Wall clock time and date at job start Tue Mar 31 2020 12:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46896 * 2 1 4 4 C 1.52995 * 109.47121 * 120.00238 * 2 1 3 5 5 H 1.08997 * 109.43269 * 308.31423 * 4 2 1 6 6 C 1.54866 * 109.44802 * 188.37611 * 4 2 1 7 7 C 1.47100 * 110.32118 * 168.69450 * 6 4 2 8 8 C 1.52564 * 114.32468 * 62.80177 * 7 6 4 9 9 C 1.50875 * 109.36220 * 274.98660 * 8 7 6 10 10 C 1.54303 * 110.23770 * 91.79873 * 9 8 7 11 11 N 1.44580 * 109.44943 * 68.24884 * 4 2 1 12 12 S 1.65595 * 118.64592 * 30.74067 * 11 4 2 13 13 O 1.42101 * 104.27767 * 314.62081 * 12 11 4 14 14 O 1.42097 * 104.28077 * 186.76369 * 12 11 4 15 15 C 1.81402 * 104.44817 * 70.69207 * 12 11 4 16 16 C 1.53001 * 109.47083 * 179.97438 * 15 12 11 17 17 C 1.52998 * 109.47174 * 180.02562 * 16 15 12 18 18 C 1.50703 * 109.47168 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00015 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99978 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00283 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00136 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46924 * 60.00048 * 22 20 18 24 24 H 1.48498 * 109.47465 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46947 * 300.00099 * 22 20 18 26 26 H 1.09007 * 109.46801 * 299.99441 * 1 2 3 27 27 H 1.08996 * 109.47069 * 59.99497 * 1 2 3 28 28 H 1.09000 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46682 * 240.00578 * 2 1 3 30 30 H 1.09003 * 109.46839 * 187.22860 * 3 2 1 31 31 H 1.08995 * 109.47532 * 307.22693 * 3 2 1 32 32 H 1.09004 * 109.46838 * 67.23414 * 3 2 1 33 33 H 1.08993 * 109.33123 * 288.95547 * 6 4 2 34 34 H 1.08998 * 109.32345 * 48.43577 * 6 4 2 35 35 H 1.09002 * 108.50908 * 184.05739 * 7 6 4 36 36 H 1.08999 * 108.51303 * 301.70642 * 7 6 4 37 37 H 1.08998 * 109.49120 * 34.95527 * 8 7 6 38 38 H 1.09002 * 109.48923 * 154.99660 * 8 7 6 39 39 H 1.09002 * 109.37002 * 212.07761 * 9 8 7 40 40 H 1.09005 * 109.36766 * 331.82511 * 9 8 7 41 41 H 1.08989 * 109.14086 * 199.01668 * 10 9 8 42 42 H 1.09000 * 108.95426 * 80.26554 * 10 9 8 43 43 H 1.09004 * 109.46670 * 60.00549 * 15 12 11 44 44 H 1.08989 * 109.47485 * 299.99899 * 15 12 11 45 45 H 1.09007 * 109.46976 * 60.00268 * 16 15 12 46 46 H 1.08999 * 109.47510 * 300.00366 * 16 15 12 47 47 H 1.09004 * 109.46919 * 300.00046 * 17 16 15 48 48 H 1.08997 * 109.47164 * 60.00120 * 17 16 15 49 49 H 0.97000 * 120.00334 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5601 -0.3000 2.1325 6 6 3.5740 -0.5393 1.3595 7 6 4.0480 -0.9866 2.6783 8 6 3.8225 -2.4695 2.9573 9 6 2.4271 -2.6708 3.4946 10 6 1.4477 -2.9656 2.3392 11 7 1.7242 -2.1290 1.1549 12 16 1.6634 -2.8303 -0.3440 13 8 0.9184 -1.9112 -1.1310 14 8 1.1798 -4.1435 -0.0972 15 6 3.3924 -2.8810 -0.8905 16 6 3.4696 -3.5163 -2.2802 17 6 4.9279 -3.5596 -2.7409 18 6 5.0038 -4.1848 -4.1100 19 1 4.1022 -4.5183 -4.6021 20 6 6.2245 -4.3320 -4.7339 21 7 7.3226 -3.9263 -4.1344 22 14 6.3188 -5.1076 -6.4307 23 1 5.5212 -4.3007 -7.3887 24 1 7.7342 -5.1495 -6.8779 25 1 5.7758 -6.4886 -6.3745 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 3.1223 1.4452 -0.1293 31 1 1.5750 1.9923 -0.8182 32 1 1.7861 1.9176 0.9477 33 1 4.0637 -1.1258 0.5822 34 1 3.8230 0.5132 1.2245 35 1 5.1156 -0.7791 2.7509 36 1 3.5315 -0.4099 3.4455 37 1 3.9418 -3.0356 2.0336 38 1 4.5491 -2.8157 3.6924 39 1 2.4257 -3.5084 4.1922 40 1 2.1057 -1.7677 4.0135 41 1 0.4291 -2.7753 2.6769 42 1 1.5359 -4.0153 2.0594 43 1 3.9783 -3.4733 -0.1876 44 1 3.7903 -1.8672 -0.9315 45 1 2.8834 -2.9244 -2.9833 46 1 3.0717 -4.5302 -2.2389 47 1 5.3261 -2.5457 -2.7822 48 1 5.5136 -4.1517 -2.0377 49 1 8.1814 -4.0295 -4.5735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001309351977.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:46 Heat of formation + Delta-G solvation = -94.785101 kcal Electronic energy + Delta-G solvation = -27256.859829 eV Core-core repulsion = 23731.273870 eV Total energy + Delta-G solvation = -3525.585959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.55176 -38.60671 -37.15450 -36.53005 -35.93095 -34.54445 -34.11502 -32.21530 -29.69625 -28.19232 -26.68206 -26.31380 -25.65429 -22.82818 -21.97024 -21.41030 -21.21433 -19.91124 -18.71075 -18.00042 -17.61048 -17.19672 -16.56271 -16.44429 -16.14553 -15.76421 -15.68055 -15.06617 -14.90235 -14.75747 -14.47521 -14.16348 -13.76772 -13.74676 -13.49882 -13.29200 -13.28168 -13.26784 -13.02885 -12.75851 -12.75307 -12.69460 -12.63628 -12.35825 -12.21306 -12.10933 -11.78563 -11.63768 -11.57583 -11.44616 -11.36311 -11.30273 -11.14102 -10.92176 -10.69320 -10.58455 -9.79546 -8.23628 -6.35105 -0.73713 1.39097 1.41723 1.49691 1.68143 2.38824 2.75578 3.09665 3.18604 3.40658 3.72769 3.78990 3.86480 3.94113 4.10414 4.15528 4.21125 4.32157 4.35519 4.39912 4.53202 4.57994 4.66370 4.73377 4.81842 4.87503 4.90115 4.94488 4.97264 5.02557 5.11200 5.13291 5.17052 5.24965 5.32295 5.35580 5.37058 5.41107 5.42384 5.48537 5.56399 5.59668 5.61559 5.67881 5.77243 5.92097 6.17860 6.79776 7.34270 8.87655 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015980 B = 0.003916 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.718133 B = 7148.970427 C = 7363.960640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.142 4.142 3 C -0.144 4.144 4 C 0.160 3.840 5 H 0.110 0.890 6 C -0.157 4.157 7 C -0.113 4.113 8 C -0.125 4.125 9 C -0.120 4.120 10 C 0.109 3.891 11 N -0.975 5.975 12 S 2.604 3.396 13 O -0.958 6.958 14 O -0.995 6.995 15 C -0.616 4.616 16 C -0.101 4.101 17 C 0.035 3.965 18 C -0.554 4.554 19 H 0.059 0.941 20 C 0.005 3.995 21 N -0.929 5.929 22 Si 0.962 3.038 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.268 1.268 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.135 0.865 44 H 0.143 0.857 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.003 0.997 48 H 0.000 1.000 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.402 9.451 18.483 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.162 4.162 3 C -0.201 4.201 4 C 0.054 3.946 5 H 0.128 0.872 6 C -0.195 4.195 7 C -0.150 4.150 8 C -0.163 4.163 9 C -0.159 4.159 10 C -0.015 4.015 11 N -0.813 5.813 12 S 2.701 3.299 13 O -0.948 6.948 14 O -0.985 6.985 15 C -0.745 4.745 16 C -0.141 4.141 17 C -0.004 4.004 18 C -0.592 4.592 19 H 0.077 0.923 20 C -0.193 4.193 21 N -0.569 5.569 22 Si 0.786 3.214 23 H -0.192 1.192 24 H -0.205 1.205 25 H -0.193 1.193 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.153 0.847 44 H 0.161 0.839 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.021 0.979 48 H 0.018 0.982 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.038 9.161 18.083 23.082 hybrid contribution 1.140 -0.472 -1.059 1.626 sum -9.897 8.689 17.024 21.524 Atomic orbital electron populations 1.21729 0.94503 1.01313 1.00372 1.22246 0.97695 0.98144 0.98066 1.21901 1.01250 0.94401 1.02586 1.21158 0.94865 0.78554 1.00000 0.87198 1.21750 0.95272 1.03584 0.98941 1.20388 1.01384 0.95959 0.97276 1.21154 0.97342 0.96916 1.00886 1.21796 0.93883 1.03703 0.96510 1.21999 1.00009 0.94234 0.85211 1.56936 1.85336 1.17228 1.21820 1.05089 0.77643 0.72698 0.74485 1.93686 1.68146 1.61260 1.71702 1.93478 1.79429 1.40998 1.84616 1.30775 1.25464 1.11143 1.07136 1.21274 1.00849 0.99675 0.92259 1.18920 0.90709 0.95803 0.94922 1.21693 0.93472 1.40623 1.03425 0.92259 1.25918 0.95308 0.95918 1.02197 1.70065 0.98652 1.48132 1.40029 0.85548 0.77338 0.79252 0.79249 1.19183 1.20485 1.19264 0.92596 0.93881 0.93295 0.89730 0.91797 0.92807 0.90965 0.92664 0.88450 0.92323 0.90523 0.93629 0.90999 0.89467 0.89862 0.90263 0.90178 0.84697 0.83908 0.91525 0.92116 0.97884 0.98181 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.85 7.99 71.98 0.57 -2.28 16 2 C -0.14 -3.14 1.99 -10.79 -0.02 -3.16 16 3 C -0.14 -2.51 8.37 71.98 0.60 -1.91 16 4 C 0.16 2.94 1.62 45.99 0.07 3.02 16 5 H 0.11 1.57 8.05 -2.39 -0.02 1.55 16 6 C -0.16 -2.71 4.77 29.40 0.14 -2.57 16 7 C -0.11 -1.67 5.16 28.61 0.15 -1.52 16 8 C -0.13 -2.01 5.51 29.76 0.16 -1.85 16 9 C -0.12 -1.59 5.71 30.35 0.17 -1.42 16 10 C 0.11 2.01 6.09 86.61 0.53 2.54 16 11 N -0.98 -21.28 2.09 -489.22 -1.02 -22.31 16 12 S 2.60 78.46 4.76 -56.49 -0.27 78.19 16 13 O -0.96 -31.66 10.84 -127.65 -1.38 -33.04 16 14 O -0.99 -35.71 16.14 -127.65 -2.06 -37.77 16 15 C -0.62 -19.88 5.02 71.98 0.36 -19.52 16 16 C -0.10 -4.27 5.16 30.59 0.16 -4.12 16 17 C 0.03 1.82 4.97 29.85 0.15 1.97 16 18 C -0.55 -31.93 9.11 25.60 0.23 -31.70 16 19 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 20 C 0.01 0.29 5.46 84.65 0.46 0.75 16 21 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 22 Si 0.96 44.43 29.54 68.60 2.03 46.45 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.05 1.32 5.89 -2.39 -0.01 1.31 16 29 H 0.08 2.31 4.76 -26.35 -0.13 2.18 16 30 H 0.06 1.05 6.52 -2.39 -0.02 1.03 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.05 1.15 4.86 -2.39 -0.01 1.14 16 34 H 0.10 1.42 5.84 -2.39 -0.01 1.40 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 0.87 7.35 -2.39 -0.02 0.85 16 37 H 0.04 0.91 6.98 -2.39 -0.02 0.89 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 0.85 7.31 -2.38 -0.02 0.83 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.08 1.72 6.63 -2.39 -0.02 1.70 16 43 H 0.13 4.05 7.63 -2.39 -0.02 4.03 16 44 H 0.14 4.18 5.95 -2.40 -0.01 4.16 16 45 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 46 H 0.06 2.54 8.14 -2.39 -0.02 2.53 16 47 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 48 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 49 H 0.27 15.02 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -70.38 366.41 2.12 -68.26 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.79 Total: 17.72 kcal Atomic # 6 Polarization: -65.51 SS G_CDS: 3.75 Total: -61.76 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -0.74 Total: -78.05 kcal Atomic # 8 Polarization: -67.37 SS G_CDS: -3.44 Total: -70.81 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 78.46 SS G_CDS: -0.27 Total: 78.19 kcal Total: -70.38 2.12 -68.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309351977.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.523 kcal (2) G-P(sol) polarization free energy of solvation -70.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds