65 8.08 -2.39 -0.02 0.64 16 37 H 0.12 3.27 7.64 -2.91 -0.02 3.25 16 38 H 0.12 3.61 5.66 -2.91 -0.02 3.59 16 39 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 41 H 0.05 2.11 6.14 -2.39 -0.01 2.10 16 42 H 0.04 1.76 3.97 -2.39 -0.01 1.75 16 43 H 0.25 16.15 8.73 -92.70 -0.81 15.34 16 44 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 45 H 0.04 1.56 7.85 -2.39 -0.02 1.54 16 46 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 47 H 0.18 0.75 7.04 -2.91 -0.02 0.73 16 Total: -1.00 -76.80 372.62 4.30 -72.50 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.69 Total: 11.95 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 4.90 Total: -20.36 kcal Atomic # 7 Polarization: -93.40 SS G_CDS: -2.03 Total: -95.43 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.94 Total: -23.20 kcal Atomic # 14 Polarization: 52.86 SS G_CDS: 1.68 Total: 54.54 kcal Total: -76.80 4.30 -72.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226771845.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.485 kcal (2) G-P(sol) polarization free energy of solvation -76.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds