Wall clock time and date at job start Tue Mar 31 2020 12:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46810 * 2 1 4 4 C 1.52993 * 109.47340 * 119.99538 * 2 1 3 5 5 H 1.09000 * 109.43322 * 291.98880 * 4 2 1 6 6 C 1.54864 * 109.44734 * 51.92541 * 4 2 1 7 7 C 1.47097 * 110.32283 * 191.30458 * 6 4 2 8 8 C 1.52570 * 114.32713 * 297.19744 * 7 6 4 9 9 C 1.50883 * 109.35955 * 85.00671 * 8 7 6 10 10 C 1.53604 * 109.95618 * 268.02661 * 9 8 7 11 11 N 1.44584 * 109.45172 * 172.05066 * 4 2 1 12 12 S 1.65606 * 118.64139 * 329.21843 * 11 4 2 13 13 O 1.42099 * 104.27368 * 177.38559 * 12 11 4 14 14 O 1.42103 * 104.27736 * 49.52476 * 12 11 4 15 15 C 1.81397 * 104.44643 * 293.45498 * 12 11 4 16 16 C 1.53002 * 109.46941 * 187.69642 * 15 12 11 17 17 C 1.53004 * 109.47252 * 179.97438 * 16 15 12 18 18 C 1.50703 * 109.47295 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99888 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00005 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00217 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99913 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46864 * 90.00070 * 22 20 18 24 24 H 1.48498 * 109.46766 * 209.99688 * 22 20 18 25 25 H 1.48493 * 109.47370 * 330.00121 * 22 20 18 26 26 H 1.09000 * 109.46882 * 299.99696 * 1 2 3 27 27 H 1.08997 * 109.47299 * 60.00391 * 1 2 3 28 28 H 1.09007 * 109.46778 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46882 * 240.00304 * 2 1 3 30 30 H 1.09001 * 109.47404 * 168.15828 * 3 2 1 31 31 H 1.09004 * 109.47079 * 288.15766 * 3 2 1 32 32 H 1.09002 * 109.47004 * 48.15285 * 3 2 1 33 33 H 1.08997 * 109.32712 * 311.56192 * 6 4 2 34 34 H 1.08999 * 109.33482 * 71.21692 * 6 4 2 35 35 H 1.09001 * 108.51411 * 58.44899 * 7 6 4 36 36 H 1.09001 * 108.51421 * 175.94410 * 7 6 4 37 37 H 1.08991 * 109.49559 * 204.97912 * 8 7 6 38 38 H 1.09001 * 109.48727 * 325.02172 * 8 7 6 39 39 H 1.09002 * 109.36652 * 28.31095 * 9 8 7 40 40 H 1.09003 * 109.36677 * 147.92545 * 9 8 7 41 41 H 1.08990 * 108.93711 * 280.02808 * 10 9 8 42 42 H 1.09002 * 108.75221 * 161.50993 * 10 9 8 43 43 H 1.09003 * 109.47206 * 307.69135 * 15 12 11 44 44 H 1.08997 * 109.47622 * 67.69591 * 15 12 11 45 45 H 1.09003 * 109.46757 * 299.99768 * 16 15 12 46 46 H 1.08996 * 109.47536 * 60.00118 * 16 15 12 47 47 H 1.09000 * 109.47326 * 300.00117 * 17 16 15 48 48 H 1.09005 * 109.46659 * 59.99628 * 17 16 15 49 49 H 0.96988 * 120.00285 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 1.2492 5 1 1.7981 -0.1307 2.1330 6 6 1.3629 -2.1098 1.3555 7 6 1.6259 -2.7068 2.6739 8 6 3.0996 -2.9828 2.9563 9 6 3.7479 -1.7323 3.4971 10 6 4.3503 -0.9138 2.3453 11 7 3.4735 -0.8863 1.1583 12 16 4.1593 -1.0584 -0.3393 13 8 5.5543 -1.1335 -0.0793 14 8 3.6123 0.0099 -1.1001 15 6 3.5373 -2.6524 -0.9414 16 6 4.2517 -3.0196 -2.2436 17 6 3.7275 -4.3644 -2.7513 18 6 4.4307 -4.7258 -4.0343 19 1 5.1771 -4.0628 -4.4462 20 6 4.1219 -5.9033 -4.6816 21 7 4.7351 -6.2184 -5.8015 22 14 2.8323 -7.0510 -3.9680 23 1 1.4968 -6.6928 -4.5096 24 1 3.1572 -8.4519 -4.3385 25 1 2.8178 -6.9208 -2.4889 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1093 1.4500 0.2109 31 1 1.8591 1.8919 -0.9765 32 1 1.5146 2.0136 0.7656 33 1 0.2874 -1.9982 1.2181 34 1 1.7596 -2.7650 0.5801 35 1 1.2470 -2.0318 3.4413 36 1 1.0783 -3.6467 2.7437 37 1 3.1856 -3.7837 3.6904 38 1 3.5971 -3.2806 2.0333 39 1 3.0002 -1.1334 4.0172 40 1 4.5376 -2.0079 4.1962 41 1 5.3100 -1.3487 2.0665 42 1 4.5129 0.1078 2.6889 43 1 3.7268 -3.4224 -0.1935 44 1 2.4652 -2.5788 -1.1235 45 1 4.0621 -2.2496 -2.9916 46 1 5.3238 -3.0933 -2.0617 47 1 3.9173 -5.1342 -2.0032 48 1 2.6552 -4.2911 -2.9332 49 1 4.5181 -7.0469 -6.2567 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001309351978.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:52 Heat of formation + Delta-G solvation = -77.055885 kcal Electronic energy + Delta-G solvation = -27343.797987 eV Core-core repulsion = 23818.980825 eV Total energy + Delta-G solvation = -3524.817163 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.79132 -37.47574 -35.91631 -35.16993 -34.88103 -33.68266 -32.22846 -31.50871 -28.41604 -27.43999 -25.94647 -25.56633 -23.72566 -21.46747 -21.00775 -20.58639 -20.09365 -18.75981 -17.24989 -16.81144 -16.62221 -16.13471 -15.44095 -15.39603 -14.91390 -14.42105 -14.35119 -14.19554 -14.03633 -14.00957 -13.12419 -12.91151 -12.85561 -12.55755 -12.45634 -12.35141 -12.22433 -12.03311 -11.88267 -11.76039 -11.61413 -11.51563 -11.35256 -11.16902 -10.95629 -10.91275 -10.74167 -10.68305 -10.58435 -10.43146 -10.11044 -9.95906 -9.87043 -9.64650 -9.27979 -8.92707 -8.59334 -6.08958 -4.08177 0.40417 2.68698 3.25702 3.33398 3.35365 3.90552 4.19120 4.29762 4.39665 4.51474 4.59638 4.74204 4.83677 4.86670 4.96378 4.99307 5.06871 5.11626 5.24780 5.27575 5.34706 5.44028 5.50447 5.54287 5.57034 5.68400 5.73062 5.79096 5.85765 5.87983 5.92619 5.96400 5.98184 6.04208 6.12532 6.13276 6.15076 6.20960 6.26789 6.39778 6.55468 6.66535 6.70500 7.12165 7.26128 7.70604 8.47231 8.95546 9.52245 11.04423 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014793 B = 0.004312 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.295931 B = 6491.911942 C = 6699.154529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C -0.116 4.116 4 C 0.158 3.842 5 H 0.087 0.913 6 C -0.158 4.158 7 C -0.114 4.114 8 C -0.119 4.119 9 C -0.128 4.128 10 C 0.117 3.883 11 N -0.987 5.987 12 S 2.588 3.412 13 O -0.963 6.963 14 O -0.946 6.946 15 C -0.621 4.621 16 C -0.095 4.095 17 C -0.003 4.003 18 C -0.527 4.527 19 H 0.074 0.926 20 C 0.068 3.932 21 N -0.900 5.900 22 Si 0.879 3.121 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.266 1.266 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.063 0.937 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.019 0.981 48 H 0.015 0.985 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.309 11.336 20.906 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.173 4.173 4 C 0.050 3.950 5 H 0.105 0.895 6 C -0.197 4.197 7 C -0.151 4.151 8 C -0.157 4.157 9 C -0.167 4.167 10 C -0.008 4.008 11 N -0.823 5.823 12 S 2.686 3.314 13 O -0.953 6.953 14 O -0.935 6.935 15 C -0.752 4.752 16 C -0.134 4.134 17 C -0.042 4.042 18 C -0.565 4.565 19 H 0.093 0.907 20 C -0.133 4.133 21 N -0.539 5.539 22 Si 0.706 3.294 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.191 1.191 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.082 0.918 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.038 0.962 48 H 0.033 0.967 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.698 11.865 20.416 24.837 hybrid contribution -1.136 -1.393 0.409 1.844 sum -8.834 10.471 20.825 24.928 Atomic orbital electron populations 1.21951 0.94689 1.01922 1.01952 1.22082 0.96324 0.98858 0.97657 1.21648 1.01075 0.93837 1.00787 1.21001 0.78683 0.95335 0.99935 0.89496 1.21746 1.02029 0.97037 0.98839 1.20393 0.96462 1.00755 0.97496 1.21096 0.95820 0.97354 1.01396 1.21695 1.00815 0.96830 0.97348 1.21636 0.93280 1.00604 0.85294 1.57203 1.14284 1.88035 1.22755 1.05713 0.74066 0.77844 0.73790 1.93529 1.30345 1.87866 1.83577 1.93697 1.78487 1.50103 1.71252 1.30835 1.12220 1.21849 1.10272 1.21296 0.99412 1.01821 0.90918 1.19521 0.96308 0.91399 0.96974 1.21135 1.23117 1.06233 1.05973 0.90748 1.25015 0.96046 0.97654 0.94616 1.69904 1.42429 1.24546 1.17015 0.86794 0.82216 0.80289 0.80089 1.20202 1.21257 1.19054 0.92818 0.92164 0.92111 0.88650 0.91972 0.92468 0.94728 0.89749 0.90973 0.92338 0.92388 0.91824 0.91755 0.91566 0.90805 0.88551 0.91848 0.85456 0.85264 0.91266 0.90940 0.96231 0.96654 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.62 37.16 0.32 -1.00 16 2 C -0.13 -1.43 1.99 -90.62 -0.18 -1.61 16 3 C -0.12 -1.37 7.71 37.16 0.29 -1.09 16 4 C 0.16 1.51 1.59 -67.97 -0.11 1.40 16 5 H 0.09 0.74 8.06 -51.93 -0.42 0.32 16 6 C -0.16 -1.38 4.76 -28.58 -0.14 -1.52 16 7 C -0.11 -0.90 5.15 -29.79 -0.15 -1.06 16 8 C -0.12 -1.00 5.50 -28.01 -0.15 -1.15 16 9 C -0.13 -0.97 5.71 -27.48 -0.16 -1.13 16 10 C 0.12 1.12 6.06 -3.13 -0.02 1.11 16 11 N -0.99 -10.87 1.96 -106.39 -0.21 -11.08 16 12 S 2.59 37.53 4.75 -107.50 -0.51 37.02 16 13 O -0.96 -16.73 16.09 -57.54 -0.93 -17.66 16 14 O -0.95 -15.10 11.27 -57.54 -0.65 -15.75 16 15 C -0.62 -9.17 4.40 37.16 0.16 -9.00 16 16 C -0.10 -1.86 5.16 -26.73 -0.14 -2.00 16 17 C 0.00 -0.08 4.04 -27.88 -0.11 -0.19 16 18 C -0.53 -14.99 9.66 -34.44 -0.33 -15.32 16 19 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 21 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 22 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.49 6.06 -51.92 -0.31 0.18 16 29 H 0.10 1.21 4.43 -51.87 -0.23 0.98 16 30 H 0.06 0.81 6.08 -51.93 -0.32 0.50 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.03 0.34 8.09 -51.93 -0.42 -0.08 16 33 H 0.08 0.64 5.68 -51.93 -0.30 0.35 16 34 H 0.07 0.70 4.92 -51.93 -0.26 0.45 16 35 H 0.06 0.41 7.36 -51.93 -0.38 0.03 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.62 6.86 -51.93 -0.36 0.27 16 39 H 0.07 0.45 7.32 -51.93 -0.38 0.07 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 1.04 6.55 -51.93 -0.34 0.70 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.13 1.67 7.41 -51.92 -0.38 1.28 16 44 H 0.13 1.67 6.20 -51.93 -0.32 1.35 16 45 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 47 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 48 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 361.44 15.07 5.45 5.45 Total: -1.00 -33.14 361.44 -10.13 -43.27 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -8.57 Total: -0.36 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: -0.82 Total: -30.67 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.57 Total: -38.02 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -1.57 Total: -33.41 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: 37.53 SS G_CDS: -0.51 Total: 37.02 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.14 -10.13 -43.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309351978.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.784 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds