Wall clock time and date at job start Tue Mar 31 2020 12:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47051 * 2 1 4 4 C 1.52993 * 109.47376 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.47602 * 179.97438 * 4 3 2 6 6 O 1.21292 * 119.99535 * 0.02562 * 5 4 3 7 7 C 1.46851 * 120.00135 * 179.97438 * 5 4 3 8 8 C 1.40045 * 120.11162 * 180.02562 * 7 5 4 9 9 C 1.37119 * 119.87875 * 180.02562 * 8 7 5 10 10 C 1.39079 * 120.12022 * 0.02562 * 9 8 7 11 11 O 1.35665 * 119.88567 * 179.97438 * 10 9 8 12 12 C 1.42895 * 116.99844 * 185.74892 * 11 10 9 13 13 C 1.53510 * 114.17001 * 156.82685 * 12 11 10 14 14 N 1.47471 * 87.93465 * 87.81476 * 13 12 11 15 15 C 1.46901 * 111.00255 * 138.70515 * 14 13 12 16 16 C 1.50701 * 109.47233 * 169.99913 * 15 14 13 17 17 H 1.08006 * 119.99797 * 0.02562 * 16 15 14 18 18 C 1.37868 * 119.99801 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00658 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99963 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47339 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.47074 * 299.99819 * 20 18 16 23 23 H 1.48501 * 109.47295 * 59.99430 * 20 18 16 24 24 C 1.47482 * 87.83530 * 27.01031 * 14 13 12 25 25 C 1.39080 * 120.22582 * 0.25132 * 10 9 8 26 26 C 1.37115 * 120.11941 * 359.45350 * 25 10 9 27 27 H 1.08997 * 109.47524 * 300.00309 * 1 2 3 28 28 H 1.09001 * 109.46864 * 60.00233 * 1 2 3 29 29 H 1.08999 * 109.47127 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47042 * 239.99860 * 2 1 3 31 31 H 1.09001 * 109.46864 * 119.99767 * 2 1 3 32 32 H 1.09006 * 109.47366 * 59.99605 * 3 2 1 33 33 H 1.09003 * 109.47323 * 300.00360 * 3 2 1 34 34 H 1.09006 * 109.47012 * 59.99613 * 4 3 2 35 35 H 1.09003 * 109.47373 * 300.00555 * 4 3 2 36 36 H 1.07991 * 120.05841 * 0.02562 * 8 7 5 37 37 H 1.08001 * 119.94058 * 180.02562 * 9 8 7 38 38 H 1.09008 * 113.25600 * 23.87812 * 12 11 10 39 39 H 1.09000 * 113.47265 * 333.04226 * 13 12 11 40 40 H 1.09004 * 113.47695 * 202.58325 * 13 12 11 41 41 H 1.08999 * 109.46724 * 49.99935 * 15 14 13 42 42 H 1.08998 * 109.46974 * 289.99980 * 15 14 13 43 43 H 0.96994 * 120.00492 * 180.02562 * 19 18 16 44 44 H 1.08998 * 113.47181 * 87.75825 * 24 14 13 45 45 H 1.09005 * 113.47592 * 218.22147 * 24 14 13 46 46 H 1.08001 * 119.93823 * 179.71971 * 25 10 9 47 47 H 1.07997 * 120.05982 * 180.27359 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0723 2.8634 0.0000 6 8 3.2841 3.7853 -0.0004 7 6 5.5161 3.1318 0.0010 8 6 5.9855 4.4512 0.0010 9 6 7.3346 4.6963 0.0014 10 6 8.2363 3.6374 0.0013 11 8 9.5701 3.8853 0.0012 12 6 10.4394 2.7584 -0.1264 13 6 11.8332 3.0984 -0.6724 14 7 12.2551 3.3592 0.7164 15 6 13.5984 2.8207 0.9685 16 6 14.0946 3.3131 2.3036 17 1 13.4740 3.9610 2.9049 18 6 15.3409 2.9366 2.7574 19 7 16.0965 2.1472 2.0255 20 14 15.9557 3.5464 4.4126 21 1 17.3141 3.0031 4.6668 22 1 16.0103 5.0304 4.4042 23 1 15.0317 3.0911 5.4822 24 6 11.2145 2.4091 1.1518 25 6 7.7753 2.3252 -0.0044 26 6 6.4283 2.0692 0.0012 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9288 0.8908 36 1 5.2862 5.2741 0.0006 37 1 7.6977 5.7134 0.0018 38 1 9.9671 1.9031 -0.6098 39 1 11.8472 3.9863 -1.3045 40 1 12.3405 2.2479 -1.1279 41 1 14.2768 3.1542 0.1832 42 1 13.5578 1.7315 0.9752 43 1 16.9731 1.8821 2.3449 44 1 11.5567 1.3747 1.1831 45 1 10.7042 2.7129 2.0658 46 1 8.4796 1.5065 -0.0090 47 1 6.0714 1.0499 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226772121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:38 Heat of formation + Delta-G solvation = -22.814684 kcal Electronic energy + Delta-G solvation = -24995.130592 eV Core-core repulsion = 21337.221553 eV Total energy + Delta-G solvation = -3657.909039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.77762 -39.92984 -38.60548 -36.61033 -35.70871 -32.93483 -31.92696 -31.01010 -30.13081 -29.20128 -25.88538 -25.59829 -25.16670 -23.35235 -23.06037 -21.66268 -21.29904 -20.00803 -19.53951 -18.20750 -16.74417 -16.40830 -16.26376 -16.19434 -15.62673 -15.20140 -15.03092 -14.74716 -14.57237 -14.39300 -14.14075 -13.82976 -13.62275 -13.50702 -13.12896 -13.05571 -12.79063 -12.56263 -12.35237 -12.02975 -11.79105 -11.69115 -11.59866 -11.49811 -11.39233 -10.99209 -10.95733 -10.90273 -10.56711 -10.41759 -10.18184 -9.85642 -9.74875 -9.34013 -9.32375 -8.48169 -8.32732 -7.95133 -6.08402 -4.09792 0.54836 1.16876 2.24753 3.02519 3.31455 3.35005 3.38940 3.60543 3.74973 4.38157 4.42802 4.50203 4.56330 4.58552 4.60133 4.68926 4.69975 4.93304 4.93486 5.03036 5.09590 5.12798 5.20518 5.26931 5.32024 5.42311 5.43811 5.51522 5.57213 5.64500 5.75048 5.75651 5.78061 5.87260 5.93447 5.97938 6.02002 6.05370 6.12058 6.18592 6.22406 6.50565 6.53995 7.05481 7.35687 7.38035 7.57100 7.78562 8.02702 8.38489 8.97582 9.54734 11.02572 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023936 B = 0.001912 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.520478 B =14643.435933 C =14918.114579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.112 4.112 4 C -0.168 4.168 5 C 0.402 3.598 6 O -0.463 6.463 7 C -0.227 4.227 8 C -0.019 4.019 9 C -0.170 4.170 10 C 0.177 3.823 11 O -0.269 6.269 12 C 0.040 3.960 13 C 0.001 3.999 14 N -0.456 5.456 15 C 0.156 3.844 16 C -0.506 4.506 17 H 0.063 0.937 18 C 0.055 3.945 19 N -0.900 5.900 20 Si 0.900 3.100 21 H -0.287 1.287 22 H -0.275 1.275 23 H -0.277 1.277 24 C -0.005 4.005 25 C -0.228 4.228 26 C -0.028 4.028 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.031 0.969 42 H 0.004 0.996 43 H 0.262 0.738 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.139 0.861 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.871 -5.157 -7.150 27.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.149 4.149 4 C -0.205 4.205 5 C 0.281 3.719 6 O -0.340 6.340 7 C -0.228 4.228 8 C -0.037 4.037 9 C -0.189 4.189 10 C 0.129 3.871 11 O -0.180 6.180 12 C -0.017 4.017 13 C -0.128 4.128 14 N -0.179 5.179 15 C 0.030 3.970 16 C -0.545 4.545 17 H 0.081 0.919 18 C -0.146 4.146 19 N -0.540 5.540 20 Si 0.728 3.272 21 H -0.213 1.213 22 H -0.201 1.201 23 H -0.202 1.202 24 C -0.134 4.134 25 C -0.246 4.246 26 C -0.046 4.046 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.049 0.951 42 H 0.022 0.978 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.156 0.844 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -25.906 -3.896 -6.854 27.079 hybrid contribution 0.859 -0.918 0.628 1.406 sum -25.047 -4.814 -6.226 26.254 Atomic orbital electron populations 1.21768 0.95770 1.01560 1.01969 1.21549 0.96097 0.96581 1.02076 1.21441 0.93357 0.96789 1.03329 1.22071 0.97784 0.96029 1.04623 1.22306 0.87816 0.90961 0.70819 1.90512 1.58426 1.47774 1.37283 1.20312 0.94765 0.94304 1.13414 1.21055 0.94573 0.96233 0.91834 1.20344 0.91629 0.98784 1.08123 1.19561 0.83940 0.93454 0.90096 1.86173 1.12527 1.34250 1.85059 1.23831 0.90076 0.87766 1.00011 1.24008 0.91003 1.01730 0.96105 1.69110 1.05160 1.40293 1.03367 1.20308 0.84851 0.93645 0.98171 1.21053 1.01041 1.29625 1.02782 0.91854 1.24997 0.96664 0.95190 0.97786 1.69935 1.10804 1.35403 1.37869 0.86520 0.77689 0.79245 0.83741 1.21307 1.20094 1.20236 1.24249 0.94437 0.97274 0.97472 1.21206 0.96939 0.96174 1.10312 1.21063 0.92110 0.98566 0.92860 0.92683 0.92713 0.92769 0.91944 0.91909 0.91376 0.91399 0.88409 0.88345 0.84483 0.84419 0.89304 0.89581 0.90242 0.95106 0.97789 0.92814 0.90386 0.89880 0.84386 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.13 -0.70 5.93 -26.73 -0.16 -0.86 16 3 C -0.11 -0.79 4.50 -26.73 -0.12 -0.91 16 4 C -0.17 -1.11 4.30 -27.88 -0.12 -1.23 16 5 C 0.40 4.00 7.11 -30.82 -0.22 3.78 16 6 O -0.46 -5.96 15.97 5.55 0.09 -5.87 16 7 C -0.23 -2.34 5.87 -105.06 -0.62 -2.96 16 8 C -0.02 -0.21 9.57 -39.31 -0.38 -0.58 16 9 C -0.17 -2.03 9.95 -39.68 -0.39 -2.42 16 10 C 0.18 2.29 6.69 -38.96 -0.26 2.03 16 11 O -0.27 -4.12 10.18 -18.70 -0.19 -4.31 16 12 C 0.04 0.58 4.05 -26.20 -0.11 0.47 16 13 C 0.00 0.01 7.52 -7.56 -0.06 -0.04 16 14 N -0.46 -9.76 6.32 -246.15 -1.55 -11.31 16 15 C 0.16 3.99 4.57 -4.97 -0.02 3.96 16 16 C -0.51 -14.37 9.39 -34.44 -0.32 -14.69 16 17 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 18 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.45 13.29 55.43 0.74 -25.72 16 20 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.00 -0.08 7.56 -7.56 -0.06 -0.14 16 25 C -0.23 -2.43 8.98 -39.68 -0.36 -2.79 16 26 C -0.03 -0.25 9.44 -39.31 -0.37 -0.62 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 33 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 34 H 0.10 0.49 8.08 -51.93 -0.42 0.07 16 35 H 0.10 0.52 8.08 -51.93 -0.42 0.10 16 36 H 0.14 1.41 7.64 -52.49 -0.40 1.01 16 37 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.09 1.00 5.88 -51.92 -0.31 0.70 16 39 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.23 7.91 -51.93 -0.41 0.82 16 41 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 42 H 0.00 0.11 7.30 -51.93 -0.38 -0.27 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.08 1.32 7.42 -51.93 -0.39 0.94 16 45 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 46 H 0.14 1.29 5.86 -52.49 -0.31 0.98 16 47 H 0.13 0.78 7.04 -52.49 -0.37 0.41 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -32.18 388.07 -10.97 -43.14 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -7.59 Total: -2.44 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -3.29 Total: -16.04 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.82 Total: -37.03 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -0.10 Total: -10.18 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.18 -10.97 -43.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226772121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.328 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds