Wall clock time and date at job start Tue Mar 31 2020 12:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46896 * 2 1 4 4 C 1.52995 * 109.47121 * 120.00238 * 2 1 3 5 5 H 1.08997 * 109.43269 * 308.31423 * 4 2 1 6 6 C 1.54866 * 109.44802 * 188.37611 * 4 2 1 7 7 C 1.47100 * 110.32118 * 168.69450 * 6 4 2 8 8 C 1.52564 * 114.32468 * 62.80177 * 7 6 4 9 9 C 1.50875 * 109.36220 * 274.98660 * 8 7 6 10 10 C 1.54303 * 110.23770 * 91.79873 * 9 8 7 11 11 N 1.44580 * 109.44943 * 68.24884 * 4 2 1 12 12 S 1.65595 * 118.64592 * 30.74067 * 11 4 2 13 13 O 1.42101 * 104.27767 * 314.62081 * 12 11 4 14 14 O 1.42097 * 104.28077 * 186.76369 * 12 11 4 15 15 C 1.81402 * 104.44817 * 70.69207 * 12 11 4 16 16 C 1.53001 * 109.47083 * 179.97438 * 15 12 11 17 17 C 1.52998 * 109.47174 * 180.02562 * 16 15 12 18 18 C 1.50703 * 109.47168 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00015 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99978 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00283 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00136 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46924 * 60.00048 * 22 20 18 24 24 H 1.48498 * 109.47465 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46947 * 300.00099 * 22 20 18 26 26 H 1.09007 * 109.46801 * 299.99441 * 1 2 3 27 27 H 1.08996 * 109.47069 * 59.99497 * 1 2 3 28 28 H 1.09000 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46682 * 240.00578 * 2 1 3 30 30 H 1.09003 * 109.46839 * 187.22860 * 3 2 1 31 31 H 1.08995 * 109.47532 * 307.22693 * 3 2 1 32 32 H 1.09004 * 109.46838 * 67.23414 * 3 2 1 33 33 H 1.08993 * 109.33123 * 288.95547 * 6 4 2 34 34 H 1.08998 * 109.32345 * 48.43577 * 6 4 2 35 35 H 1.09002 * 108.50908 * 184.05739 * 7 6 4 36 36 H 1.08999 * 108.51303 * 301.70642 * 7 6 4 37 37 H 1.08998 * 109.49120 * 34.95527 * 8 7 6 38 38 H 1.09002 * 109.48923 * 154.99660 * 8 7 6 39 39 H 1.09002 * 109.37002 * 212.07761 * 9 8 7 40 40 H 1.09005 * 109.36766 * 331.82511 * 9 8 7 41 41 H 1.08989 * 109.14086 * 199.01668 * 10 9 8 42 42 H 1.09000 * 108.95426 * 80.26554 * 10 9 8 43 43 H 1.09004 * 109.46670 * 60.00549 * 15 12 11 44 44 H 1.08989 * 109.47485 * 299.99899 * 15 12 11 45 45 H 1.09007 * 109.46976 * 60.00268 * 16 15 12 46 46 H 1.08999 * 109.47510 * 300.00366 * 16 15 12 47 47 H 1.09004 * 109.46919 * 300.00046 * 17 16 15 48 48 H 1.08997 * 109.47164 * 60.00120 * 17 16 15 49 49 H 0.97000 * 120.00334 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5601 -0.3000 2.1325 6 6 3.5740 -0.5393 1.3595 7 6 4.0480 -0.9866 2.6783 8 6 3.8225 -2.4695 2.9573 9 6 2.4271 -2.6708 3.4946 10 6 1.4477 -2.9656 2.3392 11 7 1.7242 -2.1290 1.1549 12 16 1.6634 -2.8303 -0.3440 13 8 0.9184 -1.9112 -1.1310 14 8 1.1798 -4.1435 -0.0972 15 6 3.3924 -2.8810 -0.8905 16 6 3.4696 -3.5163 -2.2802 17 6 4.9279 -3.5596 -2.7409 18 6 5.0038 -4.1848 -4.1100 19 1 4.1022 -4.5183 -4.6021 20 6 6.2245 -4.3320 -4.7339 21 7 7.3226 -3.9263 -4.1344 22 14 6.3188 -5.1076 -6.4307 23 1 5.5212 -4.3007 -7.3887 24 1 7.7342 -5.1495 -6.8779 25 1 5.7758 -6.4886 -6.3745 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 3.1223 1.4452 -0.1293 31 1 1.5750 1.9923 -0.8182 32 1 1.7861 1.9176 0.9477 33 1 4.0637 -1.1258 0.5822 34 1 3.8230 0.5132 1.2245 35 1 5.1156 -0.7791 2.7509 36 1 3.5315 -0.4099 3.4455 37 1 3.9418 -3.0356 2.0336 38 1 4.5491 -2.8157 3.6924 39 1 2.4257 -3.5084 4.1922 40 1 2.1057 -1.7677 4.0135 41 1 0.4291 -2.7753 2.6769 42 1 1.5359 -4.0153 2.0594 43 1 3.9783 -3.4733 -0.1876 44 1 3.7903 -1.8672 -0.9315 45 1 2.8834 -2.9244 -2.9833 46 1 3.0717 -4.5302 -2.2389 47 1 5.3261 -2.5457 -2.7822 48 1 5.5136 -4.1517 -2.0377 49 1 8.1814 -4.0295 -4.5735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001309351977.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:47 Heat of formation + Delta-G solvation = -75.980596 kcal Electronic energy + Delta-G solvation = -27256.044405 eV Core-core repulsion = 23731.273870 eV Total energy + Delta-G solvation = -3524.770535 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.70235 -37.44776 -35.88767 -35.02919 -34.73245 -33.60816 -32.19435 -31.40715 -27.84653 -27.34177 -25.86473 -25.49686 -23.79109 -21.50785 -20.99330 -20.50023 -20.09850 -18.77031 -17.14941 -16.60006 -16.48258 -15.90659 -15.31962 -15.28091 -14.86683 -14.49086 -14.31174 -14.21503 -13.97766 -13.93881 -13.00595 -12.79538 -12.60898 -12.52222 -12.44365 -12.26040 -12.14803 -11.85456 -11.77643 -11.69831 -11.44780 -11.32299 -11.23866 -11.02536 -10.89783 -10.84022 -10.70089 -10.57318 -10.50856 -10.43725 -10.23029 -9.94389 -9.73671 -9.42729 -9.20325 -8.81771 -8.40318 -6.05472 -4.08618 0.48038 2.75722 3.32095 3.35986 3.39182 3.97948 4.26780 4.35274 4.42657 4.59438 4.68194 4.80647 4.93365 4.94248 5.05666 5.13532 5.14086 5.23623 5.30859 5.36647 5.41883 5.51728 5.59916 5.62643 5.65190 5.77345 5.78785 5.89748 5.94331 5.97179 6.00820 6.05042 6.06732 6.12329 6.19922 6.23142 6.26945 6.28685 6.44276 6.53167 6.62182 6.78836 6.87318 7.56804 7.67043 7.92327 8.32952 8.97323 9.56070 11.05651 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015980 B = 0.003916 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.718133 B = 7148.970427 C = 7363.960640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.136 4.136 3 C -0.146 4.146 4 C 0.159 3.841 5 H 0.085 0.915 6 C -0.156 4.156 7 C -0.113 4.113 8 C -0.119 4.119 9 C -0.128 4.128 10 C 0.118 3.882 11 N -0.987 5.987 12 S 2.584 3.416 13 O -0.944 6.944 14 O -0.966 6.966 15 C -0.614 4.614 16 C -0.104 4.104 17 C 0.032 3.968 18 C -0.527 4.527 19 H 0.057 0.943 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.894 3.106 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.033 0.967 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.094 0.906 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.824 8.507 17.047 21.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.155 4.155 3 C -0.204 4.204 4 C 0.052 3.948 5 H 0.103 0.897 6 C -0.195 4.195 7 C -0.151 4.151 8 C -0.157 4.157 9 C -0.167 4.167 10 C -0.007 4.007 11 N -0.822 5.822 12 S 2.682 3.318 13 O -0.934 6.934 14 O -0.957 6.957 15 C -0.745 4.745 16 C -0.143 4.143 17 C -0.006 4.006 18 C -0.565 4.565 19 H 0.075 0.925 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.721 3.279 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.127 0.873 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.112 0.888 43 H 0.144 0.856 44 H 0.148 0.852 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.039 0.961 48 H 0.038 0.962 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.464 8.225 16.658 21.322 hybrid contribution 0.975 -0.219 -0.674 1.205 sum -9.489 8.006 15.984 20.239 Atomic orbital electron populations 1.21742 0.93971 1.02367 0.99747 1.22262 0.98068 0.96824 0.98351 1.21921 1.01076 0.95800 1.01589 1.21022 0.94203 0.79762 0.99835 0.89693 1.21722 0.96060 1.02911 0.98793 1.20389 1.01133 0.96070 0.97460 1.21085 0.96325 0.96777 1.01463 1.21813 0.95295 1.02248 0.97317 1.21763 0.98364 0.95188 0.85379 1.57167 1.85663 1.16639 1.22778 1.05829 0.78691 0.73443 0.73798 1.93676 1.68084 1.61218 1.70453 1.93521 1.79157 1.39100 1.83885 1.30780 1.23350 1.10664 1.09732 1.21488 1.04237 0.99187 0.89414 1.19044 0.87870 0.97608 0.96096 1.21214 0.93073 1.40213 1.02002 0.92464 1.25006 0.95737 0.95533 0.97991 1.69948 0.98080 1.47165 1.38236 0.86629 0.76973 0.79965 0.84318 1.20113 1.21232 1.20118 0.94829 0.92896 0.91459 0.87302 0.92252 0.92324 0.93055 0.90915 0.89863 0.92311 0.92431 0.91669 0.91828 0.90891 0.91632 0.91827 0.88785 0.85551 0.85208 0.91633 0.91784 0.96147 0.96188 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 7.99 37.16 0.30 -1.20 16 2 C -0.14 -1.59 1.99 -90.62 -0.18 -1.77 16 3 C -0.15 -1.43 8.37 37.16 0.31 -1.12 16 4 C 0.16 1.64 1.62 -67.97 -0.11 1.52 16 5 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 6 C -0.16 -1.51 4.77 -28.58 -0.14 -1.64 16 7 C -0.11 -0.99 5.16 -29.79 -0.15 -1.14 16 8 C -0.12 -1.08 5.51 -28.02 -0.15 -1.23 16 9 C -0.13 -1.03 5.71 -27.12 -0.15 -1.19 16 10 C 0.12 1.19 6.09 -2.75 -0.02 1.17 16 11 N -0.99 -11.40 2.09 -105.98 -0.22 -11.62 16 12 S 2.58 38.66 4.76 -107.50 -0.51 38.15 16 13 O -0.94 -15.42 10.84 -57.54 -0.62 -16.05 16 14 O -0.97 -17.12 16.14 -57.54 -0.93 -18.04 16 15 C -0.61 -9.65 5.02 37.16 0.19 -9.47 16 16 C -0.10 -2.11 5.16 -26.73 -0.14 -2.25 16 17 C 0.03 0.81 4.97 -27.88 -0.14 0.67 16 18 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 22 Si 0.89 21.58 29.54 -169.99 -5.02 16.55 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.93 5.89 -51.93 -0.31 0.63 16 29 H 0.11 1.49 4.76 -53.32 -0.25 1.23 16 30 H 0.06 0.54 6.52 -51.93 -0.34 0.21 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.79 4.86 -51.93 -0.25 0.53 16 34 H 0.08 0.72 5.84 -51.93 -0.30 0.41 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.45 7.35 -51.93 -0.38 0.06 16 37 H 0.06 0.67 6.98 -51.93 -0.36 0.31 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.48 7.31 -51.93 -0.38 0.10 16 41 H 0.06 0.58 8.14 -51.94 -0.42 0.15 16 42 H 0.09 1.04 6.63 -51.93 -0.34 0.70 16 43 H 0.13 1.83 7.63 -51.92 -0.40 1.43 16 44 H 0.13 1.84 5.95 -51.93 -0.31 1.53 16 45 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 46 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 366.41 15.07 5.52 5.52 Total: -1.00 -32.30 366.41 -10.51 -42.80 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -8.66 Total: -0.33 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: -0.80 Total: -31.20 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.52 Total: -37.41 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -1.55 Total: -34.09 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 38.66 SS G_CDS: -0.51 Total: 38.15 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.30 -10.51 -42.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309351977.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.177 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds