Wall clock time and date at job start Tue Mar 31 2020 12:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47051 * 2 1 4 4 C 1.52993 * 109.47376 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.47602 * 179.97438 * 4 3 2 6 6 O 1.21292 * 119.99535 * 0.02562 * 5 4 3 7 7 C 1.46851 * 120.00135 * 179.97438 * 5 4 3 8 8 C 1.40045 * 120.11162 * 180.02562 * 7 5 4 9 9 C 1.37119 * 119.87875 * 180.02562 * 8 7 5 10 10 C 1.39079 * 120.12022 * 0.02562 * 9 8 7 11 11 O 1.35665 * 119.88567 * 179.97438 * 10 9 8 12 12 C 1.42895 * 116.99844 * 185.74892 * 11 10 9 13 13 C 1.53510 * 114.17001 * 156.82685 * 12 11 10 14 14 N 1.47471 * 87.93465 * 87.81476 * 13 12 11 15 15 C 1.46901 * 111.00255 * 138.70515 * 14 13 12 16 16 C 1.50701 * 109.47233 * 169.99913 * 15 14 13 17 17 H 1.08006 * 119.99797 * 0.02562 * 16 15 14 18 18 C 1.37868 * 119.99801 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00658 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99963 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47339 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.47074 * 299.99819 * 20 18 16 23 23 H 1.48501 * 109.47295 * 59.99430 * 20 18 16 24 24 C 1.47482 * 87.83530 * 27.01031 * 14 13 12 25 25 C 1.39080 * 120.22582 * 0.25132 * 10 9 8 26 26 C 1.37115 * 120.11941 * 359.45350 * 25 10 9 27 27 H 1.08997 * 109.47524 * 300.00309 * 1 2 3 28 28 H 1.09001 * 109.46864 * 60.00233 * 1 2 3 29 29 H 1.08999 * 109.47127 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47042 * 239.99860 * 2 1 3 31 31 H 1.09001 * 109.46864 * 119.99767 * 2 1 3 32 32 H 1.09006 * 109.47366 * 59.99605 * 3 2 1 33 33 H 1.09003 * 109.47323 * 300.00360 * 3 2 1 34 34 H 1.09006 * 109.47012 * 59.99613 * 4 3 2 35 35 H 1.09003 * 109.47373 * 300.00555 * 4 3 2 36 36 H 1.07991 * 120.05841 * 0.02562 * 8 7 5 37 37 H 1.08001 * 119.94058 * 180.02562 * 9 8 7 38 38 H 1.09008 * 113.25600 * 23.87812 * 12 11 10 39 39 H 1.09000 * 113.47265 * 333.04226 * 13 12 11 40 40 H 1.09004 * 113.47695 * 202.58325 * 13 12 11 41 41 H 1.08999 * 109.46724 * 49.99935 * 15 14 13 42 42 H 1.08998 * 109.46974 * 289.99980 * 15 14 13 43 43 H 0.96994 * 120.00492 * 180.02562 * 19 18 16 44 44 H 1.08998 * 113.47181 * 87.75825 * 24 14 13 45 45 H 1.09005 * 113.47592 * 218.22147 * 24 14 13 46 46 H 1.08001 * 119.93823 * 179.71971 * 25 10 9 47 47 H 1.07997 * 120.05982 * 180.27359 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0723 2.8634 0.0000 6 8 3.2841 3.7853 -0.0004 7 6 5.5161 3.1318 0.0010 8 6 5.9855 4.4512 0.0010 9 6 7.3346 4.6963 0.0014 10 6 8.2363 3.6374 0.0013 11 8 9.5701 3.8853 0.0012 12 6 10.4394 2.7584 -0.1264 13 6 11.8332 3.0984 -0.6724 14 7 12.2551 3.3592 0.7164 15 6 13.5984 2.8207 0.9685 16 6 14.0946 3.3131 2.3036 17 1 13.4740 3.9610 2.9049 18 6 15.3409 2.9366 2.7574 19 7 16.0965 2.1472 2.0255 20 14 15.9557 3.5464 4.4126 21 1 17.3141 3.0031 4.6668 22 1 16.0103 5.0304 4.4042 23 1 15.0317 3.0911 5.4822 24 6 11.2145 2.4091 1.1518 25 6 7.7753 2.3252 -0.0044 26 6 6.4283 2.0692 0.0012 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9337 0.9286 -0.8891 35 1 3.9330 0.9288 0.8908 36 1 5.2862 5.2741 0.0006 37 1 7.6977 5.7134 0.0018 38 1 9.9671 1.9031 -0.6098 39 1 11.8472 3.9863 -1.3045 40 1 12.3405 2.2479 -1.1279 41 1 14.2768 3.1542 0.1832 42 1 13.5578 1.7315 0.9752 43 1 16.9731 1.8821 2.3449 44 1 11.5567 1.3747 1.1831 45 1 10.7042 2.7129 2.0658 46 1 8.4796 1.5065 -0.0090 47 1 6.0714 1.0499 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226772121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:38 Heat of formation + Delta-G solvation = -42.431750 kcal Electronic energy + Delta-G solvation = -24995.981252 eV Core-core repulsion = 21337.221553 eV Total energy + Delta-G solvation = -3658.759699 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.85117 -40.90125 -39.69410 -37.67316 -36.23166 -35.02615 -32.71478 -31.78131 -31.32541 -30.46521 -27.46715 -26.89561 -26.12846 -24.30883 -24.09934 -23.06545 -21.94388 -20.98939 -20.47336 -19.24760 -18.54758 -17.55949 -17.28487 -16.98699 -16.81123 -16.45723 -16.13692 -15.92938 -15.54819 -15.40262 -15.16386 -15.03649 -14.64182 -14.46063 -14.25179 -13.86457 -13.77313 -13.61935 -13.49620 -13.19314 -13.13624 -13.00879 -12.72247 -12.40734 -12.28255 -12.15989 -12.06833 -11.89615 -11.82470 -11.53355 -11.43555 -11.41081 -11.26488 -10.62834 -10.62363 -10.13875 -9.60519 -9.26265 -8.24535 -6.34410 -0.29085 0.35554 1.38662 1.41406 1.44686 1.49734 1.96975 2.37974 2.77276 3.06314 3.07561 3.28087 3.31699 3.69931 3.74869 3.95736 3.98077 4.06019 4.09975 4.19654 4.31990 4.42884 4.44069 4.45145 4.51327 4.52750 4.60811 4.65304 4.71287 4.80209 4.87187 4.93164 4.97686 4.99922 5.02640 5.04361 5.14333 5.19971 5.26667 5.29755 5.41218 5.41767 5.52382 5.56169 5.67704 5.77337 6.06213 6.37360 6.45519 6.61424 6.79124 7.35144 8.85888 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023936 B = 0.001912 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.520478 B =14643.435933 C =14918.114579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.121 4.121 3 C -0.111 4.111 4 C -0.163 4.163 5 C 0.402 3.598 6 O -0.501 6.501 7 C -0.231 4.231 8 C -0.029 4.029 9 C -0.181 4.181 10 C 0.152 3.848 11 O -0.295 6.295 12 C 0.068 3.932 13 C -0.002 4.002 14 N -0.490 5.490 15 C 0.172 3.828 16 C -0.531 4.531 17 H 0.053 0.947 18 C 0.006 3.994 19 N -0.930 5.930 20 Si 0.967 3.033 21 H -0.278 1.278 22 H -0.272 1.272 23 H -0.268 1.268 24 C -0.008 4.008 25 C -0.226 4.226 26 C -0.014 4.014 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.003 0.997 42 H -0.009 1.009 43 H 0.266 0.734 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.157 0.843 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.113 -7.210 -7.017 28.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.159 4.159 3 C -0.149 4.149 4 C -0.199 4.199 5 C 0.284 3.716 6 O -0.380 6.380 7 C -0.232 4.232 8 C -0.047 4.047 9 C -0.199 4.199 10 C 0.106 3.894 11 O -0.207 6.207 12 C 0.012 3.988 13 C -0.131 4.131 14 N -0.213 5.213 15 C 0.045 3.955 16 C -0.569 4.569 17 H 0.071 0.929 18 C -0.193 4.193 19 N -0.570 5.570 20 Si 0.791 3.209 21 H -0.203 1.203 22 H -0.198 1.198 23 H -0.193 1.193 24 C -0.138 4.138 25 C -0.245 4.245 26 C -0.032 4.032 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.021 0.979 42 H 0.009 0.991 43 H 0.075 0.925 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.175 0.825 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -27.170 -5.951 -6.729 28.617 hybrid contribution 1.125 -0.244 0.550 1.276 sum -26.045 -6.196 -6.180 27.476 Atomic orbital electron populations 1.21799 0.96088 1.01964 1.01559 1.21528 0.95855 0.95464 1.03022 1.21412 0.93955 0.97594 1.01911 1.22136 0.97193 0.93745 1.06854 1.22805 0.87289 0.92208 0.69307 1.90511 1.59124 1.49250 1.39116 1.20576 0.95553 0.94331 1.12770 1.21148 0.94212 0.97162 0.92210 1.20405 0.92008 0.98869 1.08649 1.19781 0.82916 0.94829 0.91896 1.86132 1.13871 1.34852 1.85839 1.23586 0.89321 0.88678 0.97255 1.24088 0.92693 1.02460 0.93871 1.69003 1.03631 1.41682 1.06988 1.19965 0.86926 0.92552 0.96054 1.21387 1.01556 1.29828 1.04116 0.92907 1.25853 0.96731 0.95175 1.01524 1.70038 1.11169 1.36238 1.39573 0.85481 0.77458 0.78694 0.79257 1.20342 1.19763 1.19308 1.24290 0.93806 0.96819 0.98847 1.21444 0.98057 0.95454 1.09498 1.21442 0.91049 1.00032 0.90655 0.93213 0.93109 0.91933 0.90838 0.91000 0.92993 0.92813 0.85775 0.86007 0.84612 0.84745 0.84961 0.89508 0.88831 0.97886 0.99117 0.92521 0.89634 0.90829 0.82538 0.80902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.91 71.98 0.71 -0.77 16 2 C -0.12 -1.03 5.93 30.60 0.18 -0.85 16 3 C -0.11 -1.37 4.50 30.59 0.14 -1.23 16 4 C -0.16 -1.60 4.30 29.85 0.13 -1.47 16 5 C 0.40 7.24 7.11 27.94 0.20 7.44 16 6 O -0.50 -12.73 15.97 -3.07 -0.05 -12.78 16 7 C -0.23 -4.28 5.87 -20.15 -0.12 -4.40 16 8 C -0.03 -0.63 9.57 22.45 0.21 -0.42 16 9 C -0.18 -4.29 9.95 22.21 0.22 -4.06 16 10 C 0.15 3.72 6.69 22.67 0.15 3.87 16 11 O -0.29 -8.77 10.18 -89.82 -0.91 -9.68 16 12 C 0.07 1.84 4.05 30.94 0.13 1.97 16 13 C 0.00 -0.07 7.52 83.57 0.63 0.56 16 14 N -0.49 -21.24 6.32 -933.05 -5.89 -27.13 16 15 C 0.17 9.02 4.57 85.56 0.39 9.41 16 16 C -0.53 -30.74 9.39 25.60 0.24 -30.50 16 17 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 18 C 0.01 0.32 5.46 84.65 0.46 0.79 16 19 N -0.93 -55.23 13.29 21.44 0.28 -54.94 16 20 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 C -0.01 -0.29 7.56 83.57 0.63 0.35 16 25 C -0.23 -4.08 8.98 22.21 0.20 -3.88 16 26 C -0.01 -0.20 9.44 22.44 0.21 0.01 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.80 8.10 -2.38 -0.02 0.78 16 33 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 34 H 0.12 0.64 8.08 -2.38 -0.02 0.62 16 35 H 0.12 0.71 8.08 -2.39 -0.02 0.69 16 36 H 0.14 2.89 7.64 -2.92 -0.02 2.87 16 37 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 38 H 0.13 2.46 5.88 -2.38 -0.01 2.44 16 39 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 40 H 0.09 2.80 7.91 -2.38 -0.02 2.78 16 41 H 0.00 0.17 8.08 -2.39 -0.02 0.15 16 42 H -0.01 -0.48 7.30 -2.39 -0.02 -0.50 16 43 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 44 H 0.09 2.82 7.42 -2.39 -0.02 2.80 16 45 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 46 H 0.16 2.20 5.86 -2.91 -0.02 2.18 16 47 H 0.17 1.01 7.04 -2.91 -0.02 0.99 16 Total: -1.00 -72.11 388.07 1.12 -70.99 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.94 Total: 10.09 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 4.72 Total: -23.20 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -5.61 Total: -82.07 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.96 Total: -22.46 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -72.11 1.12 -70.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226772121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.560 kcal (2) G-P(sol) polarization free energy of solvation -72.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds